The endangered endemic species Sevan trout (Salmo ischchan Kessler, 1877) is under the threat of extinction and its survival is dependent on restocking by smolts. Thus, there is an urgent need to find an effective solution for restocking wild populations. After developing a theoretical methodology to reveal the most suitable parts of spawning rivers for natural reproduction, we consider the incubation of eggs in the wild as an appropriate method for the validation of the results of the theoretical assessment. Thus, we estimate the eggs’ survival differences in the wild and microcosm conditions which found significant differences in the sac-fry emergence rate in the zones assessed as “partly suitable” and “unsuitable”. Also, the results show that the emergence of eggs in the wild was less than in the microcosm conditions and the success rate of emergence of eyed eggs in the wild was higher than that of the green eggs. The results of one-way ANOVA, correlation and general linear mixed model analyses have in general proven the theoretical assessment but raise some questions on the completeness of using a set of abiotic criteria as the range of success during different experiments varies significantly.