This review aims to present an updated lithostratigraphic framework of the northern Danube Basin in Slovakia, consistent with recent shifts in geochronology and depositional system redefinitions based on sedimentology and seismic stratigraphy. Several transgressive–regressive sequences are distinguished: The Lower Badenian (Middle Miocene), represented by the Špačince Fm, mainly occurred in peripheral Blatné and Želiezovce sub-basins. The central part of the Danube Basin formed an elevation during this period, coinciding with the onset of intermediate volcanic activity. The Upper Badenian (Middle Miocene), encompassed within the Pozba Fm, saw the flooding of the central Danube Basin, signifying a change in transport direction. The inception of this cycle is well constrained by recently published multiple 40 Ar/ 39 Ar dating to c. 13.8 Ma. The Sarmatian deposition (Middle Miocene), characterized by the Vráble Fm, also occurred in newly significantly deepened Komjatice and Rišňovce sub-basins, coinciding with a gradual cessation of calc-alkaline volcanism, observed only at the basin's eastern edge. The Pannonian (Upper Miocene) deposition includes lacustrine Ivanka, deltaic Beladice and alluvial Volkovce formations, representing interconnected depositional systems prograding towards Lake Pannon. The subsequent evolution entails a post-rift stage (9.5–6 Ma), primarily marked by the alluvial Volkovce Fm deposition, and basin inversion, with alluvial deposition mostly confined to the basin centre and differentially eroded basin margins (from 6 Ma to the present).