Seed Setting Rate Research Articles

Rtlp2 enhances thermotolerance in rice

The harmful effects of heat stress on agricultural production are becoming increasingly severe. Thaumatin-like proteins (TLPs) have been demonstrated to play crucial roles in regulating plant resistance to biotic and abiotic stresses. However, their involvement in plant thermotolerance is poorly understood. This study aims to investigate the major-effect gene in a key quantitative trait locus (QTL) associated with rice thermotolerance, namely Rtlp2, which encodes a rice TLP. The Rtlp2 protein was found to be localized in the endoplasmic reticulum (ER). Rice seedlings overexpressing the Rtlp2 gene showed significantly enhanced thermotolerance compared to the wild type, while rtlp2 mutant exhibited increased susceptibility to heat stress. After 48 h of heat stress treatment, rice plants overexpressing Rtlp2 exhibited reduced accumulation of hydrogen peroxide (H2O2) and cell death compared to the wild-type. Conversely, the mutant plants showed the opposite behavior. The results of gene expression level analyses revealed that Rtlp2 positively regulates rice thermotolerance through the modulation of rice heat shock transcription factors (HSFs) and heat shock proteins (HSPs) network. After undergoing natural heat stress in the field, the rice lines overexpressing Rtlp2 showed higher seed setting rate and yield per plant compared to the wild-type. In addition, Rtlp2 has also been found to positively regulate grain length and grain weight in rice. This study provides valuable resources for addressing the challenge of increasing environmental heat and promoting the breeding of heat-tolerant rice varieties.

Evaluating rice lipid content, yield, and quality in response to nitrogen application rate and planting density

To investigate the effects of nitrogen (N) application rate and planting density (D) on the contents of lipid and free fatty acid, fatty acid composition, yield and quality of rice grain, a field experiment was conducted using Koshihikari (japonica) as experimental material from 2021 to 2022 with three N levels (90, 150 and 210 kg ha-1, denoted as N1, N2 and N3, respectively) and three transplanting densities (19.0 × 104, 26.7 × 104 and 40.0 × 104 plants ha-1, denoted as D1, D2 and D3, respectively). The results showed that N application rate and planting density had highly significant impacts only on the contents of free fatty acid and saturated fatty acid, respectively. Increased N and planting density enhanced the contents of lipid (29.41 mg g-1) and free fatty acid (21.47%). The highest values were obtained under N3D3 increasing by 7.02% and 3.23 percentage points, respectively, compared to other treatments. No significant differences in lipid content were found among treatments, whereas free fatty acid exhibited significant differences. The unsaturated fatty acid content increased with increasing N but first decreased and then increased with increasing planting density, while saturated fatty acid content showed the opposite trend. Appropriate N level and planting density improved the relative chlorophyll content and net photosynthetic rate of rice flag leaves, as well as increased grain yield, effective panicle number and spikelete number per panicle, but decreased the seed setting rate. Under N2D2, the relative chlorophyll content and net photosynthetic rate remained relatively high throughout the grain filling stage, resulting in the highest grain yield, with increases of 43.87-47.03% compared to other treatments. A moderate N level improved the milling quality of rice, while increased planting density reduced it. However, both increased N and planting density reduced the appearance quality and cooking and eating quality of rice. Overall, the effects of increasing N application rate and planting density on enhancing rice lipid and free fatty acid contents were limited. A combination of 150 kg ha-1 N application rate and 26.7 × 104 plants ha-1 was recommended for achieving relatively higher yield, lipid content and better grain quality.

Responses of Hybrid Rice (Oryza sativa L.) Plants to Different Application Modes of Nanosized Selenium

The application of selenium (Se) fertilizer not only promotes crop growth but also meets the human demand for Se by increasing the Se content in food. However, the application of nanosized selenium (nano-Se) in hybrid rice (Oryza sativa L.) production has not been reported. Therefore, the present study conducted a field experiment to investigate hybrid rice’s performance under the different application modes of nano-Se. The nano-Se solution was foliar-applied: once at the end of the tillering (S1), heading (S2), and grain-filling (S3) stages or twice at the end of the tillering stage and the heading stage (S4), and at the end of the tillering stage and the grain-filling stage (S5). The treatment without Se application was taken as the control (CK). The results showed that compared with CK, the S1, S2, S3, S4, and S5 treatments increased the grain yield by 27.83–40.60%, 16.06–25.95%, 14.78–40.86%, 20.94–43.79%, and 22.41–43.52%, respectively. The highest or equally highest grain yield was recorded in the S1 treatment. Yield-related traits including the effective panicle number, grain number per panicle, seed-setting rate, and 1000-grain weight significantly increased under nano-Se treatments. Compared with CK, nano-Se treatment increased the SPAD value (chlorophyll content), net photosynthetic rate, and dry matter accumulation by 3.82–32.83%, 2.85–59.55%, and 8.09–55.29%, respectively. An 11.51–572.85% higher grain Se content was recorded in nano-Se treatments than CK. Moreover, nano-Se application significantly enhanced the activity of superoxide dismutase and catalase. In conclusion, the foliar application of nano-Se enhanced the growth and yield formation of hybrid rice plants, and the S1 treatment was considered as the best application due to having the highest yield.

Genome-Wide Analysis of Heat Shock Protein Family and Identification of Their Functions in Rice Quality and Yield

Heat shock proteins (Hsps), acting as molecular chaperones, play a pivotal role in plant responses to environmental stress. In this study, we found a total of 192 genes encoding Hsps, which are distributed across all 12 chromosomes, with higher concentrations on chromosomes 1, 2, 3, and 5. These Hsps can be divided into six subfamilies (sHsp, Hsp40, Hsp60, Hsp70, Hsp90, and Hsp100) based on molecular weight and homology. Expression pattern data indicated that these Hsp genes can be categorized into three groups: generally high expression in almost all tissues, high tissue-specific expression, and low expression in all tissues. Further analysis of 15 representative genes found that the expression of 14 Hsp genes was upregulated by high temperatures. Subcellular localization analysis revealed seven proteins localized to the endoplasmic reticulum, while others localized to the mitochondria, chloroplasts, and nucleus. We successfully obtained the knockout mutants of above 15 Hsps by the CRISPR/Cas9 gene editing system. Under natural high-temperature conditions, the mutants of eight Hsps showed reduced yield mainly due to the seed setting rate or grain weight. Moreover, the rice quality of most of these mutants also changed, including increased grain chalkiness, decreased amylose content, and elevated total protein content, and the expressions of starch metabolism-related genes in the endosperm of these mutants were disturbed compared to the wild type under natural high-temperature conditions. In conclusion, our study provided new insights into the HSP gene family and found that it plays an important role in the formation of rice quality and yield.

Impact of field drying at different initial leaf ages on growth and yield formation of direct seeding rice in Chengdu plain

AbstractTo determine the optimal drying period for direct seeding rice, we conducted experiments using two rice cultivars: hybrid indica (Shuyou 217) and conventional indica (Huang Huazhan). The experiments explored the influence of varying initial leaf development stages on tillering dynamics, leaf area, dry matter production, yield, and yield components in direct seeding rice. The results indicated a significant correlation between the initial leaf development stage and the yield of direct seeding rice. As the initial leaf development stage progressed, the number of effective panicles increased, while key traits affecting panicle yield, such as grain/spikelet? Number per panicle, seed setting rate, and 1000-grain weight, decreased. Additionally, varietal differences in tillering reduction were observed across different leaf development stages. Shuyou 217 exhibited a decrease in heading rate with increasing leaf development stage, whereas Huang Huazhan showed no significant difference. With delayed seeding planting age, both cultivars demonstrated an increasing trend in the leaf area index, initially leading to a rise in effective leaf area proportion, followed by a decline. At the full heading and maturity stages, the dry weight of the stem sheath and panicles per plant decreased as the leaf development stage was delayed. However, the output and transport rates of stem sheath assimilated first increased and then decreased. From a practical perspective, field drying management should be aligned with varietal characteristics to reduce ineffective tillering, ensure sufficient dry matter accumulation during the full heading stage, and optimize post-heading dry matter export and transport. This strategy promotes the coordination between the “source” and “sink” dynamics in rice, ultimately maximizing yield in direct-seeded rice systems.

Analyzes of pan-genome and resequencing atlas unveil the genetic basis of jujube domestication

Jujube (Ziziphus jujuba Mill.), belonging to the Rhamnaceae family, is gaining increasing prominence as a perennial fruit crop with significant economic and medicinal values. Here, we conduct de novo assembly of four reference-grade genomes, encompassing one wild and three cultivated jujube accessions. We present insights into the population structure, genetic diversity, and genomic variations within a diverse collection of 1059 jujube accessions. Analyzes of the jujube pan-genome, based on our four assemblies and four previously released genomes, reveal extensive genomic variations within domestication-associated regions, potentially leading to the discovery of a candidate gene that regulates flowering and fruit ripening. By leveraging the pan-genome and a large-scale resequencing population, we identify two candidate genes involved in domestication traits, including the seed-setting rate, the bearing-shoot length and the leaf size in jujube. These genomic resources will accelerate evolutionary and functional genomics studies of jujube.

Active DNA Demethylation Mediated by OsGADD45a2 Regulates Growth, Development, and Blast (Magnaporthe oryzea) Resistance in Rice.

OsGADD45a1, a member of the growth arrest and DNA damage-inducible 45 (GADD45) family in rice, has a newly identified homologue, OsGADD45a2, which differs from OsGADD45a1 in only three amino acids. The role and function of the OsGADD45a2 in DNA demethylation are not well-understood and were investigated in this study. Osgadd45a2 mutants exhibited reduced height, shorter panicle length, fewer grains per panicle, and a lower seed setting rate compared with wild-type plants. Moreover, the results showed that OsGADD45a2 negatively regulates rice blast fungus resistance and exhibited high expression in various tissues. Using the 3000 Rice Genomes Project database, we identified four major haplotypes (each with over 100 cultivars) based on single-nucleotide polymorphisms in the coding sequence of OsGADD45a2. Among these, Hap4 was associated with a significantly greater plant height than Hap1-3, possibly due to a functional alteration of OsGADD45a2 linked to the SNP at position 2614993. In OsGADD45a2 overexpression lines, significant decreases in CG and CHG methylation levels were observed in protein-coding genes, leading to their upregulation. Overall, our findings indicate that OsGADD45a2 acts as a methylation regulator, mediating the expression of genes essential for plant growth and development and blast resistance.

OsPDIL1-5: dual role in promoting growth and development while modulating drought stress tolerance in rice (Oryza sativa L.).

Drought tolerance and plant growth are critical factors affecting rice yield, and identifying genes that can enhance these traits is essential for improving crop resilience and productivity. Using a growth-depressed and drought-tolerant (gddt) mutant of the indica rice variety Huanghuazhan (HHZ) generated by radiation mutagenesis, we discovered a novel gene, GDDT, which plays a dual role in plant biology: it acts as a positive regulator of growth and development, but as a negative regulator of drought resistance. The gddt mutant displayed a marked reduction in plant growth and seed setting rate, yet exhibited an unexpected advantage in terms of drought tolerance. Our research revealed that the enhanced drought tolerance of the gddt mutant is primarily due to a decrease in stomatal size, density, and aperture, which reduces water loss, and an activation of the reactive oxygen species (ROS) scavenging system, which helps protect the plant from oxidative stress. These physiological changes are observed both under drought conditions and in normal growth conditions. This discovery highlights the importance of GDDT as a pleiotropic gene with significant implications for both plant growth and drought resistance. Through map-based cloning, we determined that the protein disulfide isomerase-like (PDIL) gene OsPDIL1-5 is the GDDT gene. The protein encoded by this gene was localized to the endoplasmic reticulum, consistent with its predicted function. Our findings provide new insights into the role of PDIL genes in rice and suggest that further study of GDDT could lead to a better understanding of how these genes contribute to the complex interplay between plant growth, development, and stress responses. This knowledge could pave the way for the development of rice varieties that are more resilient to drought, thereby increasing crop yields and ensuring food security in water-limited environments.

Accelerated reproduction of the parental lines of white cabbage using rosette plants (steckling) and artificial climate chambers

Relevance. The technology of producing cabbage seeds with the traditional method takes almost 2 years. Its high labor intensity caused the need to search for cheaper methods of selection and seed production. One of the ways to speed up the stages of the selection process is the use of artificial climate chambers. The aim of research is to obtain seeds of promising inbred lines of late maturing white cabbage and hybrid combinations with their participation using rosette plants (steckling) in artificial climate chambers. Materials and Methods. The material was inbred pure lines of 5-6 generations of inbreeding, obtained from promising hybrid combinations of domestic and foreign breeding. The research was conducted in 2023-2024. Sowing in Plantek 64 cassettes was carried out on July 10, then the seedlings were transplanted into vegetative vessels with an optimal volume of 5-6 liters and installed in the open ground for the growth of a leaf outlet. In the phase 10-13 of real leaves, the plugs were placed in an artificial climate chamber. During the growth and development period, biometric and phenological observations were carried out, and an analysis of seed setting was carried out during the hybridization of inbred lines.Results. As a result of research in the study of hybrid seed production under artificial climate chamber conditions, high rates of seed setting in buds under cross-pollination of rosette plants of white cabbage were revealed. Genotypes with high seed set rate under geitenogamous bud pollination were also identified. The weight of 1000 seeds of the studied plants was within the range of 2.5-5.14 g. Genotypes 383-3, 384-2 and 384-7 were selected, which had the highest percentage of seeds in the fractional composition with size more than 2 mm 80.3%, 43.5% and 59.4%, respectively. When genotypes 384-2 and 384-7 were used in hybrid combinations as a maternal component, high quality indicators of the obtained seeds were revealed.Conclusion. For the studied genotypes of white cabbage, when grown in an artificial climate chamber, no significant effect on seed quality was found; the genotype had a greater effect on seed quality indicators.

Cadmium absorption and translocation in rice plants are influenced by lower air temperatures during grain filling stage

The increasing frequency and severity of low temperatures, and soil cadmium (Cd) pollution threaten food security. However, the interactive effects of Cd exposure and low temperatures on rice yield and quality, as well as the mechanisms of Cd absorption and translocation, remain unclear. In this study, two rice varieties were cultivated in soils with two Cd contamination levels (Cdhigh and Cdlow) and exposed to control (CT25) or lower temperatures of 20 °C (LT20) and 17 °C (LT17) during grain-filling stage. Results showed significant decreases in seed setting rate and grain weight, reduced head rice yield, and increased chalkiness due to low temperatures, particularly in Cdhigh soils. Compared to CT25, LT17 and LT20 increased Cd concentration by 37.6 % and accumulation by 14.8 % in grains grown in Cdhigh soils. Enhanced root activity and upregulation of OsNramp1 and OsNramp5 under both low-temperatures increased Cd levels in roots. Lower temperatures also decreased phytochelatins (PCs) and increased expression of OsHMA2 and OsCAL1, facilitating Cd transport and raising Cd levels in stems. Furthermore, upregulated OsHMA2, OsLCT1, and OsZIP7 in stems under low-temperatures promoted Cd transport to panicles. Overall, low temperatures during grain filling increased Cd uptake and translocation into rice grains, especially in high Cd contaminated soils, raising health risks. The study highlights the need to address climate change's impact on cadmium hazards in rice.

Increased sugar content impairs pollen fertility and reduces seed-setting in high-photosynthetic-efficiency rice

Crop yield depends on biomass, which is primarily associated with photosynthesis. We previously demonstrated that two photorespiratory bypasses, i.e., GOC (glycolate oxidase + oxalate oxidase + catalase) and GCGT (glycolate oxidase + catalase + glyoxylate carboligase + tartronic semialdehyde reductase), significantly increased photosynthesis, biomass, and grain yield, but decreased seed-setting rates in rice. This study explored the underlying mechanism of how elevated photosynthetic efficiency impacted the seed-setting. First, pollen germination assessed in vivo and in vitro, revealed a reduced germination rate in GCGT rice. Subsequent analysis found that photosynthates highly accumulated in the leaves and stems; sucrose and soluble sugar levels were increased but the starch level was reduced in the anthers. Uridine diphosphate glucose (UDP-Glc) was increased but uridine diphosphate galactose (UDP-Gal) was unaltered, thus causing an imbalance in the UDP-Glc/UDP-Gal ratio in GCGT anthers. Most anthers in GCGT plants had two locules in contrast to four in the wild-type (WT). Pollen tapetum was developmentally abnormal, and genes related to sucrose synthesis, transport, and tapetal programmed cell death (PCD) were upregulated, whereas those involved in starch synthesis and conversion were downregulated in GCGT anthers. Taken together, our results demonstrated that an increase in sugar content was the primary factor causing reduced seed-setting rates in high photosynthetic efficiency rice, during which metabolic disorder of sugars and UDP sugar imbalance in anthers lead to impaired pollen fertility.

Physiological and Transcriptomic Characterization of Rice Genotypes under Drought Stress

Drought is a primary abiotic stress that inhibits rice (Oryza sativa L.) growth and development, and during the reproductive stage it has a negative impact on the rice seed-setting rate. This research study examined two rice lines, La-96 (drought sensitive) and La-163 (drought resistant), for drought stress treatment (with soil moisture at 20% for 7 days) and control (normal irrigation and kept soil moisture ≥40%). To elucidate the photosynthesis and molecular mechanisms underlying drought tolerance in rice, leaf photosynthetic traits and transcriptome sequencing were used to compare differences between two contrasting recombinant inbred lines (RIL) during drought and subsequent recovery at the booting stage. The rice line La-96 showed a significant decrease in seed-setting rate after being treated for seven days’ drought stress (from 86.64% to 22.75%), while La-163 was slightly affected (from 89.04% to 79.33%). The photosynthetic activities of both lines significantly decreased under the drought treatment, and these traits of La-163 recovered to a comparable level with the control after three days of rewatering. The transcriptome of both lines in three treatments (the control, drought stress, and subsequent recovery) were tested, and a total of 16,051 genes were identified, among which 10,566 genes were differentially expressed in various treatments and rice lines. Comprehensive gene expression profiles revealed that the specifically identified DEGs were involved in the ribosome synthesis and the metabolic pathway of photosynthesis, starch, and sucrose metabolism. The DEGs that are activated and respond quickly, as seen during recovery in the tolerant rice line, may play essential roles in regulating subsequent growth and development. This study uncovered the molecular genetic pathways of drought tolerance and extended our understanding of the drought tolerance mechanisms and subsequent recovery regulation in rice.

Genome-Wide Association Study Reveals Marker–Trait Associations for Heat-Stress Tolerance in Sweet Corn

Sweet corn (Zea mays var. rugosa Bonaf.) is a crop with a high economic benefit in tropical and subtropical regions. Heat tolerance analysis and heat-tolerant gene mining are of great significance for breeding heat-resistant varieties. By combining improved genotyping using targeted sequencing (GBTS) with liquid chip (LC) technology, a high-density marker array containing 40 K multiple single polynucleotide polymorphisms (mSNPs) was used to genotype 376 sweet corn inbred lines and their heat-stress tolerance was evaluated in the spring and summer of 2019. In general, plant height, ear height and the number of lateral branches at the first level of the male flowers were reduced by 24.0%, 36.3%, and 19.8%, respectively. High temperatures in the summer accelerated the growth process of the sweet corn, shortening the days to shedding pollen by an average of 21.6% compared to the spring. A genome-wide association study (GWAS) identified 85 significant SNPs distributed on 10 chromosomes. Phenotypes in the spring and summer were associated with the 21 and 15 loci, respectively, and significant phenotypic differences between the two seasons caused by the temperature change were associated with the 49 SNP loci. The seed setting rate (SSR) was more susceptible to heat stress. An annotation analysis identified six candidate genes, which are either heat shock transcription factors (Hsfs) or heat shock proteins (Hsps) in Arabidopsis and rice (Oryza sativa), and these candidate genes were directly and indirectly involved in the heat-resistant response in the sweet corn. The current findings provide genetic resources for improving the heat-stress tolerance of sweet corn by molecular breeding.

Optimal Application of Biogas Slurry in Paddy Fields under the Dual Constraints of Agronomy and Environment in the Yangtze River Delta Region

The production of huge amounts of biogas slurry during livestock breeding has resulted in pressing environmental issues. Although paddy fields can be potential sinks for the disposal of biogas slurry, the impacts of biogas slurry on rice production, grain quality, and relevant environmental risks in the Yangtze Delta region remain unclear. Herein, we conducted a field trial from 2021 to 2023 which involved different gradients of biogas slurry utilization, including CK (no fertilizer), CN (100% chemical nitrogen (N) of 240 kg ha−1), NBS (biogas slurry replacing 50% chemical N), BS1 (replacing 100% chemical N), BS1.5 (replacing 150% chemical N), and BS2 (replacing 200% chemical N). The results showed that there were no significant differences in average rice yields between CN, NBS, BS1.5, and BS2 over the three-year study period, with an average yield of 8283 kg ha−1, and the average yields of BS1 and CK were 7815 kg ha−1 and 6236 kg ha−1, respectively. However, heavy utilization of biogas slurry (BS1.5 and BS2) not only significantly reduced the rice seed-setting rate, the 1000-grain weight, and the processing quality, but also significantly increased the protein, amylose, Cu, and Zn content in rice grains; additionally, higher N losses occurred via surface water and increased NH3 volatilization was observed, finally resulting in lower nitrogen-use efficiency. Meanwhile, moderate utilization of biogas slurry (NBS and BS1) led to better rice quality and nitrogen-use efficiency, lower potential food safety risk, and N loss. Further, compared to BS1, NBS showed higher yield, harvest index, processing quality, gel consistency, palatability scores, and nitrogen-use efficiency, but lower N losses were present. Overall, the NBS treatment balanced the agronomic benefits and environmental risks in the Yangtze River Delta region. In the future, more attention should be paid to food safety and environmental risks when using biogas slurry.

Mechanism of microbial action of the inoculated nitrogen-fixing bacterium for growth promotion and yield enhancement in rice (Oryza sativa L.)

The use of nitrogen-fixing bacteria in agriculture is increasingly recognized as a sustainable method to boost crop yields, reduce chemical fertilizer use, and improve soil health. However, the microbial mechanisms by which inoculation with nitrogen-fixing bacteria enhance rice production remain unclear. In this study, rice seedlings were inoculated with the nitrogen-fixing bacterium R3 (Herbaspirillum) at the rhizosphere during the seedling stage in a pot experiment using paddy soil. We investigated the effects of such inoculation on nutrient content in the rhizosphere soil, plant growth, and the nitrogen-fixing microbial communities within the rhizosphere and endorhizosphere. The findings showed that inoculation with the R3 strain considerably increased the amounts of nitrate nitrogen, ammonium nitrogen, and available phosphorus in the rhizosphere by 14.77%, 27.83%, and 22.67%, respectively, in comparison to the control (CK). Additionally, the theoretical yield of rice was enhanced by 8.81% due to this inoculation, primarily through a 10.24% increase in the effective number of rice panicles and a 4.14% increase in the seed setting rate. Further analysis revealed that the structure of the native nitrogen-fixing microbial communities within the rhizosphere and endorhizosphere were altered by inoculation with the R3 strain, significantly increasing the α-diversity of the communities. The relative abundance of key nitrogen-fixing genera such as Ralstonia, Azotobacter, Geobacter, Streptomyces, and Pseudomonas were increased, enhancing the quantity and community stability of the nitrogen-fixing community. Consequently, the nitrogen-fixing capacity and sustained activity of the microbial community in the rhizosphere soil were strengthened. Additionally, the expression levels of the nitrogen absorption and transport-related genes OsNRT1 and OsPTR9 in rice roots were upregulated by inoculation with the R3 strain, potentially contributing to the increased rice yield. Our study has revealed the potential microbial mechanisms through which inoculation with nitrogen-fixing bacteria enhances rice yield. This finding provides a scientific basis for subsequent agricultural practices and is of critical importance for increasing rice production and enhancing the ecosystem services of rice fields.

OsRHS Negatively Regulates Rice Heat Tolerance at the Flowering Stage by Interacting With the HSP Protein cHSP70-4.

Heat stress at the flowering stage significantly impacts rice grain yield, yet the number of identified genes associated with rice heat tolerance at this crucial stage remains limited. This study focuses on elucidating the function of the heat-induced gene reduced heat stress tolerance 1 (OsRHS). Overexpression of OsRHS leads to reduced heat tolerance, while RNAi silencing or knockout of OsRHS enhances heat tolerance without compromising yield, as assessed by the seed setting rate. OsRHS is localized in the cytoplasm and mainly expressed in the glume and anther of spikelet. Moreover, OsRHS was found to interact with the HSP protein cHSP70-4, and the knockout of cHSP70-4 resulted in increased heat tolerance. Complementation assays revealed that the knockout of cHSP70-4 could restore the compromised heat tolerance in OsRHS overexpression plants. Additional investigation reveals that elevated temperatures can amplify the bond between OsRHS and cHSP70-4 within rice. Furthermore, our findings indicate that under heat stress conditions during the flowering stage, OsRHS plays a negative regulatory role in the expression of many stress-related genes. These findings unveil the crucial involvement of OsRHS and cHSP70-4 in modulating heat tolerance in rice and identify novel target genes for enhancing heat resilience during the flowering phase in rice.

FgCWM1 modulates TaNDUFA9 to inhibit SA synthesis and reduce FHB resistance in wheat

BackgroundFusarium head blight (FHB) significantly impacts wheat yield and quality. Understanding the intricate interaction mechanisms between Fusarium graminearum (the main pathogen of FHB) and wheat is crucial for developing effective strategies to manage and this disease. Our previous studies had shown that the absence of the cell wall mannoprotein FgCWM1, located at the outermost layer of the cell wall, led to a decrease in the pathogenicity of F. graminearum and induced the accumulation of salicylic acid (SA) in wheat. Hence, we propose that FgCWM1 may play a role in interacting between F. graminearum and wheat, as its physical location facilitates interaction effects.ResultsIn this study, we have identified that the C-terminal region of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9 (NDUFA9) could interact with FgCWM1 through the yeast two-hybrid assay. The interaction was further confirmed through the combination of Co-IP and BiFC analyses. Consistently, the results of subcellular localization indicated that TaNDUFA9 was localized in the cytoplasm adjacent to the cell membrane and chloroplasts. The protein was also detected to be associated with mitochondria and positively regulated complex I activity. The loss-of-function mutant of TaNDUFA9 exhibited a delay in flowering, decreased seed setting rate, and reduced pollen fertility. However, it exhibited elevated levels of SA and increased resistance to FHB caused by F. graminearum infection. Meanwhile, inoculation with the FgCWM1 deletion mutant strain led to increased synthesis of SA in wheat.ConclusionsThese findings suggest that TaNDUFA9 inhibits SA synthesis and FHB resistance in wheat. FgCWM1 enhances this inhibition by interacting with the C-terminal region of TaNDUFA9, ultimately facilitating F. graminearum infection in wheat. This study provides new insights into the interaction mechanism between F. graminearum and wheat. TaNDUFA9 could serve as a target gene for enhancing wheat resistance to FHB.

The OsNAC41-RoLe1-OsAGAP module promotes root development and drought resistance in upland rice

Drought is a major environmental stress limiting crop yields worldwide. Upland rice (Oryza sativa) has evolved complex genetic mechanisms for adaptative growth under drought stress. However, few genetic variants that mediate drought resistance in upland rice have been identified, and little is known about the evolution of this trait during rice domestication. In this study, using a genome-wide association study we identified ROOT LENGTH 1 (RoLe1) that controls rice root length and drought resistance. We found that a G-to-T polymorphism in the RoLe1 promoter causes increased binding of the transcription factor OsNAC41 and thereby enhanced expression of RoLe1. We further showed that RoLe1 interacts with OsAGAP, an ARF-GTPase activating protein involved in auxin-dependent root development, and interferes with its function to modulate root development. Interestingly, RoLe1 could enhance crop yield by increasing the seed-setting rate under moderate drought conditions. Genomic evolutionary analysis revealed that a newly arisen favorable allelic variant, proRoLe1−526T, originated from the midwest Asia and was retained in upland rice during domestication. Collectively, our study identifies an OsNAC41-RoLe1-OsAGAP module that promotes upland rice root development and drought resistance, providing promising genetic targets for molecular breeding of drought-resistant rice varieties.

Nutrient competition between female cones and young seeds in spring affects the physiological dropping and nut-setting rate in Torreya grandis.

Physiological seed drop is a recognized phenomenon in economic forest, caused by the abscission of developing seeds due to intergroup competition for resources. However, little is known about the resource allocation dynamics in species exhibiting a biennial fruiting cycle, where interactions occur not only among seeds of the same year but also between reproductive structures from consecutive years. In this study, we explored the dynamics of resource allocation in Torreya grandis, a nut crop with a prototypical two-year seed development pattern. We implemented thinning treatments of 0%, 30%, and 60% on female cones and/or immature seeds during the spring, targeting various stages of development both pre- and post-pollination. Our findings reveal a pronounced resource competition in Torreya, evidenced by a natural seed-setting rate of merely 9.4%. Contrary to expectations, seed thinning did not lead to an obvious increase in nut-setting rates, whereas a substantial increase to 20.5% was observed when female cones were thinned by 60% at 20 days before pollination. The cone thinning treatment appears to have influenced seed development through positive cytokinin and negative abscisic acid effects. This indicates that intergroup competition between female cones and nuts is a more significant factor in seed drop than inner nut competition, and there seems to be an interaction between the two groups. We demonstrate that, in Torreya with biennial seed development, it is the competition between female cones and immature seeds that is important. This insight expands our comprehension of the physiological mechanisms governing seed drop in biennial fruiting species and managing the reproductive organ load to optimize nutrient allocation.

OsIPK1 frameshift mutations disturb phosphorus homeostasis and impair starch synthesis during grain filling in rice.

Inositol 1,3,4,5,6-pentakisphosphate 2-kinase (IPK1) catalyzes the final step in phytic acid (InsP6) synthesis. In this study, the effects of OsIPK1 mutations on InsP6 synthesis, grain filling and their underlying mechanisms were investigated. Seven gRNAs were designed to disrupt the OsIPK1 gene via CRISPR/CAS9 system. Only 4 of them generated 29 individual insertion or deletion T0 plants, in which nine biallelic or heterozygous genotypes were identified. Segregation analysis revealed that OsIPK1 frameshift mutants are homozygous lethality. The biallelic and heterozygous frameshift mutants exhibited significant reduction in yield-related traits, particularly in the seed-setting rate and yield per plant. Despite a notable decline in pollen viability, the male and female gametes had comparable transmission rates to their progenies in the mutants. A significant number of the filling-aborted (FA) grains was observed in mature grains of these heterozygous frameshift mutants. These grains exhibited a nearly complete blockage of InsP6 synthesis, resulting in a pronounced increase in Pi content. In contrast, a slight decline in InsP6 content was observed in the plump grains. During the filling stage, owing to the excessive accumulation of Pi, starch synthesis was significantly impaired, and the endosperm development-specific gene expression was nearly abolished. Consistently, the activity of whereas AGPase, a key enzyme in starch synthesis, was significantly decreased and Pi transporter gene expression was upregulated in the FA grains. Taken together, these results demonstrate that OsIPK1 frameshift mutations result in excessive Pi accumulation, decreased starch synthesis, and ultimately leading to lower yields in rice.