Aqueous two-phase systems are useful for separating biological materials. In this study, the phase diagram of the ternary system of choline chloride, K2HPO4 and water was determined at 298.15K and 0.1MPa. In this regard, the binodal curves between the single liquid phase, liquid-liquid two-phase region, solid-liquid-liquid three-phase region, and solid-liquid two-phase region were determined experimentally. Then, the liquid-liquid two-phase region as an aqueous two-phase system was studied in more details and tie lines of the aqueous two-phase system were obtained. Finally, the partition coefficient of penicillin-G was measured in this aqueous two-phase system. The effect of concentration of the constituents of the aqueous two-phase system on the partition coefficient of penicillin G was investigated. The results show that >96% of penicillin-G extracted to the top phase that is rich in choline chloride. Also, the maximum experimental partition coefficient of penicillin-G was found to be 323.5 that indicates the high capability of the current system in the separation of penicillin G.