Seeds Of Plant Species Research Articles

Multi-taxon species richness representation within national nature reserves is associated with spatial features, human disturbance and environmental factors in mountains region

The Humboldt’s enigma has continued for many centuries, A multitude of studies have delved into various potential reasons for this richness—from topography and climate to community succession—yet a singular, all-encompassing theory for species richness across multiple taxa in mountain ecosystems remains elusive. In this research, we explored the causes of species richness in mountain multiple-taxa in terms of spatial attributes of protected areas, human disturbance and environmental factors. Initiating our study, we compiled a comprehensive database of all national nature reserves (NNRs) situated in the karst regions of Guizhou province. This was achieved through an extensive multidisciplinary field survey in recent years, resulting in a collection of 40,570 species records. Subsequently, we discerned a complex interplay between species richness, spatial attributes, human disturbance, and environmental factors, which collectively account for over 80 % of the observed variations in mountain biodiversity. Our findings revealed several intricate relationships: Shape index and fragmentation positively influenced the richness of insect, animal, and seed plant species. Conversely, anthropogenic alterations and nighttime light negatively impacted the diversity of amphibians, reptiles, and mammals. Interestingly, we discovered a significant positive association between the richness of fungi, mosses, and ferns and the variables of soil texture and soil water, demonstrating the importance of soils in karst for maintaining biodiversity. To conclude, we evaluated conservation strategies in mountainous regions. It is imperative that the spatial configuration of protected areas be refined to alleviate the detrimental effects of human disturbance. Furthermore, conservation efforts should be customized to the unique climatic and geographic conditions found locally.

Spatial mapping of key plant functional traits in terrestrial ecosystems across China

Abstract. Trait-based approaches are of increasing concern in predicting vegetation changes and linking ecosystem structures to functions at large scales. However, a critical challenge for such approaches is acquiring spatially continuous plant functional trait maps. Here, six key plant functional traits were selected as they can reflect plant resource acquisition strategies and ecosystem functions, including specific leaf area (SLA), leaf dry matter content (LDMC), leaf N concentration (LNC), leaf P concentration (LPC), leaf area (LA) and wood density (WD). A total of 34 589 in situ trait measurements of 3447 seed plant species were collected from 1430 sampling sites in China and were used to generate spatial plant functional trait maps (∼1 km), together with environmental variables and vegetation indices based on two machine learning models (random forest and boosted regression trees). To obtain the optimal estimates, a weighted average algorithm was further applied to merge the predictions of the two models to derive the final spatial plant functional trait maps. The models showed good accuracy in estimating WD, LPC and SLA, with average R2 values ranging from 0.48 to 0.68. In contrast, both the models had weak performance in estimating LDMC, with average R2 values less than 0.30. Meanwhile, LA showed considerable differences between the two models in some regions. Climatic effects were more important than those of edaphic factors in predicting the spatial distributions of plant functional traits. Estimates of plant functional traits in northeastern China and the Qinghai–Tibetan Plateau had relatively high uncertainties due to sparse samplings, implying a need for more observations in these regions in the future. Our spatial trait maps could provide critical support for trait-based vegetation models and allow exploration of the relationships between vegetation characteristics and ecosystem functions at large scales. The six plant functional trait maps for China with 1 km spatial resolution are now available at https://doi.org/10.6084/m9.figshare.22351498 (An et al., 2023).

Genome copy number predicts extreme evolutionary rate variation in plant mitochondrial DNA

Nuclear and organellar genomes can evolve at vastly different rates despite occupying the same cell. In most bilaterian animals, mitochondrial DNA (mtDNA) evolves faster than nuclear DNA, whereas this trend is generally reversed in plants. However, in some exceptional angiosperm clades, mtDNA substitution rates have increased up to 5,000-fold compared with closely related lineages. The mechanisms responsible for this acceleration are generally unknown. Because plants rely on homologous recombination to repair mtDNA damage, we hypothesized that mtDNA copy numbers may predict evolutionary rates, as lower copy numbers may provide fewer templates for such repair mechanisms. In support of this hypothesis, we found that copy number explains 47% of the variation in synonymous substitution rates of mtDNA across 60 diverse seed plant species representing ~300 million years of evolution. Copy number was also negatively correlated with mitogenome size, which may be a cause or consequence of mutation rate variation. Both relationships were unique to mtDNA and not observed in plastid DNA. These results suggest that homologous recombinational repair plays a role in driving mtDNA substitution rates in plants and may explain variation in mtDNA evolution more broadly across eukaryotes. Our findings also contribute to broader questions about the relationships between mutation rates, genome size, selection efficiency, and the drift-barrier hypothesis.

Phytodiversity is associated with habitat heterogeneity from Eurasia to the Hengduan Mountains.

The geographic distribution of plant diversity matches the gradient of habitat heterogeneity from lowlands to mountain regions. However, little is known about how much this relationship is conserved across scales. Using the World Checklist of Vascular Plants and high-resolution biodiversity maps developed by species distribution models, we investigated the associations between species richness and habitat heterogeneity at the scales of Eurasia and the Hengduan Mountains (HDM) in China. Habitat heterogeneity explains seed plant species richness across Eurasia, but the plant species richness of 41/97 HDM families is even higher than expected from fitted statistical relationships. A habitat heterogeneity index combining growing degree days, site water balance, and bedrock type performs better than heterogeneity based on single variables in explaining species richness. In the HDM, the association between heterogeneity and species richness is stronger at larger scales. Our findings suggest that high environmental heterogeneity provides suitable conditions for the diversification of lineages in the HDM. Nevertheless, habitat heterogeneity alone cannot fully explain the distribution of species richness in the HDM, especially in the western HDM, and complementary mechanisms, such as the complex geological history of the region, may have contributed to shaping this exceptional biodiversity hotspot.

Elevational patterns of seed plants and the driving mechanisms in the Himalaya.

The Himalaya is an important biodiversity hotspot on earth, which is of great significance to study the elevational gradients in plant diversity and its influencing factors for further revealing the formation of biodiversity and conservation. In this study, we measured the elevational range of 11886 seed plant species and different growth-forms (7918 herbaceous species, 2587 shrub species, and 1388 tree species) in the Himalaya. Using the optimal fitted regression models, we found that species richness and phylogenetic diversity of seed plants in the Himalaya mainly showed unimodal curves with the increases of elevation. The species richness and phylogenetic diversity of all species, trees, shrubs and herbaceous species reached the maximum value at the elevation of about 2000, 1000, 1600 and 3000 m, respectively. The results of partial regression and hierarchical partitioning analysis showed that climate and topography together drove the elevational gradient in plant diversity. Among these, mean annual temperature and annual precipitation contributed greatly to the elevational pattern, while surface area ratio and topographic heterogeneity had little influence. Compared with all species and herbaceous species, the elevational gradients of trees and shrubs plants were affected to a greater extent by the interaction between climate and topography.

Elevational shift in seed plant distributions in China's mountains over the last 70 years

AbstractAimSignificant changes in species elevational ranges in mountains have been repeatedly documented, yet the direction, magnitude and drivers of these shifts remain controversial. Presently, there is still lacking evidence about the general nature of species elevational range shifts in eastern Eurasia in response to anthropogenic climate change. By using historical specimen records and recent field observations for 735 seed plant species across 29 China's mountains, we assessed changes in species' elevational centroids and their drivers.LocationChina.Time Period1950–2018.Major Taxa StudiedSeed plant species.MethodsThe elevation records of all sampled occurrences in each mountain during the two time periods were estimated, and the null models were developed to test the sampling bias. Ecological niche models (ENMs) were used to evaluate the relative importance of climate factors in constraining each species distribution. Generalized linear models (GLMs) to test the relationships between the centroid elevational range shifts of species and different divers.ResultsWe found that 54% of the species shifting upward and 46% downhill. However, species' elevational shifts significantly differed among species and mountains. Herbaceous and lowland species moved upward faster than woody and high‐elevation species. Species in temperate mountains and in mountains with taller elevational gradients moved upward, while species in subtropical mountains and in mountains with shorter elevational gradients moved downward. Precipitation changes experienced by species, species' climatic adaptations, several species' functional traits and mountain size all contributed to explain the magnitude of species' centroid elevational range shifts.Main ConclusionsOur results highlight complex biodiversity redistribution of seed plants across Chinese mountains, not necessarily conforming to the trend of species upward shifts in elevation. Changes in precipitation regimes may blur the simplistic assumption of isotherm tracking. This study fills an important geographic shortfall for our understanding of biodiversity redistribution under anthropogenic climate change.

The Persistence of State-Listed Endangered and Threatened Seed Plants in Populated Illinois Landscapes

The state of Illinois has few natural areas remaining due to anthropogenic changes caused by agriculture, industry, and urbanization. This study investigates the seed plants at the greatest risk of extirpation from Illinois, the state-listed endangered and threatened species, and their occurrence relative to land use. The Illinois Endangered Species Protection Board and the Illinois Natural History Survey chronicle the occurrence and distribution of state-listed endangered and threatened species. We extracted the number of endangered/threatened species per county from these records. We also calculated the proportion of land cover per county for anthropogenic, non-anthropogenic, and protected areas. Using these data, we modeled the distribution of state-listed endangered and threatened seed plants as a function of land cover and human population density. Our study revealed that many endangered plant species are persisting in counties with high levels of human population density. A high degree of agricultural land cover was negatively associated with the presence of endangered/threatened seed plant species. We provide statistical evidence that endangered/threatened species are persistent in highly populated areas, given that there are protected lands with adequate habitat for them to grow. These results underscore the importance of protecting natural habitats. Urban development has preserved some of these habitats by establishing protected lands that allow the continued existence of many species. The role that protected lands play in the conservation of biodiversity is crucial to prevent extirpation of endangered/threatened seed plant species in Illinois.

What determines plant species diversity along the Modern Silk Road in the east?

As primary producers, plants provide food, oxygen, and other resources for global ecosystems, and should therefore be given priority in biodiversity protection. Most biodiversity research focuses on biodiversity hotspots, while biodiversity coldspots, such as deserts, are largely ignored. We propose that the factors shaping plant species diversity differ between biodiversity hot spots and cold spots, especially for desert ecosystems. To test this hypothesis, we investigated plant species diversity along the Modern Silk Road in the Northwest China desert, an area characterized by low precipitation, scarce vegetation, a limited number of species, and variable human activities. Surface soil was sampled from 144 plots, environmental DNA (eDNA) was extracted from soil samples, and seed plant species were identified using DNA metabarcoding technology. A total of 671 seed plant species were detected, which was more diverse than indicated by plot survey data. Plant species diversity gradually decreased from east to west along the Silk Road. In this area, temperature determines plant species diversity more than precipitation. Additionally, human activity has altered plant species diversity by introducing crops and invasive plants and eliminating environmentally adapted indigenous plants. Our results demonstrate the potential of eDNA metabarcoding technology for plant species diversity surveying. Desert plants have adapted to dry environments by relying on underground water or utilizing occasional rainfall as ephemerals, which are often not visible during surface surveys because of their short aboveground life cycle but can be detected with eDNA metabarcoding technology. Groundwater maintenance and human activity control are recommended for plant species diversity conservation and desertification control.

Arrested diversification? The phylogenetic distribution of poorly-diversifying lineages

Rapidly-diversifying lineages have been a major focus of modern evolutionary biology, with many hypotheses seeking to explain how they contribute to the uneven distribution of species in space and among taxa. However, an alternative view that is rarely explored is that some lineages evolve to become depauperate clades and show disproportionately low diversification, in a phenomenon we here call arrested diversification. In this study, we analyse several large-scale datasets including amphibian, squamate, mammal, and seed plant species to assess the extent to which poorly-diversifying lineages show distinct phylogenetic and spatial distributions in relation to other lineages. We found significant evidence that clades with low diversification rates tend to be more phylogenetically overdispersed than expected and show more idiosyncratic spatial distributions. These results suggest that arrested diversification is a real phenomenon that might play an important (yet largely overlooked) role in explaining asymmetries in the distribution of species across lineages.

Different range shifts and determinations of elevational redistributions of native and non-native plant species in Jinfo Mountain of subtropical China

Species are changing their elevational distributions in response to climate change, leading to biodiversity loss and changes in community structure. Yet whether native and non-native species have consistent elevational shifts remains to be evaluated. Subtropical mountains are rich in biodiversity, sensitive to climate change, and are experiencing high risks of biological invasion. Hence exploring the changes in species elevational distributions induced by climate change in subtropical mountains is an urgent need. Here, we explored the impact of climate change on the elevational distribution of seed plant species in Jinfo Mountain (Mt. Jinfo), a subtropical mountain in China with rich plant diversity. Notably, we compared the elevational redistributions of native and non-native plants in response to climate change. The results showed that the elevational centroids of native plant species moved downhill, while those of non-native plants shifted upward on average. The upper limit of native plants shifted downward, while the upper limit of non-native plants shifted upward on average. The elevational shifts of non-native plants were dominated by changes in the upper range limits, while those of native plants were affected by the lower limits. These opposite elevational shifts of native vs non-native species led to the increase in the elevational range size of the non-native plants, but decrease in the elevational range size of native plants, especially in high altitudes. The differences in the directions and magnitudes of elevational shifts between the native and non-native plants are mainly due to differences in their climate adaptation. Changes in temperature and precipitation influenced the elevational range shifts of native plants but not of non-native ones. This study provides a new perspective for understanding the elevational redistribution of native and non-native plant species in subtropical mountains, and suggests that climate change has stronger influence on native than non-native species.

A database of seed plants on taxonomy, geography and ecology in the Qinling-Daba Mountains and adjacent areas

The Qinling-Daba Mountains span subtropical and warm temperate zones and are one of the most remarkable biodiversity hotspots in China. Establishing a complete checklist of seed plants organized by nature reserves in the Qinling-Daba Mountains and adjacent areas is an important basis for managing and utilizing plant resources. First, we collected seed plant species data from published checklists representing 58 nature reserves in the Qinling-Daba Mountains and adjacent areas; second, we comprehensively and systematically sorted and integrated these data; third, we proofread and revised the data with the help of the R language and Flora of China dataset; and finally, we set up a seed plant database containing 96148 records, including the name, order, family, genus, life form, and endemism of each species for the entirety of the Qinling-Daba Mountains. The database contains 9491 species of seed plants belonging to 1729 genera, 211 families, and 59 orders, accounting for 39% of China’s seed plants.

Biodiversity priority areas and conservation strategies for seed plants in China.

China is known for its abundant plant resources, but biodiversity conservation faces unprecedented challenges. To provide feasible suggestions for sustainable conservation, we used the species richness algorithm and complementary algorithm to study distribution patterns of 34,082 seed plants based on 1,007,196 county-level distribution records. We reconstructed a phylogenetic tree for 95.35% of species and estimated the spatial phylogenetics, followed by correlation analyses between different distribution patterns. We identified 264 counties concentrated in southern and south-western mountainous areas as hotspots which covered 10% of the land area of China and harbored 85.22% of the Chinese seed plant species. The biodiversity conservation priorities we identified were highly representative as we have considered multiple conservation indicators. We evaluated the conservation effectiveness and gaps in the network of nature reserves and identified 31.44, 32.95, and 9.47%, respectively, of the hotspot counties as gaps in the national nature reserves, provincial nature reserves and both together, with respectively 55.77, 61.53, and 28.94% of the species. Analysis of the species composition showed there were a large number of threatened and endemic species occurring in the nature reserves’ gaps. The conservation gaps need to be filled by establishing new nature reserves or national parks, especially in south-western China, and more attentions should be paid to strengthen the conservation of specific plant taxa due to the apparent mismatches between different distribution patterns.

A new technique for stain-marking of seeds with safranine to track seed dispersal and seed bank dynamics.

Accurate tracking of seed dispersal is critical for understanding gene flow and seed bank dynamics, and for predicting population distributions and spread. Available seed-tracking techniques are limited due to environmental and safety issues or requirements for expensive and specialized equipment. Furthermore, few techniques can be applied to studies of water-dispersed seeds. Here we introduce a new seed-tracking method using safranine to stain seeds/fruits by immersing in (ex situ) or spraying with (in situ) staining solution. The hue difference value between pre- and post-stained seeds/fruits was compared using the HSV color model to assess the effect of staining. A total of 181 kinds of seeds/fruits out of 233 tested species of farmland weeds, invasive alien herbaceous plants and trees could be effectively stained magenta to red in hue (320–360°) from generally yellowish appearance (30–70°), in which the other 39 ineffectively-stained species were distinguishable by the naked eye from pre-stained seeds. The most effectively stained seeds/fruits were those with fluffy pericarps, episperm, or appendages. Safranine staining was not found to affect seed weight or germination ability regardless of whether seeds were stained ex situ or in situ. For 44 of 48 buried species, the magenta color of stained seeds clearly remained recognizable for more than 5 months after seeds were buried in soil. Tracking experiments using four species (Beckmannia syzigachne, Oryza sativa f. spontanea, Solidago Canadensis, and Acer buergerianum), representing two noxious agricultural weeds, an alien invasive plant, and a tree, respectively, showed that the safranine staining technique can be widely applied for studying plant seed dispersal. Identifying and counting the stained seeds/fruits can be executed by specially complied Python-based program, based on OpenCV library for image processing and Numpy for data handling. From the above results, we conclude that staining with safranine is a cheap, reliable, easily recognized, automatically counted, persistent, environmentally safe, and user–friendly tracking-seed method. This technique may be widely applied to staining most of the seed plant species and the study of seed dispersal in arable land and in disturbed and natural terrestrial or hydrophytic ecological systems.

Global variation in diversification rate and species richness are unlinked in plants

Species richness varies immensely around the world. Variation in the rate of diversification (speciation minus extinction) is often hypothesized to explain this pattern, while alternative explanations invoke time or ecological carrying capacities as drivers. Focusing on seed plants, the world's most important engineers of terrestrial ecosystems, we investigated the role of diversification rate as a link between the environment and global species richness patterns. Applying structural equation modeling to a comprehensive distribution dataset and phylogenetic tree covering all circa 332,000 seed plant species and 99.9% of the world's terrestrial surface (excluding Antarctica), we test five broad hypotheses postulating that diversification serves as a mechanistic link between species richness and climate, climatic stability, seasonality, environmental heterogeneity, or the distribution of biomes. Our results show that the global patterns of species richness and diversification rate are entirely independent. Diversification rates were not highest in warm and wet climates, running counter to the Metabolic Theory of Ecology, one of the dominant explanations for global gradients in species richness. Instead, diversification rates were highest in edaphically diverse, dry areas that have experienced climate change during the Neogene. Meanwhile, we confirmed climate and environmental heterogeneity as the main drivers of species richness, but these effects did not involve diversification rates as a mechanistic link, calling for alternative explanations. We conclude that high species richness is likely driven by the antiquity of wet tropical areas (supporting the "tropical conservatism hypothesis") or the high ecological carrying capacity of warm, wet, and/or environmentally heterogeneous environments.

Symbiotic bacteria of the gall-inducing mite Fragariocoptes setiger (Eriophyoidea) and phylogenomic resolution of the eriophyoid position among Acari

Eriophyoid mites represent a hyperdiverse, phytophagous lineage with an unclear phylogenetic position. These mites have succeeded in colonizing nearly every seed plant species, and this evolutionary success was in part due to the mites' ability to induce galls in plants. A gall is a unique niche that provides the inducer of this modification with vital resources. The exact mechanism of gall formation is still not understood, even as to whether it is endogenic (mites directly cause galls) or exogenic (symbiotic microorganisms are involved). Here we (i) investigate the phylogenetic affinities of eriophyoids and (ii) use comparative metagenomics to test the hypothesis that the endosymbionts of eriophyoid mites are involved in gall formation. Our phylogenomic analysis robustly inferred eriophyoids as closely related to Nematalycidae, a group of deep-soil mites belonging to Endeostigmata. Our comparative metagenomics, fluorescence in situ hybridization, and electron microscopy experiments identified two candidate endosymbiotic bacteria shared across samples, however, it is unlikely that they are gall inducers (morphotype1: novel Wolbachia, morphotype2: possibly Agrobacterium tumefaciens). We also detected an array of plant pathogens associated with galls that may be vectored by the mites, and we determined a mite pathogenic virus (Betabaculovirus) that could be tested for using in biocontrol of agricultural pest mites.

Biodiversity hotspots and conservation efficiency of a large drainage basin: Distribution patterns of species richness and conservation gaps analysis in the Yangtze River Basin, China

AbstractThe Yangtze River Basin (YRB), a key biodiversity area and a major economic zone in China, the biodiversity of the area is confronted with severe challenges. In this paper, we analyzed species distribution patterns based on a dataset with 18,538 seed plant species to identify hotspots and evaluate conservation effectiveness and gaps of the YRB. We calculated distribution patterns of species richness with the top 5% richness algorithm and complementarity algorithm, and reconstructed a phylogenetic tree and elucidated spatial phylogenetics. There were 214 hotspot grid cells covering only 6.8% of the study region, but containing 88% seed plant species. Then, we conducted correlation analysis on distribution patterns of different algorithms and species categories, which showed moderate or weak correlations between the top 5% richness algorithm and complementary algorithm. Conservation effectiveness analysis indicated there were 116 hotspot grid cells (accounting for 73.6% of the total species) protected by current conservation networks and there are many conservation gaps remaining. Finally, we used the maximum entropy model (MaxEnt) to predict suitable habitat areas of threatened species under current and future climate scenarios. Prediction analysis results indicated future expansion of suitable habitat to the southeast, and reduction in the central and western portions of the study area. When we considered anthropogenic areas, the suitable habitat was severely decreased, indicating the importance of optimizing the layout of conservation networks and comprehensive biodiversity conservation planning in the YRB.

Effect of fire factors (smoke, ash, charcoal and heat) on seeds of plant species

The effect of the main fire factors (smoke, ash, charcoal and heat) can influence the germination of species through their seeds. Hence, a methodology has been devised in order to have a common protocol for those who work in this area and serve as a valuable tool to compare different species that can be beneficial or detrimental to the conditions of a forest fire. Moreover, the methodology was completed with a check of the viability of the seeds before starting the germination process and another viability test with the non-germinated seeds (dormant or dead) after carrying out the germination test. In this way, the study of the main factors of fire, in combination with the study of the viability of the seeds, can be very useful to know the reproductive behaviour of herbaceous, shrub and tree species in a forest fire scenario. In addition, from the data obtained during the germination process of the seeds, a series of explained parameters can be obtained to better interpret the data acquired from the laboratory experiment and subsequent comparison. For all these reasons, the study of the germination of species in laboratory conditions can help us understand how they behave in the field.

Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.

Late embryogenesis abundant protein (LEA) genes are widely conserved in seed plant species and form a multigene family. While some LEAs are known to respond to environmental stresses, the function of many LEAs is unknown. OsLEA5 (Lea14A) interacts with a regulator of the endosperm storage production, FLO2, suggesting that OsLEA5 may be involved in endosperm quality control. RNAi knockdown line of OsLEA5 showed decreased seed weight. Transformant lines overexpressing OsLEA5 exhibited improved quality and seed weight of mature seeds when they were developed under high-temperature conditions, while seed quality strongly declined in wild-type plants exposed to high-temperature stress. These findings indicate that OsLEA5 contributes to suppressing the deterioration of seed quality when developed under high-temperature conditions.

The genome of Cymbidium sinense revealed the evolution of orchid traits.

SummaryThe Orchidaceae is of economic and ecological importance and constitutes ˜10% of all seed plant species. Here, we report a genome physical map for Cymbidium sinense, a well‐known species belonging to genus Cymbidium that has thousands of natural variation varieties of flower organs, flower and leaf colours and also referred as the King of Fragrance, which make it arose into a unique cultural symbol in China. The high‐quality chromosome‐scale genome assembly was 3.52 Gb in size, 29 638 protein‐coding genes were predicted, and evidence for whole‐genome duplication shared with other orchids was provided. Marked amplification of cytochrome‐ and photosystem‐related genes was observed, which was consistent with the shade tolerance and dark green leaves of C. sinense. Extensive duplication of MADS‐box genes, and the resulting subfunctional and expressional differentiation, was associated with regulation of species‐specific flower traits, including wild‐type and mutant‐type floral patterning, seasonal flowering and ecological adaption. CsSEP4 was originally found to positively regulate gynostemium development. The CsSVP genes and their interaction proteins CsAP1 and CsSOC1 were significantly expanded and involved in the regulation of low‐temperature‐dependent flowering. Important genetic clues to the colourful leaf traits, purple‐black flowers and volatile trait in C. sinense were also found. The results provide new insights into the molecular mechanisms of important phenotypic traits of Cymbidium and its evolution and serve as a powerful platform for future evolutionary studies and molecular breeding of orchids.

Root trait variation of seed plants from China and the primary drivers

AbstractAimRoot traits play important roles in plant growth and ecosystem processes. Clarifying the primary drivers of variation in root traits is indispensable for understanding and predicting ecosystem responses to environmental changes.LocationChina.TaxonSeed plant species.MethodsWe compiled six key first‐order root traits of 437 seed plant species from different biomes, phylogenetic affiliations, plant growth forms and mycorrhizal types in China. The six root traits included root diameter (RD), root tissue density (RTD), specific root length (SRL), root C content (RCC), root N content (RNC) and root C:N ratio (RCN), which are highly relevant for plant growth rate and resource acquisition. The phylogenetic linear mixed model was employed to examine the effects of climate and soil variables on root traits and to quantify the relative contributions of environment, phylogeny, plant growth form and mycorrhizal type to root trait variation.ResultsEnvironment explained most of the variations in RTD and RCC (37.4% and 24.2%, respectively). Mean precipitation of the wettest quarter and mean diurnal temperature range were the main climate drivers of RTD and RCC, respectively. Phylogeny contributed the most to the variation in RD, RNC and RCN (27.0%–52.3%). SRL showed strong links to both environment and phylogeny (35.0% and 27.8%, respectively). However, plant growth form and mycorrhizal type had little effect on root trait variation (<6.0%).Main conclusionsOur study revealed the primary drivers of variations in different root traits of seed plants in China. Climate variability and seasonality variables were more important factors driving root trait variation than the annual averages of temperature and precipitation. Incorporating the different responses of root traits to changing environments and phylogenetic affiliations observed in the present study into terrestrial ecosystem models will improve our ability to predict future vegetation distribution and ecosystem functions under global change.