Rice Seedling Establishment Research Articles

Characterization of tadpole shrimp, Triops longicaudatus (Notostraca: Triopsidae), injury to rice and its effect on rice seedling establishment.

Rice seedlings of different stages of development were infested with tadpole shrimp (TPS, Triops longicaudatus [LeConte]), of different sizes in four experiments conducted in a lath house in Colusa, CA, during 2015 and 2016. Tadpole shrimp size was based on carapace length. Rice seedling stages were classified as S0 if no structures were present; S1 if only the coleoptile was present; S2 if the coleoptile and radicle were present; S3-I if the prophyll had emerged; S3-II if the first true leave had emerged but was not unfurled; and V1 if the first true leave was unfurled. Results showed that TPS of all sizes are capable of injuring rice and reducing seedling establishment, with larger TPS causing more seedling establishment reduction than medium or small TPS. The coleoptile, radicle, and roots were the structures most injured by TPS. During the S0 stage, TPS buried seeds, preventing their establishment. Seedling stages S1, S2, and S3-I were found to have the highest risk of injury by TPS, while seedling stage V1 had the lowest. Pearson's correlation between injured seedlings and the normalized number of established seedlings indicates that injury to the coleoptile, root, and radicle combined are the most important in preventing seedling establishment.

Disruption of Amino Acid Transporter OsAAP1 Impairs Rice Seedling Establishment and Nitrate Uptake and Assimilation

Disruption of Amino Acid Transporter OsAAP1 Impairs Rice Seedling Establishment and Nitrate Uptake and Assimilation

Effect of Seed Priming on Germination, Seedling Emergence and Development of Spring Rice Var. Hardinath-1

Poor germination percentage and non-uniform seedling emergence and establishment are major causes of low rice yield in water-deficit arid ecosystems. A seed priming study with a low concentration of MoP, DAP, urea, vitamin C, ZnSO4, sucrose, NaCl, and hydro priming was conducted to assess the seed germination, seedling emergence, establishment, and seedling growth of the spring rice variety Hardinath-1. The experiment was conducted using a completely randomized design with three replications. Two test sets of experiments were carried out using blotting paper rolls and separate sand trays. Germination was observed at intervals of 24 hours up to 7 days, and germination and growth parameters were monitored. The results showed that germination (88.67%) and seedling emergence (88.67%) were high in vitamin C at 7 days after sowing (DAS). Germination energy (81%), germination speed (91.78%), and vigor index (91.78) were higher with seed priming of MoP. The lowest germination (56.44%) was observed with the priming of urea. At 30 DAS, the longest shoot length (19.93 cm) and longest root length (11.79 cm) were observed with the priming of ZnSO4. The highest seedling fresh weight (0.75 g) and dry weight (0.16 g), the highest number of leaves (3.57), and the longest leaf length (11.97 cm) were found with the priming of MoP, NaCl, and ZnSO4, respectively. However, the lowest seedling growth parameters were observed in the control priming. The overall results revealed that seed priming with MoP is an effective tool to enhance the germination percentage and seedling establishment of rice. SAARC J. Agric., 21(2): 81-93 (2023)

Effects of elevated CO2 on rice seedling establishment of MR219 and SRI Malaysia 1 varieties

Effects of elevated CO2 on rice seedling establishment of MR219 and SRI Malaysia 1 varieties

Seed priming with Beauveria bassiana improves growth and salt stress response in rice

One of the most important abiotic factors that hinder plant development, growth, and production is salt stress. In recent years, there has been a lot of interest in the biological treatment of salt stress in plants using beneficial microbes. The fungal endophyte Beauveria bassiana provides a wide variety of ecosystem services, like suppressing insect pests and pathogens and enhancing plant growth. However, the role of B. bassiana in reducing salt stress in plants has not yet been clarified. This study was undertaken to evaluate the performance of B. bassiana isolate BeauA1 primed rice under salt stress by estimating rice growth, stress parameters, and mitigator characteristics. Primarily, rice seeds were primed with BeauA1 and placed in an agar medium with 120 mM NaCl (≈12 dS m−1 salt solution) to observe the role of BeauA1 in the early establishment of rice seedlings in salt conditions. Seed priming with BeauA1 resulted in an enhancement of rice growth attributes under both control and NaCl stress conditions. In the pot experiment, the BeauA1 primed rice seedlings were planted in soil with different concentrations of salt, viz. 8, 10, and 12 dS m−1. The BeauA1 primed rice plants showed improvement in leaf succulence, leaf area, photosynthetic pigments, and shoot relative water content (RWC), leading to enhanced growth under both salt stress and control conditions. The biochemical study found that BeauA1 considerably increased proline content, total soluble sugars, total carbohydrates, and K+/Na+ in leaves. The antioxidant enzymes catalase (CAT), ascorbate peroxidase (APX), peroxidase (POD), glutathione S-transferase (GST), and nonenzymatic antioxidants phenol and flavonoid were upregulated in BeauA1-primed plants under both control and stressed conditions. Further significant reductions of the lipid peroxidation products malondialdehyde (MDA) and hydrogen peroxide (H2O2) by BeauA1 under salt stress were consistent with higher antioxidant activities in salt stress conditions. Principal component analysis (PCA) further validated BeauA1-primed plants' modulation of growth, antioxidant defense, and reduction of MDA and H2O2 in rice under salt-stress conditions. Our findings indicated that utilizing BeauA1 to reduce salt stress would be a useful strategy to increase rice yield in salt-affected regions.

Subsurface banding of blended controlled-release urea can optimize rice yields while minimizing yield-scaled greenhouse gas emissions

Controlled-release urea (CRU) is widely reported to supply crop nitrogen (N) demand with one basal application, thus effectively replacing split applications of urea without diminishing grain yield and N use efficiency (NUE). However, its use for replacement for high-yield split applications of urea (CK) for rice is untested. In addition, the degree to which greenhouse gas (GHG) emissions in rice systems are affected when CRU is substituted for CK remains unclear. During 2017 and 2018, we sampled plant growth and gas emissions in a rice paddy field treated with three CRU types (sulfur-coated urea [SCU], polymer-coated urea [PCU], and bulk blended CRU [BBU]) applied via two methods (surface broadcasting on the soil and subsurface banding at 5 cm depth), with CK as a control. The three CRUs led to different soil NH4+-N dynamics, and the N supply pattern under BBU was more beneficial for rice seedling establishment than under SCU and PCU, resulting in grain yield and NUE comparable to those under CK. CRU type showed no significant effect on either CH4 emissions or N2O emissions, and broadcast CRUs exhibited significantly higher total GHG emissions than CK. However, banded CRUs significantly reduced the total GHG emissions in comparison with broadcast CRUs, by 9.2% averaged across the two years. Reduced CH4 emissions, particularly during the period prior to the middle drainage, contributed largely to the GHG difference. With comparably high grain yield and low total GHG emissions, banded BBU showed a low yield-scaled GHG (GHG emissions divided by grain yield) comparable to that under CK in both years. Overall, our study suggested that N management synchronized with rice demand and contributing to a high NUE tended to minimize yield-scaled GHG. Broadcast CRU can hardly substitute for CK in terms of either grain yield or GHG emissions, but banded BBU is a promising N management strategy for sustaining rice production while minimizing environmental impacts.

Identification of Candidate Genes for Salt Tolerance at the Germination Stage in Japonica Rice by Genome-Wide Association Analysis

Rice salt tolerance at the germination stage directly affects the germination rate and seedling establishment of rice directly seeded in saline soils, which in turn affects yield. In this study, we determined the relative germination potential (RGP) and relative germination index (RGI) under 200 mM salt stress and control conditions using 295 japonica rice accessions. Statistical analysis showed extensive phenotypic variations under salt stress conditions. Twenty-one varieties with an RGP ≥ 80% and an RGI ≥ 80% were screened. Based on genotypic data including, 788,396 single-nucleotide polymorphisms (SNPs), 40 quantitative trait loci (QTL) were localized on rice chromosomes 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, and 12, which were shown to be significantly associated with rice salt tolerance at the germination stage, including 20 for RGP and 20 for RGI, using genome-wide association analysis. Six QTL with ≥ 3 consecutive significant SNP loci and localized in the same LD interval were selected for further analysis. Four rice genes (LOC_Os01g04920, LOC_Os10g38350, LOC_Os10g38470, and LOC_Os10g38489) were selected as important candidates for salt tolerance based on haplotype analysis and functional annotation. The findings could facilitate the development of valuable rice varieties for direct seeding in salinized soil and improve japonica rice salt tolerance at the germination stage through molecular breeding.

Bacterial Endophytes Contribute to Rice Seedling Establishment Under Submergence.

Flooding events caused by severe rains and poor soil drainage can interfere with plant germination and seedling establishment. Rice is one of the cereal crops that has unique germination strategies under flooding. One of these strategies is based on the fast coleoptile elongation in order to reach the water surface and re-establish the contact with the air. Microorganisms can contribute to plant health via plant growth promoters and provide protection from abiotic stresses. To characterise the community composition of the microbiome in rice germination under submergence, a 16S rRNA gene profiling metagenomic analysis was performed of temperate japonica rice varieties Arborio and Lamone seedlings, which showed contrasting responses in terms of coleoptile length when submerged. This analysis showed a distinct microbiota composition of Arborio seeds under submergence, which are characterised by the development of a long coleoptile. To examine the potential function of microbial communities under submergence, culturable bacteria were isolated, identified and tested for plant growth-promoting activities. A subgroup of isolated bacteria showed the capacity to hydrolyse starch and produce indole-related compounds under hypoxia. Selected bacteria were inoculated in seeds to evaluate their effect on rice under submergence, showing a response that is dependent on the rice genotype. Our findings suggest that endophytic bacteria possess plant growth-promoting activities that can substantially contribute to rice seedling establishment under submergence.

Toward understanding the impact of nuisance algae bloom on the reduction of rice seedling emergence and establishment

AbstractCalifornia rice (Oryza sativa L.) production has been recently challenged by the early-season nuisance algae blooms. The algal community in rice is a complex of green algae (Nostoc spongiforme Agardh ex Bornet) and cyanobacteria species that can develop a thick algal mat on the surface of the water and interfere with the emergence and establishment of rice seedlings. The objective of this research was to determine the impact of algal infestation level on rice seedling emergence. A mesocosm study was conducted in 57-L tubs. Three levels of algal infestation (low, medium, and high) were produced by adding fertilizer (N:P) into the tubs at 0:0, 75:35, and 150:70 kg−1 ha. Sixty rice seeds (‘M-206’) were soaked for 24 h and spread into tubs filled with water. Photosynthetic active radiation (PAR), chlorophyll a concentration as the quantitative measure of algae, number of emerged rice seedlings, and their dry biomass were studied during the experiment. Results showed that algal infestation can directly change the amount of light received into the water. Minimum, maximum, and mean percentage of PAR inside the water declined as the algal infestation level increased. As a consequence, rice seedling emergence dropped under the high algal pressure. At very high algal infestation (i.e., chlorophyll a concentration of above 500 µg ml−1), rice seedling emergence was reduced up to 90%. Furthermore, rice seedling emergence was delayed under algal infestation. When algal infestation was low, time to 50% rice seedling emergence (t50) ranged between 5 and 10 d, while at high algal infestation, t50 ranged between 12 and 20 d. Moreover, individual rice seedling biomass was reduced from 1 g to 0.01 g as algal infestation increased. The results from this study indicate that uncontrolled algae at the beginning of the rice-growing season could reduce rice seedling emergence, establishment, and rice stand. Given that algal infestation in fields has a patchy pattern, loss of rice stand in these patches could provide empty niches for other weeds to grow.

Halo- and UV-B priming-mediated drought tolerance and recovery in rice seedlings

Drought stress is a major stress constraint for the growth and establishment of rice seedlings. The objective of this study was to investigate the effects of UV-B and halo priming induced physiochemical changes in the seedling stage of drought-sensitive rice variety exposed to drought stress and recovery. The seedlings of Oryza sativa L. var. Neeraja were UV-B and halo primed and was further subjected to drought stress and recovery. Drought stress induced reactive oxygen species leads to the accumulation of carbonyl content indicating the impairment of photosynthetic machinery and various cellular activities. However, the seed priming resulted in the enhanced production of various metabolites such as proline, amino acids, soluble protein, total phenolics and total soluble sugar. Moreover, it increased the activities of antioxidant enzymes such as superoxide dismutase, catalase and ascorbate peroxidase in rice seedlings exposed to drought stress. After re-watering, all the increased physiochemical parameters of primed and non-primed rice seedlings returned to the levels as in control. The retention of priming memory in seedlings emerged from primed seeds make them more tolerant towards drought and rapid recovery occurs in response to re-watering. Thus, these results suggest that halo and UV-B priming of Oryza sativa seeds is an effective means for reducing drought stress impacts and enhancing the recovery rate from drought at the seedling stage .

Variations in root morphological indices of rice (Oryza sativa L.) induced by seedling establishment methods and their relation to arsenic accumulation in plant tissues

Understanding how the seedling establishment method affects arsenic (As) accumulation in rice is important for safe agricultural production. In a field experiment with three seedling establishment methods and two rice cultivars, the effects of direct seeding (DS), manual transplanting (MT), and seedling throwing (ST) on root morphological indices and the distribution, translocation, and accumulation of As in rice tissues across growth stages were compared. DS method resulted in the greatest accumulation of As in the two rice cultivars and led to more As distributed in aboveground tissues during the entire growth period. Especially in DS brown rice, the concentration of total As increased by 24.0%–40.8%, and that of inorganic As increased by 24.4%–40.0%, compared with the concentrations in MT and ST rice. A multiple regression model was developed with root morphological indices and the total As concentration in brown rice, and the R2 value of the model was 0.819, which was significant at the 1% level. Compared with the other establishment methods, the thinner diameters, smaller volumes, larger specific surface areas, and greater numbers of root tips in DS rice roots across growth stages promoted As uptake. The concentrations of As in root tips were approximately five times greater than those in the root base, and root tips were the key factor determining the difference in As accumulation in rice roots under the different seedling establishment methods. The results of this study demonstrate that the choice of an appropriate rice seedling establishment method is important to avoid the environmental consequences of As contamination and safely produce rice grain. Therefore, despite the current trend of increased use of DS, transplantation is recommended as a safer pattern of rice seedling establishment in As-contaminated areas.

Seed Priming Improved Antioxidant Defense System and Alleviated Ni-Induced Adversities in Rice Seedlings Under N, P, or K Deprivation.

Excess nickel (Ni) concentration in the growing medium severely hampers the plant growth by disturbing oxidative metabolism and nutrient status. The present study was carried out to investigate the individual and interactive effects of Ni toxicity (0.25 mM NiSO4.6H2O) and nutrient deprivation (no-N, no-P, or no-K) on growth, oxidative metabolism, and nutrient uptake in primed and non-primed rice seedlings. Rice seed was primed with distilled water (hydropriming), selenium (5 mg L-1), or salicylic acid (100 mg L-1). The Ni toxicity and deprivation of N, P, or K posed negative effects on the establishment of rice seedlings. The shoot length and fresh biomass were severely reduced by Ni toxicity and nutrient stresses; the minimum shoot growth was recorded for rice seedlings grown under Ni toxicity and no-N stress. The Ni toxicity reduced the root fresh biomass but did not significantly affect the root length of N-deprived seedlings. The rice seedlings with no-P or no-K recorded similar root fresh biomass compared with those grown with sufficient nutrient supply. The Ni toxicity alone or in combination with nutrient stresses triggered the production of reactive oxygen species (ROS) and caused lipid peroxidation in rice seedlings. Among antioxidants, only glutathione reductase and vitamin E were significantly increased by Ni toxicity under different nutrient stress treatments. The Ni toxicity also reduced the concentrations of N particularly in shoot of rice seedlings. The N-deprived (no-N) seedlings recorded maximum Ni concentration in shoot, while K-deprived (no-K) seedlings showed higher Ni concentrations in root. Seed priming with selenium or salicylic acid was effective to alleviate the detrimental effects of Ni toxicity and/or nutrient stresses on rice seedlings. The better growth and greater stress tolerance of primed seedlings was coordinately attributed to lower ROS production, higher membrane stability, strong antioxidative defense system, and maintenance of mineral nutrient status.

UV-B Priming of Oryza sativa Seeds Augments the Innate Tolerance Potential in a Tolerant Variety more Effectively Toward NaCl and PEG Stressors

NaCl and polyethylene glycol-6000 (PEG) stressors are the major limitation factors for successful seedling establishment in rice. The present study was carried out to investigate the role of UV-B priming on the augmentation of stress tolerance in tolerant and sensitive rice seedlings exposed to NaCl and PEG stresses. The result shows that the severity of drought than salinity stress was experienced by emerging rice seedlings as evidenced from increased content of H2O2, O2− and MDA. However, the seed priming with UV-B results in the enhanced production of defense agents, there by activating innate tolerance potential of the seedlings. UV-B priming reduces excess ROS accumulation during NaCl and PEG stresses and thus eliminates the chance of oxidative stress in the rice seedlings. This was possible by enhancing the crucial role of innate immune system, which imparts tolerance toward NaCl and PEG stresses. UV-B seed priming maintained maximal photochemical efficiency of PSI and PSII as well as mitochondrial activity of tolerant and sensitive varieties under NaCl and PEG stresses due to the increased activity of osmolytes and non-enzymatic antioxidants as well as induced expression of enzymatic antioxidants (Cu/Zn SOD, CatA and APx1) and stress-related proteins (Hsp90 and Group3 LEA) in tolerant variety at large, followed by sensitive variety.

Impact of Moisture Stress and Bacillus altitudinis FD48 on Physiological Modulation and Seed Germination in Rice (Oryza sativa L.)

The impact of moisture stress tolerant Bacillus altitudinis FD48 in promotingseed germination and physiological phenomenon under water deficit wasevaluated. Rice seeds (Var CO51) biotized with B.altitudinis FD48 enhancedthe seed germination and seedling vigor index by 51.05% followed byMethylobacterium sp.,(37.3%) moisture stress seedlings (-0.7 Mpa osmoticpotential). Plant biomass, accumulation of proline and compatible sugars alsoincreased in FD48 treated seeds under moisture stress. Further, the alphaamylase activity also accelerated with increase in moisture stress intensity. GCMSprofiling of bacterial primed seed exudates revealed 35 diverse compoundsbelonging to the class viz., sugars, aminoacids, organic acids, flavones, prenollipids and fatty acids. The B. altitudinis FD48 primed seeds alone releasedmethoxy flavone which may act as a lure for recruiting beneficial rhizosphericbacteria. Hence, this study implies that seed priming with B.altitudinis FD48is a promising approach for enhancing seed germination and seedlingestablishment in rice for drought prone areas and subsequent recruitment ofbeneficial bacteria that promotes plant growth and fitness.

New Parameters for Seedling Vigor Developed via Phenomics

Early seedling establishment in rice (Oryza sativa L.), which is measured by primary/secondary tiller, shoot length, biomass, root-related traits, and leaf area index, is an important trait because it helps to compete for light, air, and water for better tolerating various abiotic stresses. Consequently, it can affect the yield. However, there are not many research studies on this subject. Furthermore, previous studies have only measured the target traits once. However, this does not reflect the variation of growth rate during the seedling stage. Thus, two data points, two weeks and four weeks after planting, were used in the current study. As a result, two QTL regions were detected for the growth differences via plant height and green area (reflecting tillering). We expect that these results can be utilized by breeders to evaluate and select vigorous seedlings for their breeding programs.

Transient Heat Stress During Early Seed Development Primes Germination and Seedling Establishment in Rice.

Rice yield is highly sensitive to increased temperature. Given the trend of increasing global temperatures, this sensitivity to higher temperatures poses a challenge for achieving global food security. Early seed development in rice is highly sensitive to unfavorable environmental conditions. Heat stress (HS) during this stage decreases seed size and fertility, thus reducing yield. Here, we explore the transgenerational phenotypic consequences of HS during early seed development on seed viability, germination, and establishment. To elucidate the impact of HS on the developmental events in post-zygotic rice seeds, we imposed moderate (35°C) and severe (39°C) HS treatments initiated 1 day after fertilization and maintained for 24, 48, or 72 h. The transient HS treatments altered the initiation of endosperm (ED) cellularization, seed size and/or the duration of spikelet ripening. Notably, seeds exposed to 24 and 48 h moderate HS exhibited higher germination rate compared to seeds derived from plants grown under control or severe HS. A short-term HS resulted in altered expression of Gibberellin (GA) and ABA biosynthesis genes during early seed development, and GA and ABA levels and starch content at maturity. The increased germination rate after 24 of moderate HS could be due to altered ABA sensitivity and/or increased starch level. Our findings on the impact of transient HS on hormone homeostasis provide an experimental framework to elucidate the underlying molecular and metabolic pathways.

Effect of Pre-Soaking on Seedling Establishment and Pretilachlor Tolerance in Four Rice Genotypes

This study aimed to investigate the effects of pre-soaking for 2 h before seeding on rice seedling establishment after 15-day spraying with pretilachlor. The cytochrome P-450 content, glutathione S-transferase (GSTs), and root activity were also determined. Seedlings of four rice cultivars with contrasting tolerance of pretilachlor were compared. Seed pre-treatment by pre-soaking increased the survivability and growth under pretilachlor spray and improved seedling establishment by increasing P-450, GSTs and root activities. Tolerant genotypes, super hybrid rice, responded better to pre-soaking in direct-seeded rice treated with pretilachlor. It is important for establishment in direct-seeded rice with pre-soaking seeds before sowing in improving emergence and seedling. The positive effect of pre-soaking was proved in all four rice genotypes. Seed pre-soaking will be effective in direct-seeded rice culture to protect rice treated with pre-emergence herbicide and control weedy rice.

Evaluation of Seed Vigor Tests for Predicting Seedling Establishment at Low Temperature in Rice (Oryza sativa L.)

This study was carried out to develop an evaluation method to predict rice seedling establishment (SE) under low-temperature conditions. Two Korean-bred japonica cultivars, Shindongjin and Hopum were used in the experiment. Fresh seeds were treated with an accelerated aging (AA) at 40°C and 100% RH for 1-15 days. The SEs of the fresh and AA seeds were evaluated in nursery beds at 17°C, and their correlation coefficients with seed vigor values measured by 9 test methods including standard germination test (SGT), cool germination test (CLT), cold germination test (CDT), seedling growth rate test (SGRT), ascorbate peroxidase (APX), peroxidase (POX), superoxide dismutase (SOD), catalase (CAT), and α ‐amylase (AMY) activities. The percentage of SE decreased slowly from 75 to 0% with an increasing of AA period from 0 to 15 days. The result of nine vigor tests showed different correlations with the SE. SGT, CLT, SGRT, and POX were significantly correlated with the SE. In the correlation analysis with only short-term aging seeds (1-7 days), the SE was very highly correlated with SGT, CLT, CDT, SGRT, POX, and CAT. These results suggest that seed vigor values measured by several methods including SGT and POX could be used as a reference value to secure SE at low temperatures in nursery bed rice seedling culture.

Role of starch hydrolytic enzymes and phosphatases in relation to under water seedling establishment in rice

The activities of starch hydrolyzing enzymes and phosphatases were studied in seedlings of three Indica rice (Oryza sativa L.) cultivars, namely Panikekoa & T 1471 that showed good capacity for seedling establishment under submergence (tolerant) and IR 42 which had poor under water seedling establishment capacity (susceptible). Under submergence the total amylolytic activities were significantly higher in susceptible cultivars compared to the tolerant cultivars. Likely, the activities of α-amylase, debranching enzymes and α-glucosidase were also higher in susceptible cultivar IR 42. The activities of starch phosphorylase were comparatively higher in tolerant cultivars than susceptible cultivars. Susceptible cultivars maintained higher activities of both acid and alkaline phosphatase as well as phytase activities. Tolerant cultivars with higher seed biomass and low activity of hydrolytic enzymes might sustain the supply of food materials for longer period and hence, survived and established themselves under water.

Globisporangium oryzicola sp. nov., causing poor seedling establishment of directly seeded rice.

A new species, Globisporangium oryzicola, was isolated from directly seeded rice seedlings, and from soils of paddy fields and an uncultivated field. Despite their different origins, five of the seven isolates studied caused poor seedling establishment of rice in a laboratory inoculation experiment. The species is characterized by oogonia with smooth-walled or sometimes one projection, with one to two antheridia, and aplerotic oospores. Hyphal swellings were rarely observed. Phylogenetic analyses based on the internal transcribed spacer region of the ribosomal RNA gene and mitochondrial cytochrome c oxidase subunit 1 and 2 genes confirmed that the species differed from other Globisporangium species. This novel species is described and illustrated in detail.