Significance Of Such Modifications Research Articles

Modified cosmology through Kaniadakis entropy

We explore a cosmological model inspired by the modified Kaniadakis entropy and disclose the influences of the modified Friedmann equations on the evolution of the Universe. We find that in modified Kaniadakis cosmology with only pressure-less matter, one can reproduce the accelerated Universe without invoking any kind of dark energy. We delve into the evolution of the Universe during the radiation-dominated era as well. We also investigate the behavior of the scale factor and the deceleration parameter for a multiple-component Universe consisting of pressure-less matter and a cosmological constant/dark energy. Interestingly enough, the predicted age of the Universe in the modified Kaniadakis cosmology becomes larger compared to the standard cosmology which may alleviate the age problem. Furthermore, the findings reveal that in the modified Kaniadakis cosmology, the transition from a decelerated phase to an accelerated Universe occurs at higher redshifts compared to the standard cosmology. These results shed light on the potential implications of incorporating Kaniadakis entropy into cosmological models and provide valuable insights into the behavior of the Universe in different cosmological scenarios. Moreover, they emphasize the crucial role of modifications to the geometry component and the significance of such modifications in understanding the dynamics of the Universe.

Acetylated Signal Transducer and Activator of Transcription 3 Functions as Molecular Adaptor Independent of Transcriptional Activity During Human Cardiogenesis.

Activation of signal transducer and activator of transcription 3 (STAT3) is imperative for mammalian development, specifically cardiogenesis. STAT3 phosphorylation and acetylation are key post-translational modifications that regulate its transcriptional activity. Significance of such modifications during human cardiogenesis remains elusive. Using human pluripotent stem cells to recapitulate cardiogenesis, two independently modified STAT3α (92 kDa) isoforms (phosphorylated and acetylated), which perform divergent functions were identified during cardiomyocyte (CM) formation. Phosphorylated STAT3α functioned as the canonical transcriptional activator, while acetylated STAT3α underwent caspase-3-mediated cleavage to generate a novel STAT3ζ fragment (∼45 kDa), which acted as a molecular adaptor integral to the ErbB4-p38γ signaling cascade in driving CM formation. While STAT3α knockdown perturbed cardiogenesis by eliminating both post-translationally modified STAT3α isoforms, caspase-3 knockdown specifically abrogates the function of acetylated STAT3α, resulting in limited STAT3ζ formation thereby preventing nuclear translocation of key cardiac transcription factor Nkx2-5 that disrupted CM formation. Our findings show the coexistence of two post-translationally modified STAT3α isoforms with distinct functions and define a new role for STAT3 as a molecular adaptor that functions independently of its canonical transcriptional activity during human cardiogenesis. Stem Cells 2017;35:2129-2137.

Predator-induced shell plasticity in mussels hinders predation by drilling snails

Sessile invertebrate prey that detect waterborne predator cues often respond by strengthening their structural defenses. Experimental evidence of the functional significance of such modifications using field-raised organisms is lacking. This study addresses that gap using intertidal mussels and predatory dogwhelks from Atlantic Canada. During the spring and summer of 2016, we ran a field experiment that manipulated dogwhelk presence to test their nonconsumptive effects on mussel traits. Dogwhelk cues elicited thickening at the lip, centre, and base of mussel shells, although simultaneously limiting shell growth in length. As shell mass was unaffected by dogwhelk presence, a trade-off between shell thickening and elongation was revealed. Thickening was strongest at the thinnest parts of the shell. Using the field-raised organisms, a lab experiment found that dogwhelks took, on average, 55 % longer to drill and consume mussels previously exposed to dogwhelk cues than mussels grown without such a cue exposure. Dogwhelks drilled at the thinnest parts of the shell but, nonetheless, the consumed cue-exposed mussels had thicker shells at the borehole than the consumed mussels not exposed to cues, which likely explains the observed difference in handling time. As handling time normally decreases predation success, this study indicates that the plastic structural modifications in mussels triggered by dogwhelk cues in the field hinder predation by these drilling predators.

Establishment of a natural floral variant of Shepherd’s purse in the wild: analysis of life-history traits in ‘Capsella apetala’ (Brassicaceae)

Background and aims – Molecular studies in model systems have pushed forward our understanding of floral developmental genetics, but the evolutionary significance of such modifications in natural populations is rather unexplored. To improve our knowledge in this field, the sympatric occurrence of two floral variants of Capsella bursa-pastoris (L.) Medik. in the wild appears to be an ideal model system. In our study, wild- type plants showing small white petals and the homeotic variant ' Stamenoid petals ' ( Spe also known as Capsella apetala Opiz), in which petals are replaced by additional stamens, will be compared to evaluate potential ecological differentiation.Material and methods – Progenies from field collections were used in common garden experiments to detect possible differences in several life-history traits involved in the reproductive fitness of both variants. A second experiment was intended to shed light on the relative hybridization rate among floral variants, using the enzyme aspartate aminotransferase (AAT) as a molecular marker.Results – Comparing fitness revealed that the two variants invested differently into their progeny. Wild-type plants showed more fruits per plant, whereas Spe showed higher investment in seeds per fruit. However, the overall reproductive output (seeds/plant) is almost equal. Wild-type donates more pollen for cross- fertilization, because floral visits are more common in this variant. Furthermore, both variants are separated in the onset of flowering, with Spe having a significant later onset of flowering.Conclusion – We conclude that the maintenance of the floral variant within a broad wild-type population is driven by complementary mechanisms including high rates of self-fertilization and ecological differentiation. Taking into account that fitness is not reduced in Spe, the floral variant might in fact have the potential to be a promising model to study speciation at an early stage.

Comprehensive epigenetic analysis of Notch pathway in high-grade serous ovarian cancer

Objective: Gene methylation and other epigenetic modifications of gene regulation have been implicated in the growth of ovarian cancer, but the clinical significance of such modifications in the Notch pathway in high-grade serous ovarian cancer (HGS-OvCa) is not well understood. We used The Cancer Genome Atlas (TCGA) data to study the clinical relevance of epigenetic modifications of Notch pathway genes.

Epigenetic analysis of the Notch superfamily in high-grade serous ovarian cancer

ObjectivesGene methylation and other epigenetic modifications of gene regulation have been implicated in the growth of ovarian cancer, but the clinical significance of such modifications in the Notch pathway in high-grade serous ovarian cancer (HGS-OvCa) is not well understood. We used The Cancer Genome Atlas (TCGA) data to study the clinical relevance of epigenetic modifications of Notch superfamily genes. MethodsWe analyzed the interaction of DNA methylation and miRNAs with gene expression data for Notch superfamily members with the Spearman rank correlation test and explored potential relationships with overall survival (OS) with the log-rank test. We downloaded clinical data, level 3 gene expression data, and level 3 DNA methylation data for 480 patients with stage II–IV HGS-OvCa from the TCGA data portal. Patients were randomly divided into training and validation cohorts for survival analyses. In each set, patients were grouped into percentiles according to methylation and microRNA (miRNA) or messenger RNA (mRNA) levels. We used several algorithms to predict miRNA–mRNA interaction. ResultsThere were significant inverse relationships between methylation status and mRNA expression for PPARG, CCND1, and RUNX1. For each of these genes, patients with a lower methylation level and higher expression level had significantly poorer OS than did patients with a higher methylation level and lower expression level. We also found a significant inverse relationship between miRNAs and mRNA expression for CCND1, PPARG, and RUNX1. By further analyzing the effect of miRNAs on gene expression and OS, we found that patients with higher levels of CCND1, PPARG, and RUNX1 expression and lower expression levels of their respective miRNAs (502-5p, 128, and 215/625) had significantly poorer OS. ConclusionsEpigenetic alterations of multiple Notch target genes and pathway interacting genes (PPARG, CCND1, and RUNX1) may relate to activation of this pathway and poor survival of patients with HGS-OvCa.

NEDDylation regulates E2F‐1‐dependent transcription

The ubiquitin-like molecule NEDD8 modifies cullin-RING ubiquitin E3 ligases. NEDD8 has been shown to have a few additional substrates, but the extent to which this modification targets non-cullins and the functional significance of such modifications remain unclear. Here, we demonstrate that the cell-cycle-regulating transcription factor E2F-1 is a substrate for NEDD8 post-translational modification. NEDDylation results in decreased E2F-1 stability, lower transcriptional activity and slower cell growth. The lysine residues in E2F-1 targeted for NEDDylation can also be methylated, pointing to a possible interplay between these modifications. These results identify a new mode of E2F-1 regulation and highlight the emerging role of NEDD8 in regulating transcription factor stability and function.

Neuronal-glial and synaptic remodelling in the adult hypothalamus in response to physiological stimuli.

Activation of certain neurosecretory systems of the mammalian hypothalamus induces remodelling of the conformation of their neurons and glial cells. During stimulation of the hypothalamo-neurohypophysial system, astrocytic coverage of oxytocinergic somata and dendrites diminishes and their surfaces become extensively juxtaposed. In the neurohypophysis and median eminence, stimulation evokes a retraction of glial processes and an increase in the contact area between neurosecretory terminals and the perivascular space. These changes are reversible and glial coverage returns to normal upon cessation of stimulation. Neuronal-astrocytic rearrangements also occur in the arcuate nucleus in response to changes in sex steroid levels. The significance of such modifications is a matter of speculation. In the hypothalamic nuclei they may permit synaptic remodelling that takes place concurrently; in the neurohaemal structures they may facilitate neuropeptide release. We know little about the cellular mechanisms involved but glia and neurons of these systems express certain molecules implicated in cell-cell interactions in the developing central nervous system, such as the polysialylated isoform of the neural cell adhesion molecule; this may allow them to manifest their capacity for morphological plasticity in adulthood. The factors inducing the changes vary in the different structures: while oxytocin, in synergy with steroids, appears essential to the induction of the changes in the oxytocinergic system, oestrogen alone is critical in the arcuate nucleus; in the neurohypophysis noradrenaline appears important.

Dynamic and Differential in Vivo Modifications of the Isoform HMGA1a and HMGA1b Chromatin Proteins

Most naturally occurring mammalian cancers and immortalized tissue culture cell lines share a common characteristic, the overexpression of full-length HMGA1 (high mobility group A1) proteins. The HMGA1 protooncogene codes for two closely related isoform proteins, HMGA1a and HMGA1b, and causes cancerous cellular transformation when overexpressed in either transgenic mice or "normal" cultured cell lines. Previous work has suggested that the in vivo types and patterns of the HMGA1 post-translational modifications (PTMs) differ between normal and malignant cells. The present study focuses on the important question of whether HMGA1a and HMGA1b proteins isolated from the same cell type have identical or different PTM patterns and also whether these isoform patterns differ between non-malignant and malignant cells. Two independent mass spectrometry methods were used to identify the types of PTMs found on specific amino acid residues on the endogenous HMGA1a and HMGA1b proteins isolated from a non-metastatic human mammary epithelial cell line, MCF-7, and a malignant metastatic cell line derived from MCF-7 cells that overexpressed the transgenic HMGA1a protein. Although some of the PTMs were the same on both the HMGA1a and HMGA1b proteins isolated from a given cell type, many other modifications were present on one but not the other isoform. Furthermore, we demonstrate that both HMGA1 isoforms are di-methylated on arginine and lysine residues. Most importantly, however, the PTM patterns on the endogenous HMGA1a and HMGA1b proteins isolated from non-metastatic and metastatic cells were consistently different, suggesting that the isoforms likely exhibit differences in their biological functions/activities in these cell types.

Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon.

Proton NMR analyses have been made to elucidate the conformational characteristics of modified nucleotides as found in the first position of the anticodon of tRNA [derivatives of 5-methyl-2-thiouridine 5'-monophosphate (pxm5s2U) and derivatives of 5-hydroxyuridine 5'-monophosphate (pxo5U)]. In pxm5s2U, the C3'-endo form is extraordinarily more stable than the C2'-endo form for the ribose ring, because of the combined effects of the 2-thiocarbonyl group and the 5-substituent. By contrast, in pxo5U, the C2'-endo form is much more stable than the C3'-endo form, because of the interaction between the 5-substituent and the 5'-phosphate group. The enthalpy differences between the C2'-endo form and the C3'-endo form have been obtained as 1.1, -0.7, and 0.1 kcal/mol (1 cal = 4.184 J) for pxm5s2U, pxo5U, and unmodified uridine 5'-monophosphate, respectively. These findings lead to the conclusion that xm5s2U in the first position of the anticodon exclusively takes the C3'-endo form to recognize adenosine (but not uridine) as the third letter of the codon, whereas xo5U takes the C2'-endo form as well as the C3'-endo form to recognize adenosine, guanosine, and uridine as the third letter of the codon on ribosome. Accordingly, the biological significance of such modifications of uridine to xm5s2U/xo5U is in the regulation of the conformational rigidity/flexibility in the first position of the anticodon so as to guarantee the correct and efficient translation of codons in protein biosynthesis.

Lactic Fermentations of Dairy Foods and Their Biological Significance

Fermentation is one of the methods of food preservation. Over years this method has evolved into a sophisticated art. Milk can be fermented by bacteria, yeasts, and molds to produce a variety of products such as yogurt, cheeses, sour cream, and buttermilk. Modification of milk by microorganisms affects both the physicochemical properties and the economic value of milk. The physicochemical changes are manifested in such properties as flavor, texture, and nutritive value. The economic value of milk is enhanced by the increased storage life of the products. A majority of these modifications are by the enzymes origination from microorganisms and acting on the protein, lipids, and carbohydrates in milk. the products resulting from such changes introduce variety into human diets.changes induced in milk constituents by microorganisms are discussed with regard to flavor, texture, and nutritive value. The significance of such modifications also is considered in terms of microbial synthesis of vitamins, natural antibiotics, natural anticarcinogenic substances, and enzymes. Although the mechanisms of these modifications are not yet understood, studies under in vitro conditions to delineate the physiological implications and nutritional and therapeutic significance of such modifications are described.

Phosphorylation of chromosomal proteins as a function of age and its modulation by calcium

In vitro phosphorylation of histones and non histone chromosomal proteins (NHCP) and its modulation by calcium have been studied using slices of cerebral hemisphere of rats of various ages. Phosphorylation of histones decreases, and that of NHCP increases with increasing age. Calcium inhibits phosphorylation of histones of young and adult rats, but stimulates phosphorylation of NHCP. Phosphorylation of H1 and H4 histones is greater than that of other histones, and calcium inhibits their phosphorylation more markedly than of other histones. The significance of such modifications of chromosomal proteins in the aging process is discussed.