Similarity Percentage Analysis Research Articles

Fish diversity, assemblage pattern along with the environmental variables in tidal fresh water stretch in the Hooghly estuary of Gangetic delta, West Bengal, India

The greatest estuary created by the Gangetic delta in India is the Hooghly estuary. Despite their importance to the estuarine biodiversity, the tidal freshwater areas of this estuary have gained little interest from ecologists. Present study aims to explore the fish diversity with its assemblage pattern and their relationship with physico-chemical parameters from June 2020 to May 2021. There have been identified 118 fish species in total, from 14 orders and 47 families, with seven (7) being near threatened, fifteen (15) vulnerable, four (4) endangered, and eight (8) not evaluated. Perciformes (29.66 %), Cypriniformes (22.88 %), and Siluriformes (21.18 %) accounted for 73.72 % of the overall species count. Station-1 has significantly higher species richness, rarefied richness, and abundance. Station-3 and station-2 followed station-1 respectively. The composition of fish species changed significantly among the stations, as shown by cluster analysis, nMDS (nonmetric multidimensional scaling), ANOSIM (analysis of similarities), and SIMPER (similarity percentage analysis) (p <0.05). The canonical correspondence analysis revealed that alkalinity, conductivity, phosphate, and total carbon dioxide of the water were the key environmental parameters. In addition to defining a sustainable management method for the fish resources in the Hooghly estuary, this effort will act as a baseline study for further investigation.

Metagenomic insights into bacterial dynamics and niche partitioning in response to varying oxygen gradients in the Arabian Sea oxygen minimum zone (OMZ)

This study investigates the impact of oxygen gradients on bacterial diversity and community composition within the Arabian Sea oxygen minimum zone (OMZ), providing insight into their ecology in this unique environment. Vertical profiling of physicochemical parameters and bacterial community composition was conducted at two stations within the OMZ using Illumina sequencing of the V3-V4 regions of the 16S rRNA gene. The oxygen levels in the water column of the study locations varied from oxic to hypoxic and Station-I exhibited intense anoxic conditions. Bacterial diversity analyses revealed a rich assemblage of 24 bacterial phyla dominated by Proteobacteria, with significant presence of Actinobacteria and Planctomycetes. SIMPER (Similarity percentage) analysis highlights taxa such as Synechococcophycideae, Flavobacteriia in oxic water and Phycisphaerae as significant contributors to community dissimilarity in oxygen-deficient water, emphasizing their ecological roles in nutrient cycling and the impact of oxygen availability on marine biodiversity. Canonical Correspondence Analysis (CCA) further elucidates the relationships between bacterial communities and environmental variables, with oxygen, temperature, and nutrient concentrations playing crucial roles in shaping bacterial community distributions. This research enhances our understanding of microbial ecology in the Arabian Sea OMZ by revealing how microbial communities respond to changing oxygen conditions, providing insights into the ecological dynamics of the region. Furthermore, these findings underscore the need for continued research to predict and mitigate the effects of environmental changes on marine ecosystems, particularly in the context of expanding OMZs and global biogeochemical cycles.

Seasonal patterns of juvenile fish assemblages in the surf zones of tropical sandy beaches along Gaolong Bay, Hainan Island, China

AbstractAimSurf zones are crucial nursery habitats for the early life stages of fish species associated with typical coastal ecosystems. However, little is known about the temporal patterns and drivers of fish assemblages in tropical surf zones. This study aimed to assess the (1) main changes in fish community structure throughout 1 year, (2) seasonal dynamic patterns in fish assemblages, and (3) key factors influencing fish assemblages in the tropical surf zones.LocationGaolong Bay, Wenchang City, Hainan Island, China.MethodsFish sampling was conducted monthly from June 2021 to May 2022 using a beach seine net. Fish species were identified using both morphological and molecular analyses. Kruskal–Wallis test, analysis of similarity, non‐metric multidimensional scaling analysis, and similarity percentage analysis were used to investigate the temporal fish assemblage patterns. Generalised additive models and canonical correspondence analysis were used to assess how environmental variables influence fish assemblages.ResultsWe identified 83 fish species, which were grouped into three ecotypes based on their primary habitat: coral reef‐seagrass‐associated species (CS) (35), mangrove‐estuarine‐associated species (ME) (30), and common coastal‐estuarine‐associated species (CE) (18). Most captured individuals were juveniles, and fish abundance and diversity were highest in May. Most CS species were abundant between March and May. ME and most CE species were dominant from June to August, and Mugilidae (CE) was abundant between October and February. Furthermore, surf fish assemblages were substantially influenced by tidal level, water temperature, conductivity, pH, turbidity, and dissolved oxygen.ConclusionsJuvenile fish were abundant in May and fish species with three ecotypes alternate in the surf zones throughout the year. Counter to much current thinking, March maybe the spawn peak of most fish species in the studied area, and we suggest that the fishing ban period could start from March instead of May in the inshore areas of Hainan Island.

Whole genome sequence analysis of shallot virus X from India reveals it to be a natural recombinant with positive selection pressure

BackgroundShallots are infected by various viruses like Onion yellow dwarf virus (OYDV), Leek yellow stripe virus (LYSV), Shallot latent virus (SLV) and Shallot virus X (ShVX). In India, they have been found to be persistently infected by ShVX. ShVX also infects onion and garlic in combination with other carlaviruses and potyviruses. ShVX is a member of genus Allexivirus of family Alphaflexiviridae. ShVX has a monopartite genome, which is represented by positive sense single-stranded RNA. Globally, only six complete and 3 nearly complete genome sequences of ShV X are reported to date. This number is insufficient to measure a taxon’s true molecular diversity. Moreover, the complete genome sequence of ShVX from Asia has not been reported as yet. Therefore, this study was undertaken to generate a complete genome sequence of ShVX from India.ResultsShallot virus X (ShVX) is one of the significant threats to Allium crop production. In this study, we report the first complete genome sequence of the ShVX from India through Next-generation sequencing (NGS). The complete genome of the ShVX (Accession No. OK104171), from this study comprised 8911 nucleotides. In-silico analysis of the sequence revealed variability between this isolate and isolates from other countries. The dissimilarities are spread all over the genome specifically some non-coding intergenic regions. Statistical analysis of individual genes for site-specific selection indicates a positive selection in NABP region. The presence of a recombination event was detected in coat protein region. The sequence similarity percentage and phylogenetic analysis indicate ShVX Indian isolate is a distinctly different isolate. Recombination and site-specific selection may have a function in the evolution of this isolate. This is the first detailed study of the ShVX complete genome sequence from Southeast Asia.ConclusionThis study presents the first report of the entire genome sequence of an Indian isolate of ShVX along with an in-depth exploration of its evolutionary traits. The findings highlight the Indian variant as a naturally occurring recombinant, emphasizing the substantial role of recombination in the evolution of this viral species. This insight into the molecular diversity of strains within a specific geographical region holds immense significance for comprehending and forecasting potential epidemics. Consequently, the insights garnered from this research hold practical value for shaping ShVX management strategies and providing a foundation for forthcoming studies delving into its evolutionary trajectory.

Associations between wastewater gut microbiome and community obesity rates: Potential microbial biomarkers for surveillance

Gut microbes are crucial for human health, which are usually accumulated in urban wastewater systems. Seven wastewater treatment plants in Australia with distinct population obesity rates between 18% and 33% were selected for wastewater sampling and analysis. Human gut microbiome were detected using metagenomic sequencing to investigate their associations with the community obesity rate. To unravel this complex relationship, a range of algorithm models, including linear discriminant analysis effect size (LEfSe), similarity percentage analysis (SIMPER), statistical analysis of metagenomic profiles (STAMP), linear models for microarray and RNA-Seq data analysis (LIMMA), Relief, ratio approach for identifying differential abundance (RAIDA), least absolute shrinkage and selection operator (LASSO), support vector machine (SVM), Boruta, DESeq2 and analysis of compositions of microbiomes with bias correction (ANCOM-BC), were used to identify potential bacterial biomarkers for obesity in the wastewater microbiome. Among these algorithm models, LEfSe, LIMMA, SIMPER and SVM are effective in identifying multiple microbial biomarkers. Specific human gut microbes, including Ruminococcus_E, Agathobacter, Fusicatenibacter, Anaerobutyricum, Blautia_A and Neisseria, were identified as potential consensus microbial biomarkers for obesity in the population. A high obesity rate is mainly characterized by a high abundance of pathogenic bacteria and microorganisms associated with xenobiotic biodegradation and metabolism, endocrine and metabolic diseases, and transcription pathways. This study underscores the innovative potential of leveraging human gut microbes in wastewater as biomarkers for monitoring obesity levels across communities, offering a novel, cost-effective, and indirect approach to public health surveillance.

Authenticating genuine Kakadu plum (Terminalia ferdinandiana) powders from fakes using stable isotope analysis and elemental profiling

Kakadu plum (Terminalia ferdinandiana) is a plant species endemic to northern Australia, attracting increasing consumer interest due to its multiple nutritional qualities. As a consumer product at a premium price point, the Kakadu plum may be susceptible to food fraud. This paper determines the prevalence of food fraud in the e-commerce Kakadu plum market. We applied stable isotope analysis (SIA) and elemental profiling using X-ray fluorescence (XRF) through Itrax to evaluate the authenticity of 13 commercially available Kakadu plum powdered samples purchased from Australian and overseas suppliers against four powdered samples directly provided by First Nations harvesters. Overseas and Australian-sourced powders were found to have distinct isotopic and elemental profiles. All overseas powders showed highly enriched δ13C values indicating they are fakes, not derived from Kakadu plum. Non-metric multi-dimensional scaling (nMDS) of elements also displayed distinct groupings between Australian-sourced and overseas powders, whilst analysis of similarity percentages (SIMPER) differentiated the elemental composition between groups. It was also observed that 89% of overseas products sold as Kakadu plum were deceptively labelled as other products. These results showed food fraud occurred along the supply chain of overseas-sourced product. Given the complexities of multi-national food systems, utilising a combination of stable isotopes and elemental profiling are straightforward applications for detecting fraudulent products.

Preliminary Study on Yeasts Associated with the Production of "Tostado"-a Traditional Sweet Wine from Galicia (NW Spain).

Tostado is a traditional sweet wine from the Designations of Origins (DOs) of Ribeiro and Valdeorras in Galicia (NW Spain). The harvested grapes are air-dried and pressed to increase the concentrations of sugars, acids, and flavour compounds. Therefore, knowledge of the yeasts involved in fermentation under these conditions is essential to guarantee the quality and uniqueness of the valuable, distinctive, and expensive Tostado wines. Saccharomyces and non-Saccharomyces yeasts were identified using Wallerstein Laboratory (WL) Nutrient Agar and lysine plating, followed by polymerase chain reaction (PCR) amplification, enzymatic digestion, and sequencing. Saccharomyces cerevisiae isolates were further characterised at the strain level using mitochondrial DNA (mtDNA) restriction fragment length polymorphism (RFLP). Statistical analyses were also performed, including different diversity indices, Similarity Percentage (SIMPER) analysis, principal component analysis (PCA), neighbor-joining clustering, parsimony-phylogram, and network plot. In addition, the total acidity, volatile acidity, reducing sugars, and alcoholic strength by volume of the Tostado wines were analysed. A wide diversity of autochthonous yeasts was found, which were predominantly species of oenological relevance, such as Lachancea thermotolerans, Starmerella bacillaris, Hanseniaspora uvarum, Debaryomyces hansenii, Torulaspora delbrueckii, Pichia spp., and Saccharomyces cerevisiae from the must and paste stages of Tostado wine. In addition, 19 different S. cerevisiae strains were identified. This high yeast diversity, which changed from the early stages of fermentation, could contribute to the distinctive characteristics observed in Tostado wine. Characteristic and differentiating chemical and microbiological profiles were found as early as the pre-fermentation stages, which adds value to these special wines that have rarely been studied.

Effect of land use type on macrobenthos assemblages, distribution, and functional guild in Upstream Citarum River

Aquatic community biodiversity is gradually impacted by the expansion and intensification of agricultural and urbanization land use. However, data on macrobenthos responses to land use in tropical streams are relatively limited. This study aims to investigate the responses of macrobenthos diversity, functional guild, and physicochemical parameters in Upstream Citarum River land use type, agricultural and urbanization area. A total of 317 species from 21 families, 11 orders and three phyla were identified, with agricultural land use having the highest abundance of macroinvertebrates (222 individuals), followed by urbanization land use (95 individuals). Ecological indices, including diversity, evenness, dominance, and margalef displayed similar patterns across different land use types. Contribution of macrobenthos species in the upstream Citarum River based on Similarity Percentage (SIMPER) analysis are Hydropychidae and Palaemonidae. Filter collectors (FC) had the highest density (78.829%) in agricultural land use, while scrapers (SC) had the highest density (87.37%) in urbanization land use. Nepidae and Palaemonidae showed positive correlations with temperature, total organic carbon (TOC) and total organic matter (TOM). The study concludes that the river of macrobenthos communities and functional guilds were influenced by the land use type and water quality. This study of the effect of land use type on macrobenthos will provide river management for further help the sustainability of tropical stream and implication of land use policy for future studies.

Feeding habits of Pacific anchovy, Engraulis japonicus (Actinopterygii: Clupeiformes: Engraulidae), captured off the southern coasts of Korea

Understanding the feeding ecology of anchovies in the southern waters of Korea is crucial for improving ecosystem management. However, to date, few studies have examined seasonal changes in the diet of Pacific anchovy, Engraulis japonicus Temminck et Schlegel, 1846, in Korean waters, with the majority of these focusing on the larval and adult stages. The presently reported study provides updates on the feeding habits of E. japonicus off the southern coast of Korea. We analyzed 347 individuals. One-way analysis of similarity was performed to evaluate the differences in diet composition among size classes and seasons of E. japonicus, and correspondence analysis was conducted using the matrix of the percentage by number (%N) data for prey with occurrence of less than 10% to determine the distribution of prey across all size classes and each season. The diet of E. japonicus was investigated according to season and four size classes. The fork length of these specimens ranged from 5.4 to 14.1 cm. A total of 55 prey taxa of varying sizes between 0.33 mm (diatom Coscinodiscus spp.) and 5.8 mm (fish larvae) were recorded. Anchovies were exclusively planktivorous, and copepods were the most common prey, comprising 82.1% of the identified food items and 84.3% of anchovy stomach contents analyzed. However, their occurrence and abundance varied according to season and Pacific anchovy size class. According to the percentage of the index of relative importance (%IRI), the most important prey items were the copepods Calanus sinicus (48.0%), Paracalanus orientalis (31.7%), bivalve larvae (5.8%), Ditrichocorycaeus affinis (4.2%), and calanoid copepods (2.4%). Analysis of similarities and similarity percentage analysis indicated that a distinct diet of Pacific anchovy in the southern waters of Korea is potentially driven by differences in hydrological conditions. Correspondence analysis revealed that anchovies had the most significant impact on the differences between size classes. The results deepen our understanding of prey species diversity and intraspecific food competition off the southern coast of Korea.

Low salinity shock as a tool to reduce the likelihood of ship-mediated invasions

Most common practices to manage ships’ biofouling consist of using Anti-Fouling Systems, which comprises Anti-Fouling Coatings, devices such as Marine Growth Prevention System, and proactive and reactive cleaning. Many of the substances and techniques utilized have the potential to pollute the surrounding environment. The present study tested the use of low salinity water as a simple, low cost and non-polluting biosecurity tool to reduce the likelihood of ship-mediated invasions in Guanabara Bay, Rio de Janeiro, Brazil. Twenty biofouled panels (3.5 months of immersion) were submitted to 4 salinity treatments – 00, 07, 15 and 35 PSU (control) (n = 5 per treatment) for 2-h, and species abundance monitored 1, 7 and 30 days after treatment. One month after treatment, two distinct groups were identified: panels treated with salinities (1) 00 and 07 PSU; and (2) 15 and 35 PSU. Similarity percentage analysis indicated low salinities (00 and 07 PSU) presented more dead organisms, bare spaces, biofilm and recruits when compared to higher salinities (15 and 35 PSU). Biofouling thickness was also significantly lower on the first group. Since treatments with 00 and 07 PSU presented similar and effective results at killing macrofouling and reducing their thickness, we recommend the use of salinities ≤ 7 PSU for controlling vessel and recreational crafts’ biofouling. This treatment proved to be promising as a biosecurity tool and for hull drag management, which can decrease fuel consumption and Greenhouse Gas emissions. Low salinity exposure facilities could enable an environmentally and logistically interesting solution for biofouling management.

Food Selectivity in Juvenile Three-Spined Stickleback Gasterosteus aculeatus L. (Gasterosteidae) at Nursery Grounds in the White Sea

The spatial and temporal variability in the dietary preferences of juvenile three-spined stickleback Gasterosteus aculeatus were studied across the typical coastal habitats of Keret Archipelago, Kandalaksha Bay(the White Sea). The sampling of fish using a beach seine was conducted in the late July–early August period and in late August. Additionally, zooplankton samples were collected to conduct a quantitative assessment of the abundance of potential prey items. The similarity percentage (SIMPER) analysis was applied to the data obtained from the stomach content and revealed the five planktonic taxa most prominently contributing to the diet of juvenile sticklebacks. Among these, the copepod Temora longicornis was the most important prey item at marine sites, while Acartia longiremis dominated the diet of fish in the marine lagoon. The calculation of the selectivity index revealed that some taxa (such as A. longiremis) were always avoided by juvenile fish, whereas the selectivity of some taxa increased in late August. In general, juvenile sticklebacks demonstrated a pronounced individual variation in their selectivity, even when a particular prey item was selected positively during the whole period of study. Our data highlight that despite the predominant consumption of easily available prey by juvenile sticklebacks, they demonstrate taxonomic- and size-specific prey selectivity.

300. Disturbance of Gut Microbial Diversity in ICU Patients from Colombia is Driven by Multi-Drug Resistant Organisms (MDRO) Colonization

Abstract Background Gut microbiota plays a critical role in health, with essential functions in physiology, metabolism, immunity, regulation, and protection against pathogens. Critically-ill patients admitted on the ICU experience perturbation in the microbiota, with reduction in the phylogenetic diversity and composition. Here, we aimed to investigate the rectal microbiota in patients admitted on the ICU from Colombia, focused on MDRO colonization. Methods Microbiome analysis and microbiological screening for MDRO and WGS were performed in rectal swabs taken on admission day from 180 patients from 5 ICUs. Microbiome analysis was determined by 16S rRNA sequencing using Illumina Miseq platform. alpha-diversity metrics were calculated by Richness, Simpson, and Shannon indexes, and beta-diversity was determined using Similarity Percentages (SIMPER) analysis. Patients were grouped into 2 cohorts: MDRO-colonized and non-colonized. Clinical data was collected using REDCap. Results MDRO colonization was detected in 13 patients (7%), and Enterobacter cloacae complex was the most prevalent microorganism (38%), followed by K. pneumoniae (23%), and P. aeruginosa (15%). Of these MDRO, 23% and 15% harbored KPC-2 and KPC-3/OXA-9 combination, respectively. Prevotella and Bacteroides were the most abundant genus in the microbiota of all patients. Interestingly, microbiota of MDRO-colonized patients showed lower diversity (Shannon p:0.0025, Simpson p: 0.0031 and richness 0.012) and had less bacterial taxa than the observed in the non-colonized group (n=167), in which Bacteroides, Porphyromonas, Campylobacter, and Oscillospiraceae genus were exclusively detected. Moreover, Parabacteroides was a genus exclusively identified in the MDRO colonized group. Further, 14 genus including Oscillospiraceae, Lactobacillus, and Faecalibacterium related to beneficial functions were lower in abundance from MDRO-colonized patients, whereas some pathobionts were present in high abundance in this group. Most of patients were men (58%); median age was 59 y/o. Charlson comorbidity index 4 (IQR=1-6). Conclusion Loss in microbial diversity, with low abundance of beneficial microorganisms were associated with MDRO gut colonization in ICU patients from Colombia. Disclosures Karen Melissa Ordoñez, n/a, Pfizer: Advisor/Consultant|Pfizer: Honoraria

Comparative seasonality of phytoplankton community in two contrasting temperate estuaries on the western coast of Korea

In estuaries, freshwater discharge functions as a regulator of physicochemical and biological properties. We assessed the seasonal variability of the phytoplankton community in response to hydrological features and nutrient dynamics in two contrasting estuaries in the presence and absence of a dam on the western coast of Korea. Diversity and evenness were also evaluated through chemotaxonomic analysis. Seasonal and inter-estuarine comparisons revealed the overall predominance of diatoms in all seasons and the differentiated composition of small phytoplankton populations in each estuary, which was mainly characterized by significant contribution of cryptophytes in the continuously flushed estuary in contrast to the seasonal occurrence of pelagophytes and cyanobacteria in the intermittently perturbed estuary. Our one-way analysis of similarity and similarity percentage analysis showed obvious inter-estuarine discrepancy of the phytoplankton community in winter in relation to the high dissolved inorganic nitrogen concentration in the natural estuary, implying that the impact of freshwater inflow on the phenological response of phytoplankton can be maximized during active seawater intrusion in dry seasons in the prevalence of freshwater and seawater in the estuary. The contribution swing of diatoms and cryptophytes during the study period reflects the seasonal variability in nutrient dynamics, including absolute concentrations and stoichiometric ratios, which is especially associated with P-limitation on the western coast of Korea. The occurrence of cyanobacteria with a summer peak of phytoplankton biomass in the dammed estuary during the study period indicates the role of an estuarine dam as a conduit transporting phytoplankton and dissolved inorganic nutrients. These findings further suggest that the phytoplankton community structure, differentiated by the presence and absence of dams, influences bottom-up regulation and thus the food web structure in estuaries.

Dominant role of rare bacterial taxa rather than abundant taxa in driving the tailing primary succession

Primary ecological succession is imperative for tailing vegetation, driven notably by microbes that enhance tailing nutrient status. Yet, the roles of abundant and rare taxa in tailing primary succession remain underexplored. This study investigates these subcommunities across three succession stages (i.e., original tailing, biological crusts, grasslands). Throughout primary succession, alpha diversity and functional gene abundances of the rare taxa (RT) group consistently rise from bare tailings to grasslands. Conversely, the abundant taxa (AT) group displays an opposing trend. Intriguingly, employing co-occurrence networks, keystone taxa, mantel tests, similarity percentage analysis, and structural equation model, the study uncovers that RT wields a more pivotal role than AT in driving tailing primary succession. Community assembly analysis reveals stochastic control of AT and deterministic control of RT. Additionally, primary succession reinforces stochastic processes in AT, while RT's deterministic process remains unaffected. By unveiling these dynamics, the research enriches our understanding of primary ecological succession in tailings. Recognition of unique diversity patterns and community assembly mechanisms for rare and abundant subcommunities advances tailing ecosystem comprehension and informs ecological restoration strategies. This study thus contributes valuable insights to the complex interplay of microbial taxa during tailing primary succession.

MACROFAUNAL DIVERSITY ON THE SURFACE SEDIMENT OF MANGROVE HABITAT ADJACENT TO THE SEAGRASS BEDS AT PUNANG- SARI RIVER ESTUARY (MALAYSIAN BORNEO), SOUTH CHINA SEA

Macrofaunal diversity and composition are essential to understanding the ecosystem structures and functions of mangroves in any dynamic estuarine coast. To understand the temporal distribution of macrofaunal community structures and diversity on the surface sediment in the intertidal mangrove forest next to the seagrass beds, this study was conducted at Punang-Sari-River estuary, Lawas, Sarawak (Malaysian Borneo), South China Sea. Sampling was done during post-monsoon, intermediate-September, pre-monsoon, and monsoon from July 2019 to February 2020. The mean macrofauna abundance was higher pre-monsoon, while Gastropoda Optediceros breviculum (L. Pfeiffer, 1855) was the most abundant (RA = 0.704). Important Species Index (ISI = 70.36) and percentage of contribution (64.97%) were also higher for this species than any other records from the site. The ANOSIM (Analysis of Similarity), Jaccard index and SIMPER (Similarity Percentage Analysis) analysis suggested that the highest species abundance similarity was observed between pre-monsoon and monsoon, while the highest dissimilarity was observed between intermediate-September and pre-monsoon (74.67%). Seasonal PCA, nMDS, and cluster analysis revealed that pre-monsoon and monsoon were comparable in species and individual abundance. The dominance (0.85) was found significantly higher (P &lt; 0.0001) in intermediate-September, while Simpson (0.734), Shannon (1.56) and Evenness indices (0.528) were found higher in monsoon, followed by the higher Margalef richness indices (3.21) in post-monsoon. It was observed that the seasonal ecological parameters were found to be significantly (P &lt; 0.05) different, including the temperature, salinity, rainfall, pore water nitrogenous compounds (NO2, NO3 and NH3-N), phosphorus compound (PO4) and micro minerals. The Canonical Correspondence Analysis (CCA) results suggested that ecological factors influenced several species. Considering the few studies on mangrove macrofauna in Malaysian Borneo, further research on their trophic structures and food web interactions is very important to disclose their overall characteristics and ecosystem functions.

Fish biodiversity and abundance of Thomas Dam, Danbatta Local Government Area of Kano State, Nigeria

Thomas Dam is one of the largest reservoirs in Kano, Nigeria and supports diverse fish species. Present study was carried out to assess the fish diversity status of the reservoir. Fish sampling was done monthly for a period of twelve months (January-December, 2022) using gill nets, cast nets, long lines, and different traps. A total of 1,318 fishes belonging to 6 families and 10 species were recorded during the study period. The results indicated Cichlidae as the dominant family represented by 4 species while Clariidae had representation with 2 species. Alestiidae, Mormyridae, Latidae, and Protopteridae were represented by 1 species each. Monthly fish diversity analyzed using nMDS (stress=0.06031) indicated influence of seasonality on the biodiversity of the Dam. The analysis of similarity (ANOSIM, P &lt; 0.008, R = 0.47) show significant difference in fish assemblage structure between rainy season (June-September) and dry season (October-May). Also, Similarity percentage (SHRIMPER) analysis indicated 74.40% cumulative dissimilarity among the two Seasons contributed by five species; Protopterus annectens (29.85%), Brycinus nurse (15.47%), Oreochromis aureus (12.56%), Late niloticus (8.44%) and Sarotheroden galilaeus (8.08%). The fish diversity indices were calculated using PAST (version 3.22) software. Result of the diversity indices indicated Simpson’s diversity Index (1-D) and Shannon-Wiener index (H) values were highest during the months of rainy season of (1-D=0.85-0.89, H=2.06-2.24) indicating influence of the season on the fish diversity. The study concluded on the fact that changes of seasons have impact on the fish abundance and distribution of the Dam.

Shifts in species dominance related to spatial assemblages and variation in environmental parameters in a tropical mangrove estuary

A shift in species dominance in the mangrove microalgae community in Cross River Estuary System (CRES), Nigeria, was carried out during the wet season to highlight the microalgae structure, identify potential indicators, and evaluate the water quality variation. Plankton samples were collected at sixteen selected sampling sites along the river. Diatoms showed the highest number of species (240 species), contributing more than 70% of the total microalgae abundance. Cluster analysis of the microalgae community delimits the CRES into three sections; upper (UCRS), middle (MCRS), and lower (LCRS) communities. The spatial shift in the microalgae community showed that the green algae (Eudorina elegans and Hylotheca dissiliens) dominated the UCRS communities, while diatoms dominated the MCRS (Polymyxus coronalis and Actinocyclus normanii) and LCRS (A. normanii and A. octonarius). The principal component analysis showed that the UCRS was influenced by turbidity and nitrate, while the MCRS and LCRS were characterized by phosphate, electrical conductivity, and salinity/total dissolved solids. The similarity percentage (SIMPER) analysis showed that Surirella tenera and Hylotheca dissiliens contributed >3.5% inter site dissimilarity between the UCRS and LCRS microalgae community. The redundancy analysis revealed that some microalgae species such as Odontella mobiliensis, Coscinodiscopsis jonesiana, A. normanii, and A. octonarius responded positively to salinity change and ammonia concentration in the estuary, while S. tenera, P. coronalis, Bacillaria paxilifer, Navicula transitans, Cyclotella meneghiniana, Humidophila contenta, Melosira granulata, Aulacoseira herzogii, Eudorina elegans, H. dissiliens, Mougeotia sp., and Dinobryon sertularia responded positively to turbidity, nitrate, and phosphate concentration. This study illustrates that CRES inhabit rich biodiversity of microalgae which some taxa could be used as indicators of the environmental changes in marine waters.

Ontogenetic Shifts in Body Morphology of Demersal Sharks' Species (Order: Squaliformes) Inhabiting the Western-Central Mediterranean Sea, with Implications for Their Bio-Ecological Role.

Several elasmobranch species undergo shifts in body proportions during their ontogenetic growth. Such morphological changes could reflect variation in diet, locomotion, or, more broadly, in the species' interactions with their environment. However, to date, only a few studies have been conducted on this topic, and most of them focused on particular body regions. In the present study, the ontogenetic growth of five different demersal shark species was investigated by using both traditional linear morphometry of the entire body and shape analysis of the caudal fin. A total of 449 sharks were analysed: 95 little gulper sharks, 80 longnose spurdogs, 103 kitefin sharks, 124 velvet belly lanternsharks, and 47 angular roughsharks. From each specimen, 36 linear morphometric measurements were taken. While a first canonical analysis of principal coordinates ruled out the possibility of different growth patterns between males and females, the same analysis statistically discriminated between small and large individuals in every species based on their morphology. A Similarity Percentage analysis revealed that the most important measurements in distinguishing these two groups were those related to body lengths, indicating that large individuals are more elongated than small individuals. The shape analysis of caudal fins revealed allometric growth during ontogenetic development, with adult individuals having a wider fin (discriminant analysis, p < 0.05). These findings could be related to changes in predatory skills, supporting the hypothesis of a shift in the ecological role that these sharks play in their environment, thus providing new essential information for their conservation.

Integrated Biogeography and Assembly Mechanisms of Microeukaryotic Communities in Coastal Waters Near Shellfish Cultivation.

The Lianjiang coast in the East China Sea is a typical subtropical marine ecosystem, and shellfish cultivation occupies almost all of the available tidal flats. Many studies have investigated the effects of shellfish cultivation on benthic organisms and sediments, while the impact of shellfish cultivation on plankton ecosystems is still poorly understood. This study investigated the biogeographical patterns of microeukaryotic communities from Lianjiang coastal waters in four seasons using 18S ribosomal RNA gene amplicon sequencing. Microeukaryotes were mainly comprised of Dinoflagellata, Diatomea, Arthropoda, Ciliophora, Chlorophyta, Protalveolata, Cryptophyceae, and Ochrophyta, and presented significant differences in three habitats (the aquaculture area, confluent area, and offshore area) and four seasons. Similarity percentage analysis revealed that Paracalanus parvus, Heterocapsa rotundata, Bestiolina similis, and five additional key taxa contributed to spatio-temporal differences. Seasonal environmental and spatial factors explained 27.47% of microeukaryotic community variation on average, with 11.11% of the variation shared. Environmental variables, particularly depth, pH, and nitrite concentration, were strongly associated with the microeukaryotic community compositions. The neutral community model further demonstrated that stochastic processes were sufficient in shaping substantial variation in microeukaryotic communities across four seasons, which may reveal the remaining unexplained microeukaryotic community variation. We further divided four seasons into the aquaculture stages and non-aquaculture stages, and speculated that aquaculture activities may increase the dispersal limitation of microeukaryotes in coastal waters, especially for the big bodied-microbes like Arthropoda. The results provide a better understanding of the biogeographical patterns, processes, and mechanisms of microeukaryotic communities near shellfish cultivation.

Evaluating the influence of environmental variables on fish abundance and distribution in the Singhiya River of Morang District, eastern Nepal

Monitoring the impact of fishing pressure on the Singhiya River is critical for resource development and sustainability, and the present situation is alarming and causing critical concern among the public. This study aimed to identify fish community trends over time and space in the river, and to investigate the impact of environmental variables on fish abundance and dispersion. Monthly fish sampling was performed from October 2020 to September 2021 from the 5th to 10th of each month. We used three cast nets of various mesh sizes (0.5, 2, &amp; 4 cm) and monofilament gill nets with mesh sizes of 6, 8, &amp; 10 cm. A total of 7,593 fish were collected, representing 61 species from seven orders, 20 families, and 37 genera. Similarity percentage (SIMPER) analysis revealed 78.8% similarity among six stations, with the primary contributing species: Puntius chola (28.2%), Puntius sophore (13.5%), Pethia ticto (5.33%), Chagunius chagunio (3.76%), Barbonymus gonionotus (3.69%), Puntius terio (3.46%), Opsarius shacra (2.2%), and Opsarius bendelisis (2.1%). Analysis of variance (ANOVA) on canonical correspondence analysis revealed that four of the seven selected environmental variables had significant relationship with the fish assemblage such as water parameters velocity, temperature, pH, and hardness. Overfishing and direct discharge of industrial waste into water resources may be the primary causes for the decline in fish diversity in Singhiya River.