Short-term Microcosm Experiments Research Articles

A closer look at plastic colonisation: Prokaryotic dynamics in established versus newly synthesised marine plastispheres and their planktonic state

The taxonomy of marine plastisphere communities has been extensively studied, demonstrating the ubiquity of hydrocarbonoclastic bacteria of potential biotechnological significance. However, prokaryotic functioning on plastic surfaces has received limited attention, and the question of whether these microorganisms are active and expressing specific molecular mechanisms underpinning plastisphere colonisation remains to be addressed. The aim of this study was to investigate the plastic colonisation process, to identify the active taxa involved in biofilm formation and the mechanisms used to initiate colonisation. To achieve this, a marine plastisphere characterised by active hydrocarbonoclastic genera was used as the inoculum for a short-term microcosm experiment using virgin low-density polyethylene as the sole carbon source. Following incubation for 1 and 2 weeks (representing early and late colonisation, respectively), a taxonomic and comparative metaproteomic approach revealed a significant shift in plastisphere diversity and composition, yet highlighted stability in the predominance of active Proteobacteria spanning 16 genera, including Marinomonas, Pseudomonas, and Pseudoalteromonas. Relative quantification of 1762 proteins shared between the initial plastisphere inoculum, the microcosm plastisphere and the planktonic cells in the surrounding artificial seawater, provided insights into the differential regulation of proteins associated with plastisphere formation. This included the upregulation of proteins mediating cellular attachment in the plastisphere, for example flagellin expressed by Marinomonas, Cobetia, Pseudoalteromonas, and Pseudomonas, and curli expressed by Cobetia. In addition to the differential regulation of energy metabolism in Marinomonas, Psychrobacter, Pseudomonas and Cobetia within the plastisphere relative to the surrounding seawater. Further, we identified the upregulation of amino acid metabolism and transport, including glutamine hydrolysis to glutamate in Marinomonas and unclassified Halomonadaceae, potentially coupled to ammonia availability and oxidative stress experienced within the plastisphere. Our study provides novel insights into the dynamics of plastisphere formation and function, highlighting potential targets for regulating plastisphere growth to enhance plastic bioremediation processes.

New avenues for potentially seeking microbial responses to climate change beneath Antarctic ice shelves.

Several efforts have been undertaken to predict the response of microbes under climate change, mainly based on short-term microcosm experiments under forced conditions. A common concern is that manipulative experiments cannot properly simulate the response of microbes to climate change, which is a long-term evolutionary process. In this proof-of-concept study with a limited sample size, we demonstrate a novel approach yet to be fully explored in science for accessing genetic information from putative past marine microbes preserved under Antarctic ice shelves before the industrial revolution. This potentially allows us estimating evolutionary changes as exemplified in our study. We advocate for gathering a more comprehensive Antarctic marine ice core data sets across various periods and sites. Such a data set would enable the establishment of a robust baseline, facilitating a better assessment of the potential effects of climate change on key genetic signatures of microbes.

Unraveling the interaction effects of soil temperature and moisture on soil nematode community: A laboratory study

Soil nematode communities and their functions are simultaneously influenced by abiotic factors such as temperature and soil moisture. However, the complex interaction effects of these factors have not been clearly demonstrated, limiting our understanding of soil biodiversity and functions under different climate scenarios. Here, we conducted a short-term microcosm experiment, implementing three temperature treatments (20 °C, 25 °C, and 30 °C) combined with two soil moisture treatments (50% and 80% water-holding capacity). We comprehensively assessed the changes in abundance, diversity, composition, and functions (carbon footprints) of soil nematode communities under these different treatments. Our findings revealed that temperature and moisture did not have significant effects on the richness or Shannon diversity of nematodes, while they did have significant impacts on other properties. We found that the interaction effect between temperature and moisture had a greater influence on total abundance compared to their independent effects. Moisture emerged as the primary driver of nematode community composition, followed by the interaction term, while temperature exhibited the least influence. Contrary to expectations, increasing temperature did not cause a shift in the community towards small-bodied genera when considering intraspecific variability in body mass. However, elevating moisture level led to an increase in community-weighted mean body mass, irrespective of intraspecific variability. Consequently, the body-mass-related footprints varied among treatments when considering intraspecific variability, with the dominant influence arising from the interaction effect. Overall, our study highlights the dominant interaction effect of temperature and soil moisture on multiple ecological properties of nematode communities. Additionally, we underscore the importance of incorporating intraspecific trait variability when assessing the responses and functions of nematodes under distinct environmental conditions.

Impacts and mechanism of biodegradable microplastics on lake sediment properties, bacterial dynamics, and greenhouse gasses emissions

The accumulation of microplastics (MPs) in freshwater ecosystems plays a vital role in greenhouse gases (GHGs) emissions from lake sediment by altering sediment properties and microbial communities. Thus, a short-term microcosm experiment was performed to explore the effect of conventional polyethylene (PE) and biodegradable Poly (butylene-adipate-co-terephtalate) (PBAT) MPs on carbon dioxide (CO2) and methane (CH4) emissions from lake sediment and associated microbial community. The results indicated that at 1.0 % concentration, the cumulative CO2 emissions were increased by 16.8 % and the cumulative CH4 emissions were increased more than four times following the addition of biodegradable MPs compared to conventional MPs, which was due to the more dissolved organic carbon (DOC) provided by biodegradable MPs for microbial respiration. Furthermore, the cumulative CO2 and CH4 emissions significantly (p < 0.05) increased with the increasing concentrations of biodegradable MPs. Notably, the accumulation of MPs could weaken the microbial stress from requirements of energy and substrate, and increase the microbial biomass carbon (MBC) value, thus eventually improving the respiratory capacity of microbes. In addition, the biodegradable MPs significantly increased the abundance of microbes, such as Firmicutes, Myxococcota and Actinobacteriota, which were related to the function of anaerobic respiration. Overall, we concluded that the abundant DOC provided by biodegradable MPs could promote the growth of microbes in lake sediment, and they could change the structure and diversity of the microbial community, which would eventually enhance the anaerobic respiration of microbes and aggravate the GHGs emissions.

Influence of Rice Husk Biochar on Soil Nematode Community under Upland and Flooded Conditions: A Microcosm Experiment

Biochar has the potential for improving soil properties and supporting ecological functions, but it has negative impacts on soil organisms in some cases. This study aimed to assess the effect of biochar application at rates of 0 (B0), 5 Mg ha−1 (B5), 20 Mg−1 (B20), and 40 Mg ha−1 (B40) on soil nematode community under upland and flooded conditions in a short-term microcosm experiment. After biochar application, soil was incubated for 2 to 8 weeks and nematodes were identified for community composition, trophic structures, functional guilds, maturity index and metabolic footprints. The chemical properties of the soils were also analyzed. General linear model revealed that biochar increased soil pH, EC, NO3−-N, available phosphorus, total C, and C/N ratio, particularly in the highest application rate and shifted the composition of nematodes. The greatest abundances of omnivores (Mesodorylaimus, Thornenema), predator (Nygolaimus) and functional guilds of cp5 were observed in B5, resulting in greatest structure footprint and composite footprint, (omnivorous + predator) footprint and total biomass in B5. While abundances of nematodes tended to decrease with the biochar applicate rates, the abundance of Prismatolaimus was the highest in B40. During the 8-week incubation period, the abundances of Achromadora, Alaimus, Aporcelaimellus, Cryptonchus, Mononchus, and Tobrilus remained stable in upland conditions. Under flooded conditions, the abundances of almost all taxa were markedly lower than those under upland conditions irrespective of biochar application, except for Acrobeloides, Alaimus, Aphelenchoides, and Ditylenchus. We highlighted that 5 Mg ha−1 of rice husk biochar can be the optimum in shaping the nematode community.

Insignificant Response of Bacterioplankton Community to Elevated pCO2 During a Short-Term Microcosm Experiment in a Subtropical Eutrophic Coastal Ecosystem.

Ocean acidification, as one of the major consequences of global climate change, markedly affects multiple ecosystem functions in disparate marine environments from coastal habitats to the deep ocean. Evaluation of the responses of marine microbial community to the increasing partial pressure of CO2 (pCO2) is crucial to explore the microbe-driven biogeochemical processes in the future ocean. In this study, a microcosm incubation of eutrophic coastal water from Xiamen Bay under elevated pCO2 (about 1,000 μatm) and control (ambient air, about 380–410 μatm) conditions was conducted to investigate the effect of ocean acidification on the natural bacterioplankton community. During the 5-day incubation period, the chlorophyll a concentration and bacterioplankton abundance were not significantly affected by increased pCO2. Hierarchical clustering and non-metric multidimensional scaling analysis based on Bray-Curtis similarity among the bacterioplankton community derived from the 16S rRNA genes revealed an inconspicuous impact of elevated pCO2 on the bacterial community. During the incubation period, Proteobacteria, Bacteroidetes, Actinobacteria, Cyanobacteria, and Epsilonbacteraeota were predominant in all microcosms. Despite the distinct temporal variation in the composition of the bacterioplankton community during the experimental period, statistical analyses showed that no significant difference was found on bacterioplankton taxa between elevated pCO2 and control, indicating that the bacterioplankton at the population-level were also insensitive to elevated pCO2. Our results therefore suggest that the bacterioplankton communities in the fluctuating and eutrophic coastal ecosystems appear to be adaptable to the short-term elevated pCO2.

Effects of microplastics on soil carbon dioxide emissions and the microbial functional genes involved in organic carbon decomposition in agricultural soil

The accumulation of microplastics (MPs) in agricultural fields can not only disguise soil organic carbon (SOC) storage but also affect the production of carbon dioxide (CO2) by microbial decomposition. However, little is known about the impact of this emerging pollutant on soil CO2 emissions and the functional genes related to SOC degradation. In the present study, a short-term (30-day) microcosm experiment was performed to investigate the effects of virgin and aged low-density polyethylene (LDPE) MPs on soil CO2 emissions. We also measured functional gene abundances related to starch (sga), hemicellulose (abfA, manB and xylA), cellulose (cex) and lignin (lig and mnp) degradation through a high-throughput quantitative-PCR-based chip. Compared with the soils without MPs, low doses (0.01% and 0.1%) of both virgin and aged MPs had negligible effects on SOC decomposition, whereas a high dose (1.0%) of these two MPs significantly (p < 0.05) accelerated the production of CO2 in soils by 15–17%, showing a dose-dependent effect. The presence of MPs did not significantly affect soil dissolved organic carbon or microbial biomass carbon. A higher metabolic quotient at 1.0% MP concentration indicated that the microbes were stressed and needed more substrates and energy during their metabolic process, which could likely explain the increase in CO2 emission induced by this dose of MPs. Exposure to virgin MPs significantly reduced the functional genes related to hemicellulose (abfA and manB) degradation, whereas increasing the aged MPs concentrations significantly decreased the abundances of functional genes encoding starch (sga), hemicellulose (abfA, manB and xylA), and cellulose (cex) hydrolysis. Overall, we conclude that the low dose (<0.1%) of MPs in the soils has a negligible effect on the production of CO2, but this factor should be considered in evaluating the global C budget in future research as this contaminant reaches a certain threshold (1.0%).

The Influence of pCO2-Driven Ocean Acidification on Open Ocean Bacterial Communities during A Short-Term Microcosm Experiment in the Eastern Tropical South Pacific (ETSP) off Northern Chile.

Due to the increasing anthropogenic CO2 emissions, Ocean Acidification (OA) is progressing rapidly around the world. Despite the major role that microorganisms play on the marine biogeochemical cycling and ecosystem functioning, the response of bacterial communities upon OA scenarios is still not well understood. Here, we have conducted a detailed characterization of the composition and relative abundance of bacterial communities in the water column of an open-ocean station in the Eastern Tropical South Pacific (ETSP) off northern Chile and their interactions with environmental factors. In addition, through a short-term microcosm experiment, we have assessed the effect of low pH/high pCO2 conditions over the abundance and genetic diversity of bacterial communities. Our results evidence a clear partitioning of community composition that could be attributed mostly to dissolved oxygen. However, our experimental approach demonstrated that low pH/high pCO2 conditions might modify the structure of the bacterial community, evidencing that small changes in pH may impact significantly the abundance and diversity of key microorganisms. This study constitutes a first step aiming to provide insight about the influence of changing carbonate chemistry conditions on natural bacterial communities and to shed light on the potential impact of OA in biogeochemical cycles on the ETSP region.

Changes in protistan abundance and bacterial activity in response to the addition of eukaryotic inhibitors to natural lake water

Abstract Two short-term (24 h and 48 h) microcosm experiments using natural waters from three eutrophic lakes (Masurian Lake District, Poland) were performed to assess the impact of eukaryotic inhibitors (a combination of cycloheximide and colchicine) on the abundance of nanoflagellates and small ciliates in the &lt;15 µm fraction. The results showed that eukaryotic inhibitors were not completely effective against either group of protists; however, they reduced their numbers considerably. At 24 h of the experiment, 41, 15, and 7% of nanoflagellate and 48, 23, and 3% of ciliate abundances were not lysed, depending on the lake from which water was taken. However, after 48 h of incubation, only below 7% of nanoflagellates and 33, 40, and 17% of ciliates were present in the treatments with inhibitors. Our results suggest that inhibitors may indirectly change bacterial growth and activity, but they do not definitively inhibit these processes. It was concluded that eukaryotic inhibitors are more effective against small nanoflagellates than larger nanoflagellates and ciliates. Concentrations of inhibitors higher than 200 and 100 mg l−1 for cycloheximide and colchicine, respectively, and an incubation time longer than 24 h also seemed to be more appropriate to achieve the complete inhibition of protists.

Biochar suppresses N2O emissions and alters microbial communities in an acidic tea soil.

Biochar has been considered as a promising soil amendment for improving fertility and mitigating N2O emission from the arable land. However, biochar's effectiveness in acidic tea soil and underlying mechanisms are largely unknown. We conducted a short-term microcosm experiment using two biochars (1% w/w, LB, generated from legume and NLB, non-legume biomass, respectively) to investigate the effects of biochar amendments on soil chemical properties, N2O emission, and microbial community in an acidic soil. Soil and headspace gas samples were taken on 1, 10, and 30 day's incubation. Biochar amendment increased soil pH and DOC, however, significantly reduced soil inorganic N. Both biochars at ~ 1% addition had little effect on microbial CO2 respiration but suppressed soil N2O emission by ~ 40% during the incubation. The divergence in N2O efflux rates between soils with and without biochar addition aligned to some degree with changes in soil pH, inorganic N, and dissolved organic C (DOC). We also found that biochar addition significantly modified the fungal community structure, in particular the relative abundance of members of Ascomycota, but not the bacterial community. Furthermore, the copy number of nosZ, the gene encoding N2O reductase, was significantly greater in biochar-amended soils than the soil alone. Our findings contribute to better understanding of the impact of biochar on the soil chemical properties, soil N2O emission, and microbial community and the consequences of soil biochar amendment for improving the health of acidic tea soil.

Parasite-induced vulnerability to predation in larval anurans.

Within communities, pathogens and parasites have the potential to indirectly influence predator-prey interactions. For instance, prey that exhibit pathology or altered traits (e.g. behavioral shifts) following infection could be more prone to predation, which is known as parasite-induced vulnerability to predation (PIVP). PIVP has been frequently documented for pathogens with trophic transmission, because predators are often critical in the pathogen's life cycle. However, for pathogens without trophic transmission, PIVP can lead to a healthy herds effect, thereby reducing transmission in the system. In this study, we explored whether the pathogen ranavirus (family Iridoviridae) enhances vulnerability of 4 species of larval amphibians (spring peepers Pseudacris crucifer, gray treefrogs Hyla versicolor, American toads Anaxyrus americanus, and northern leopard frogs Lithobates pipiens) to 2 common tadpole predators (larval green darners Anax junius [hereinafter Anax] and adult water bugs Belostoma flumineum [hereinafter Belostoma]). For each anuran species, we conducted short-term microcosm experiments to assess predation rates on individuals that were or were not exposed to virus. For 3 of the 4 species, we found that exposure to ranavirus decreased survival rates with Anax between 2- and 9-fold. However, we did not see the same trend with Belostoma, which indicates that predator identity is important in this interaction. More specifically, the higher efficiency of Anax in capturing and consuming prey, relative to Belostoma, may allow Anax to capitalize on trait changes induced by virus exposure and enhance the PIVP effect. Our results indicate that trait-mediated indirect effects could play a role in creating healthy herds in amphibian communities.

Inter- and intraspecific consumer trait variations determine consumer diversity effects in multispecies predator-prey systems

AME Aquatic Microbial Ecology Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsSpecials AME 81:243-256 (2018) - DOI: https://doi.org/10.3354/ame01866 Inter- and intraspecific consumer trait variations determine consumer diversity effects in multispecies predator-prey systems Sabine Flöder1,*, Lara Bromann1,2, Stefanie Moorthi1 1Institute for Chemistry and Biology of the Marine Environment [ICBM], Carl-von-Ossietzky University Oldenburg, Germany 2FB Umweltwissenschaften, Leuphana University Lüneburg, Germany *Corresponding author: sabine.floeder@uni-oldenburg.de ABSTRACT: This study investigated how inter- and intraspecific trait variations determine consumer diversity loss effects in a short-term microcosm experiment, using consumer and prey biovolume production and composition as the main response variables. Three levels of ciliate diversity were created, all feeding on a 3-species microalgal prey mixture. Ciliates differed in consumer specialisation, feeding on 1 (specialist, S), 2 (intermediate, I) or all 3 (generalist, G) microalgal species. Intraspecific trait variation was incorporated by including 3 different clones of I and setting up ciliate combinations with either monoclonal or polyclonal populations of I. Both increasing inter- and intraspecific consumer diversity increased total ciliate biovolume. On the species level, total ciliate biovolume was high wherever G was included, indicating a positive selection effect for a competitively superior species. Polyclonal I monocultures exceeded the biovolume of all monoclonal ones (transgressive overyielding) based on complementary differences of clone-specific feeding niches. This effect was also observed in multispecies combinations. Both inter- and intraspecific consumer diversity decreased prey evenness. Despite being able to feed on all prey species, G displayed specific grazing preferences within its dietary niche. Furthermore, G exhibited an induced offence, forming giant cells that fed on other ciliates. S responded with an inducible defence, escaping predation by the intraguild predator. Overall, our study demonstrated highly complex trophic interactions driven by consumer selectivity, grazing rates, selective feeding and phenotypic plasticity, and indicated that both inter- and intraspecific consumer trait variations determine the consequences of consumer diversity loss on ecosystem functioning. KEY WORDS: Consumer diversity · Consumer trait variation · Intraspecific trait variation · Predator-prey system · Ciliates · Specialist · Generalist Full text in pdf format Supplementary material PreviousNextCite this article as: Flöder S, Bromann L, Moorthi S (2018) Inter- and intraspecific consumer trait variations determine consumer diversity effects in multispecies predator-prey systems. Aquat Microb Ecol 81:243-256. https://doi.org/10.3354/ame01866 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in AME Vol. 81, No. 3. Online publication date: May 16, 2018 Print ISSN: 0948-3055; Online ISSN: 1616-1564 Copyright © 2018 Inter-Research.

Decay of low-density polyethylene by bacteria extracted from earthworm's guts: A potential for soil restoration

Low-density polyethylene (LDPE) is the most abundant source of microplastic pollution worldwide. A recent study found that LDPE decay was increased and the size of the plastic was decreased after passing through the gut of the earthworm Lumbricus terrestris (Oligochaeta). Here, we investigated the involvement of earthworm gut bacteria in the microplastic decay. The bacteria isolated from the earthworm's gut were Gram-positive, belonging to phylum Actinobacteria and Firmicutes. These bacteria were used in a short-term microcosm experiment performed with gamma-sterilized soil with or without LDPE microplastics (MP). We observed that the LDPE-MP particle size was significantly reduced in the presence of bacteria. In addition, the volatile profiles of the treatments were compared and clear differences were detected. Several volatile compounds such as octadecane, eicosane, docosane and tricosane were measured only in the treatments containing both bacteria and LDPE-MP, indicating that these long-chain alkanes are byproducts of bacterial LDPE-MP decay.

Combined, short-term exposure to reduced seawater pH and elevated temperature induces community shifts in an intertidal meiobenthic assemblage

In future global change scenarios the surface ocean will experience continuous acidification and rising temperatures. While effects of both stressors on marine, benthic communities are fairly well studied, consequences of the interaction of both factors remain largely unknown. We performed a short-term microcosm experiment exposing a soft-bottom community from an intertidal flat in the Westerscheldt estuary to two levels of seawater pH (ambient pHT = 7.9, reduced pHT = 7.5) and temperature (10 °C ambient and 13 °C elevated temperature) in a crossed design. After 8 weeks, meiobenthic community structure and nematode staining ratios, as a proxy for mortality, were compared between treatments and structural changes were related to the prevailing abiotic conditions in the respective treatments (pore water pHT, sediment grain size, total organic matter content, total organic carbon and nitrogen content, phytopigment concentrations and carbonate concentration). Pore water pHT profiles were significantly altered by pH and temperature manipulations and the combination of elevated temperature and reduced pH intensified the already more acidic porewater below the oxic zone. Meiofauna community composition was significantly affected by the combination of reduced pH and elevated temperature resulting in increased densities of predatory Platyhelminthes, reduced densities of Copepoda and Nauplii and complete absence of Gastrotricha compared to the experimental control. Furthermore, nematode staining ratio was elevated when seawater pH was reduced pointing towards reduced degradation rates of dead nematode bodies. The observed synergistic interactions of pH and temperature on meiobenthic communities and abiotic sediment characteristics underline the importance of multistressor experiments when addressing impacts of global change on the marine environment.

How to evaluate the potential occurrence of intraguild predation

Intraguild predation is the combination of exploitative competition and predation among potential competitors that use similar resources. It has the potential to shape population dynamics and community structure. Although there is much empirical evidence for the occurrence of intraguild predation in natural ecosystems, the study of its effects is mainly limited to short-term microcosm experiments. There is, therefore, certain skepticism about its actual significance in nature. A relevant concern is that there is no consensus regarding criteria to evaluate the possible occurrence of intraguild predation in short-term experiments, and methodological differences may therefore underlie apparent inconsistencies among studies. Our purpose here was to evaluate existing criteria to offer guidance for the design of experiments to determine whether two species may potentially engage in intraguild predation. The criteria are based on the condition that intraguild predators need to experience immediate energetic gains when feeding on the intraguild prey. Thus, a relevant experimental design must quantify predation but also fitness benefits of feeding on the other species, i.e. increases in reproduction, somatic growth, or survival.

Feeding selectivity of the invasive mussel Limnoperna fortunei (Dunker, 1857) on a natural phytoplankton assemblage: what really matters?

The aims of this work were to analyse the feeding selectivity of L. fortunei in a natural assemblage of phytoplankton in a short-term microcosm experiment and to assess whether this selectivity is affected by the presence of Rotifera as a secondary, palatable feeding resource. This bivalve preferred Desmidiales, Chlorococcales, Euglenophyceae and Chrysophyceae algae with a maximum linear dimension from 20 to 100 µm. Organisms between 500 and 40 × 103 µm3 belonging to Desmidiales, Chrysophyceae and Euglenophyceae were also positively selected. Volvocales, Cryptophyceae and one group of medium-size Euglenophyceae (Trachelomonas sp.) had a high, negative selectivity index independent of their cell shape or size (Ivlev’s index of feeding selectivity <−0.7). The mussel positively selected Rotifera, and this only had a measurable effect on large Euglenophyceae, which increase their selectivity value in the absence of Rotifera. The non-parametric multiplicative regression showed that selectivity is largely explained by a combination of cell shape, biovolume and the phytoplankton taxa offered (R 2 > 0.8). We concluded that the impact on phytoplankton community structure could be severe, considering that the presence of zooplankton does not have an effect on the majority of phytoplankton groups and that the mussel tends to feed on both items to improve its diet. The negative selection of some phytoplankton taxa is possibly related to the morpho-physiological characteristics of their cell shells.

Antagonism between invasive pest corals Tubastraea spp. and the native reef-builder Mussismilia hispida in the southwest Atlantic

The biological invasion of the scleractinian corals Tubastraea coccinea and Tubastraea tagusensis into the Atlantic has resulted in their juxtaposition with native reef corals. We used microcosm and field experiments to investigate and separate the effects of chemical vs. physical mechanisms potentially responsible for observed antagonistic interactions between the invasive corals and the endemic (southwest Atlantic) reef-building coral Mussismilia hispida. In the short term microcosm experiment M. hispida extruded a substantial amount of mesenterial filaments in an aggressive response to proximity to both invasive species within a few hours. However, in the field only the native coral suffered necrosis, which was visible after only four days. The use of physical barriers to separate chemical and physical effects demonstrated that antagonistic effects were far greater in the absence of a physical barrier than in the partial or complete barrier treatments, so although there is evidence that these invasive corals may produce allelochemicals against possible competitors we demonstrated that the main mechanism Tubastraea spp uses to exclude the native coral species is principally a rapid physical response.

Response of bacterial communities to short-term pyrene exposure in red soil

Pyrene, a representative polycyclic aromatic hydrocarbon (PAH) compound produced mainly from incomplete combustion of fossil fuels, is hazardous to ecosystem health. However, long-term exposure studies did not detect any significant effects of pyrene on soil microorganism. In this study, short-term microcosm experiments were conducted to identify the immediate effect of pyrene on soil bacterial communities. A freshlycollected pristine red soil was spiked with pyrene at 0, 10, 100, 200, and 500 mg·kg−1 and incubated for one day and seven days. The bacterial communities in the incubated soils were analyzed using 16S rRNA sequencing and terminal restriction fragment length polymorphism (TRFLP) methods. The results revealed high bacterial diversity in both unspiked and pyrene-spiked soils. Only at the highest pyrene-spiking rate of 500 mg·kg−1, two minor bacteria groups of the identified 14 most abundant bacteria groups were completely suppressed. Short-term exposure to pyrene resulted in dominance of Proteobacteria in soil, followed by Acidobacteria, Firmutes, and Bacteroidetes. Our findings showed that bacterial community structure did respond to the presence of pyrene but recovered rapidly from the perturbation. The intensity of impact and the rate of recovery showed some pyrene dosage-dependent trends. Our results revealed that different levels of pyrene may affect the bacterial community structure by suppressing or selecting certain groups of bacteria. It was also found that the bacterial community was most susceptible to pyrene within one day of the chemical addition.

Acquired Type III Secretion System Determines Environmental Fitness of Epidemic Vibrio parahaemolyticus in the Interaction with Bacterivorous Protists

Genome analyses of marine microbial communities have revealed the widespread occurrence of genomic islands (GIs), many of which encode for protein secretion machineries described in the context of bacteria-eukaryote interactions. Yet experimental support for the specific roles of such GIs in aquatic community interactions remains scarce. Here, we test for the contribution of type III secretion systems (T3SS) to the environmental fitness of epidemic Vibrio parahaemolyticus. Comparisons of V. parahaemolyticus wild types and T3SS-defective mutants demonstrate that the T3SS encoded on genome island VPaI-7 (T3SS-2) promotes survival of V. parahaemolyticus in the interaction with diverse protist taxa. Enhanced persistence was found to be due to T3SS-2 mediated cytotoxicity and facultative parasitism of V. parahaemolyticus on coexisting protists. Growth in the presence of bacterivorous protists and the T3SS-2 genotype showed a strong correlation across environmental and clinical isolates of V. parahaemolyticus. Short-term microcosm experiments provide evidence that protistan hosts facilitate the invasion of T3SS-2 positive V. parahaemolyticus into a coastal plankton community, and that water temperature and productivity further promote enhanced survival of T3SS-2 positive V. parahaemolyticus. This study is the first to describe the fitness advantage of GI-encoded functions in a microbial food web, which may provide a mechanistic explanation for the global spread and the seasonal dynamics of V. parahaemolyticus pathotypes, including the pandemic serotype cluster O3:K6, in aquatic environments.

Influence of zebra (Dreissena polymorpha) and quagga (Dreissena rostriformis) mussel invasions on benthic nutrient and oxygen dynamics

Although invasive zebra ( Dreissena polymorpha ) and quagga ( Dreissena rostriformis ) mussels are known to increase water column concentrations of nitrogen and phosphorus, the relative roles of direct nutrient release by the mussels and mussel-induced alterations to sediment fluxes are little understood. In short-term microcosm experiments comparing the presence and absence of mussels on sediments from Oneida Lake, New York, USA, both dreissenid species approximately doubled benthic oxygen consumption and fluxes of ammonium. The impact on soluble reactive phosphate (SRP) flux varied from 40% to 140% depending on whether mussels were located in the water column or directly on sediments. The additional flux was attributable directly to release by the mussels, with fluxes from the sediments remaining largely unchanged. However, mussels located directly on sediment surfaces released twice as much SRP as mussels located higher in the water column, with a molar N:P ratio as low as 4:1. The high rate of SRP release by mussels on sediment, possibly caused by mobilization of iron-bound phosphorus from sediment particles in the anoxic guts of the mussels, could contribute to observed increases in SRP, abundance of nuisance algae such as Cladophora , and abundance and toxicity of the cyanobacteria Microcystis in dreissenid invaded ecosystems.