Six children with severe forms of cyanotic congenital heart disease underwent a series of challenge studies in an attempt to clarify the pathophysiology of the hypoglycemia observed in these disorders. The glycemic response to intravenous glucagon positively correlated with the fasting glucose concentration (P<0.01). Following a 26-to 30-hour fast, two of six CCHD children developed hypoglycemia in the absence of significant differences in ketone body, alanine, or insulin concentrations when compared with controls. Blood lactate (P<0.05), pyruvate (P<0.02), plasma glucagon (P<0.05), and cortisol (P<0.01) values were increased at the end of the fast when compared to those in normal fasting children. Intravenous alanine challenge at the end of the fast demonstrated normal glycemic responses in all subjects, regardless of initial plasma glucose or lactate concentrations. One subject had an abnormal rise in lactate and β-hydroxybutyrate following alanine administration. Glucose and alanine turnover studies utilizing stable isotopes revealed normal glucose kinetics but lower alanine flux (8.4±1.1 μmol/kg·min vs 12.3±1.15 μmol/kg/min, P<0.05) and metabolic clearance rates (28.0±3.5 vs 51.0±7.4 ml/kg·min) in the CCHD subjects when compared to normal children. We conclude that hepatic glycogenolytic and glyconeogenic enzyme mechanisms are intact in patients with CCHD. The hypoglycemia is associated with glycogen depletion but not with abnormal secretion of glycoregulatory hormones. The decreased alanine metabolic clearance rate and the increased fasting lactate and pyruvate concentrations may reflect decreased hepatic uptake of these potential gluconeogenic substrates, leading to a functional defect in hepatic gluconeogenesis. These abnormalities may be secondary to decreased hepatic perfusion, but other mechanisms cannot be directly excluded. Six children with severe forms of cyanotic congenital heart disease underwent a series of challenge studies in an attempt to clarify the pathophysiology of the hypoglycemia observed in these disorders. The glycemic response to intravenous glucagon positively correlated with the fasting glucose concentration (P<0.01). Following a 26-to 30-hour fast, two of six CCHD children developed hypoglycemia in the absence of significant differences in ketone body, alanine, or insulin concentrations when compared with controls. Blood lactate (P<0.05), pyruvate (P<0.02), plasma glucagon (P<0.05), and cortisol (P<0.01) values were increased at the end of the fast when compared to those in normal fasting children. Intravenous alanine challenge at the end of the fast demonstrated normal glycemic responses in all subjects, regardless of initial plasma glucose or lactate concentrations. One subject had an abnormal rise in lactate and β-hydroxybutyrate following alanine administration. Glucose and alanine turnover studies utilizing stable isotopes revealed normal glucose kinetics but lower alanine flux (8.4±1.1 μmol/kg·min vs 12.3±1.15 μmol/kg/min, P<0.05) and metabolic clearance rates (28.0±3.5 vs 51.0±7.4 ml/kg·min) in the CCHD subjects when compared to normal children. We conclude that hepatic glycogenolytic and glyconeogenic enzyme mechanisms are intact in patients with CCHD. The hypoglycemia is associated with glycogen depletion but not with abnormal secretion of glycoregulatory hormones. The decreased alanine metabolic clearance rate and the increased fasting lactate and pyruvate concentrations may reflect decreased hepatic uptake of these potential gluconeogenic substrates, leading to a functional defect in hepatic gluconeogenesis. These abnormalities may be secondary to decreased hepatic perfusion, but other mechanisms cannot be directly excluded.