Seagrass Roots Research Articles

Seagrass-mediated rhizosphere redox gradients are linked with ammonium accumulation driven by diazotrophs.

Seagrasses are important marine habitats providing several ecosystem services in coastal waters worldwide, such as enhancing marine biodiversity and mitigating climate change through efficient carbon sequestration. Notably, the fitness of seagrasses is affected by plant-microbe interactions. However, these microscale interactions are challenging to study and large knowledge gaps prevail. Our study shows that redox microgradients in the rhizosphere of seagrass select for a unique microbial community that can enhance the ammonium availability for seagrass. We provide first experimental evidence that Rhizobia, including the symbiotic N2-fixing bacteria Bradyrhizobium, can contribute to the bacterial ammonium production in the seagrass rhizosphere. The release of O2 from rhizomes and roots also caused gradients of sulfide in rhizosphere areas with enhanced nifH transcription by sulfate-reducing bacteria. O2 release from seagrass root systems thus seems crucial for ammonium production in the rhizosphere via stimulation of multiple diazotrophic associations.

Compartmentation of trace metals in Cymodocea nodosa from a heavily polluted area (Central Gulf of Gabes; Southern Mediterranean Sea): Potential use of the seagrass as environmental monitoring and bioremediation tool

This study was conducted to better understand the adaptative strategies of Cymodocea nodosa occurring in the heavily polluted environment of central Gulf of Gabes (SE Tunisia). Cd, Cu, Pb and Zn concentrations were assessed in the seagrass roots, rhizomes, and leaves, and in the surrounding seawater and sediments. Sediments were found to be the main source of contaminants bioaccumulated in C. nodosa. Bioaccumulation patterns differed significantly with metals and plant organs. While Cd, Cu and Zn were found to accumulate in leaves, Pb concentrates mainly in roots. In the heavily polluted environment of the Gulf of Gabes, C. nodosa seems to have developed two different adaptative strategies: metal trapping in roots and metal transfer from permanent (roots) to temporary (leaves) organs. These mechanisms allow the seagrass to remove the excess of metals. These properties show the potential use of C. nodosa not only as bioindicator but also as an effective bioremediation tool.

Bioaccumulation of antifouling biocides in mangroves and seagrasses in coastal ecosystems

Abstract We measured the concentrations of antifouling biocides in sediment, mangrove leaves and seagrasses from Merambong and Tinggi Island, Johor, Malaysia to evaluate their contamination levels. Although the concentrations of tributyltin (TBT) in mangrove leaves in Merambong in 2013 were significantly lower than those in 2012, the Sea-Nine 211 concentration in 2013 was significantly higher than that in 2012, suggesting that the use of antifouling biocides changed from TBT to Sea-Nine 211. The concentration of each BT (butyltin) and PT (phenyltin) in the mangrove area was significantly higher than the corresponding concentration in the seagrass area in Merambong, but the concentrations of Sea-Nine 211, diuron, chlorothalonil, Irgarol 1051 and M1 in seagrasses were significantly higher than those in mangrove leaves. There were differences in the accumulation profiles of OTs (organotins) and alternative biocides between the seagrass shoots and roots. The concentration of OTs in the seagrass roots was almost the same or higher than those in the shoots, whereas those of alternative biocides shows the opposite pattern to the OTs. Significant high relationships were observed between stable carbon isotope (δ13C) and OTs, Sea-Nine 211 and Irgarols in mangrove leaves. The concentrations of these compounds increased along with the δ13C values of the mangroves. These results suggest that mangroves take up the bicarbonate ions and nutrients in sediment and/or seawater through their roots, along with OTs, Sea-Nine 211 and Irgarols which were accumulated in sediment.

Eutrophication reduced the release of dissolved organic carbon from tropical seagrass roots through exudation and decomposition

Seagrass bed ecosystem is one of the most effective carbon capture and storage systems on earth. Seagrass roots are the key link of carbon flow between leaf-root-sediment, and the release of dissolved organic carbon (DOC) from seagrass roots through exudation and decomposition are vital sources to the sediment organic carbon (SOC) in the seagrass beds. Unfortunately, human-induced eutrophication may change the release process of DOC from seagrass roots, thereby affecting the sediment carbon storage capacity. However, little is known about the effect of nutrient enrichment on the release of DOC from seagrass roots, hindering the development of seagrass underground ecology. Therefore, we selected Thalassia hemprichii, the tropical dominant seagrass species, as the research object, and made a comparison of the release of DOC from roots through exudation and decomposition under different nitrate treatments. We found that under control, 10 μmol L−1, 20 μmol L−1 and 40 μmol L−1 nitrate treatments, soluble sugar of T. hemprichii roots were 71.37 ± 3.43 mg g−1, 67.03 ± 5.33 mg g−1, 49.14 ± 3.48 mg g−1, and 18.51 ± 2.09 mg g−1, respectively, while the corresponding root DOC exudation rates were 7.00 ± 0.97 mg g DW root−1 h−1, 5.11 ± 0.42 mg g DW root−1 h−1, 4.08 ± 0.23 mg g DW root−1 h−1, and 3.78 ± 0.74 mg g DW root−1 h−1, respectively. There was a significant positive correlation between root soluble sugar and DOC exudation rate. DOC concentration of sediment porewater and SOC content also decreased under nitrate enrichment (though not significantly), which were both significantly positively correlated with the rate of root exuded DOC. Meanwhile, nitrate enrichment also reduced the release rate of DOC from seagrass roots during initial decomposition, and the release flux of DOC from decomposition. Therefore, nutrient enrichment could decrease nonstructural carbohydrates of seagrass roots, reducing the rate of root exuded DOC, thereby lowered SOC, as well as the DOC release from seagrass root decomposition. In order to increase the release of DOC from seagrass roots and improve the carbon sequestration capacity of seagrass beds, effective measures should be taken to control the coastal nutrients input into seagrass beds.

Environmental settings of seagrass meadows control rare earth element distribution and transfer from soil to plant compartments

The role of seagrass meadows in the cycling and accumulation of rare earth elements and yttrium (REEY) is unknown. Here, we measured the concentration of REEY in the different compartments of Halodule wrightii (shoots, rhizomes, and roots) and soils in seagrass meadows near sandy beaches, mangroves, and coral reefs in the Todos os Santos Bay, Brazil. We provide data on the accumulation dynamics of REEY in seagrass compartments and demonstrate that plant compartments and soil properties determine accumulation patterns. The ∑REEY in soils were ~1.7-fold higher near coral reefs (93.0 ± 5.61 mg kg−1) than near mangrove sites (53.9 ± 31.5 mg kg−1) and were slightly higher than in sandy beaches (81.7 ± 49.1 mg kg−1). The ∑REEY in seagrasses varied between 35.4 ± 28.1 mg kg−1 near coral reefs to 59.2 ± 21.3 mg kg−1 near sandy beaches, respectively. The ∑REE bioaccumulation factor (BAF) was highest in seagrass roots near sandy beaches (BAF = 0.67 ± 0.48). All values of ∑REE translocation are <1, indicating inefficient translocation of REE from roots to rhizome to shoot. PAAS normalized REE was enriched in light REE (LREE) over heavy REE (HREE). The REEY accumulation in Halodule wrightii revealed a low potential of the seagrass to act as a sink for these elements. However, their bioavailability and potential uptake may change with soil properties. Our results serve as a basis for a better understanding of REE biogeochemical cycling and its fate in the marine environment. REE have experienced increased use as they are central to new technologies revealing an urgent need for further investigations of potential impacts on coastal ecosystems.

Gradient of microbial communities around seagrass roots was mediated by sediment grain size

AbstractAlthough research on plant rhizosphere is extensive, studies focusing on rhizoplane, rhizosphere, and outer rhizosphere of seagrass remain rare. Here, we present a detailed characterization across root‐associated microbiomes of the seagrass Enhalus acoroides at two locations (Xincun Bay and Li'an Harbor in Hainan, South China) with different sediment properties. The metabolic activity and composition of microbial communities within the rhizoplane (R), rhizosphere (SR), and outer rhizosphere (OR) compartments were compared using the Biolog‐Eco method and high‐throughput sequencing, respectively. These results showed R sediment had the highest metabolic ability in utilizing carbon substrates, followed by SR and OR in both locations, which indicated higher or more diverse carbon resources in sediment in proximity to the roots. With respect to bacterial diversity, our study showed that the OR region supported the highest biodiversity (α indices), followed by SR and R communities, which revealed the strongest selective effect of rhizoplane niche. With respect to community composition, three root‐associated communities at Xincun Bay were characterized by a decreasing trend in relative abundance of Sulfurovum and Sulfurimonas (sulfide oxidizers belonging to Episilonproteobacteria) from R to OR, which revealed their better adaption to lower oxygen concentrations and lower available carbon conditions. Vibrio and Photobacterium assigned to Gammaproteobacteria were highly enriched in rhizoplane compared with SR and OR at Li'an Harbor, which may play an important role in nutrient cycling around the seagrass roots. On the other hand, the gradient of bacterial community structure and metabolic capability created by seagrass roots was more obvious at Li'an Harbor than that at Xincun Bay, which may be related to sediment grain size.

Composition of Seagrass Root Associated Bacterial Communities Are Linked to Nutrients and Heavy Metal Concentrations in an Anthropogenically Influenced Estuary

Seagrasses are globally recognized as bioindicators of marine eutrophication and contamination. Seagrasses also harbor a distinct root microbial community that largely reflects the conditions of the surrounding environment as well as the condition of the seagrass. Hence monitoring changes in the root microbial community could act as an additional biological indicator that reflects both the seagrass health condition, as well as potential deterioration in coastal waters. We used 16S rRNA gene sequencing combined with analysis of seagrass nutrients (C, N, δ15N, δ13C) and tissue metal concentrations to investigate potential links between seagrass (Halophila ovalis) root bacteria and seagrass nutrient and metal concentrations within an anthropogenically influenced estuary. We found seagrass tissue nitrogen (%) and δ15N values were 2–5 times higher than global averages for this species. Seagrass root associated bacteria formed distinct communities that clustered by site and were correlated to both seagrass nutrient and metal concentration, with some putative sulfide oxidizing bacteria (Sulfurimonas and Sulfurovum) correlated with greater nutrient concentrations, and putative iron cycling bacteria (Lewinella and Woeseia) correlated with greater Fe and As concentrations. Our findings shed further light on the relationship between seagrass and their microbes, as well as provide additional assessment of the use of both seagrass and their microbes as indicators of estuarine and seagrass condition.

Seagrass roots strongly reduce cliff erosion rates in sandy sediments

Vegetated coastal ecosystems such as saltmarshes, mangroves and seagrass beds are increasingly promoted as sustainable storm and flood defence solutions by reducing wave energy. Yet, there is still intense debate on the ability of root mats to mitigate erosion, with some studies arguing that the direct contribution of roots in preventing sediment erosion is minor, while others consider them of major importance. Here, we hypothesized that the contrasting findings on the role of seagrass root mats in preventing erosion may stem from differences in sediment type. To test this idea, we investigated how root mats of seagrass that thrives in both sandy and muddy sediments mitigate wave-induced cliff erosion using Zostera marina in manipulative flume experiments. Results demonstrate that roots are very effective in reducing cliff erosion rates in sandy sediments. Cliff erosion rates were reduced up to 70% in sandy sediment with high seagrass root biomass. In contrast, cliff erosion rates in cohesive muddy sediments were low and unaffected by seagrass roots. This highlights the important role of seagrass roots in erosion mitigation, which has been overlooked compared to the role of canopies, which has received more attention. We suggest that management strategies should be developed to enhance the stabilization of sandy sediment, such as (1) using species with high belowground biomass, (2) using fast-growing pioneer species and (3) applying temporary stabilising measures.

Responses of Seagrass Amphibolis antarctica Roots to Nutrient Additions Along a Salinity Gradient in Shark Bay, Western Australia

Seagrass meadows in oligotrophic environments are particularly susceptible to nutrient enrichment, yet morphological and architectural seagrass root responses in these ecosystems are poorly understood. This study aimed to investigate the response of Amphibolis antarctica, one of dominant seagrass species in Shark Bay, roots to nutrient additions along a salinity gradient in the oligotrophic ecosystem of Shark Bay, Western Australia. A fully factorial nutrient additional experiment with four treatments (Control, N, P and N+P) was conducted at each of five sites along a salinity gradient (between ~38ppt in site 1 and ~50ppt in site 5) in Shark Bay across a three-year period (2012-2015). In the laboratory, the roots morphology and architecture A. antarctica were investigated using a software (WinRhizo). Then, a two-way analysis of variance (ANOVA) was performed to investigate if there was a significant change in the morphology and architecture of the roots after the nutrient inputs and along five sites with salinity gradient. There was no significant impact of nutrient addition on the root’s morphology and architecture of A. antarctica species. However, the effect of site factor with salinity gradient was significant to all morphological aspects (total root length, root surface area and root diameter) of A. antarctica roots. These findings highlight the more ecological function of A. antarctica roots being in anchoring of the plant into the seafloor rather than to absorb nutrient from the sediment.Keywords: Nutrient addition, Oligotrophic habitats, Amphibolis antarctica, Shark Bay

Terrestrial-type nitrogen-fixing symbiosis between seagrass and a marine bacterium

Symbiotic N2-fixing microorganisms have a crucial role in the assimilation of nitrogen by eukaryotes in nitrogen-limited environments1–3. Particularly among land plants, N2-fixing symbionts occur in a variety of distantly related plant lineages and often involve an intimate association between host and symbiont2,4. Descriptions of such intimate symbioses are lacking for seagrasses, which evolved around 100 million years ago from terrestrial flowering plants that migrated back to the sea5. Here we describe an N2-fixing symbiont, ‘Candidatus Celerinatantimonas neptuna’, that lives inside seagrass root tissue, where it provides ammonia and amino acids to its host in exchange for sugars. As such, this symbiosis is reminiscent of terrestrial N2-fixing plant symbioses. The symbiosis between Ca. C. neptuna and its host Posidonia oceanica enables highly productive seagrass meadows to thrive in the nitrogen-limited Mediterranean Sea. Relatives of Ca. C. neptuna occur worldwide in coastal ecosystems, in which they may form similar symbioses with other seagrasses and saltmarsh plants. Just like N2-fixing microorganisms might have aided the colonization of nitrogen-poor soils by early land plants6, the ancestors of Ca. C. neptuna and its relatives probably enabled flowering plants to invade nitrogen-poor marine habitats, where they formed extremely efficient blue carbon ecosystems7.

Resolving Chemical Gradients Around Seagrass Roots—A Review of Available Methods

Steep geochemical gradients surround roots and rhizomes of seagrass and protect the plants against the harsh conditions in anoxic sediment, while enabling nutrient uptake. Imbalance of these gradients, due to e.g., low plant performance and/or changing sediment biogeochemical conditions, can lead to plant stress and large-scale seagrass meadow die-off. Therefore, measuring and mapping the dynamic gradients around seagrass roots and rhizomes is needed to better understand plant responses to human impact and environmental changes. Historically, electrochemical microsensors enabled the first measurements of important chemical species like O2, pH or H2S with high sensitivity and spatial resolution giving important insights to the seagrass rhizosphere microenvironment; however, such measurements only provide information in one dimension at a time. In recent years, the use of reversible optical sensors (in the form of planar optodes or nanoparticles) and accumulative gel sampling methods like Diffusive Gradients in Thin films (DGT) have extended the array of analytes and allowed 2-D mapping of chemical gradients in the seagrass rhizosphere. Here, we review and discuss such microscale methods from a practical angle, discuss their application in seagrass research, and point toward novel experimental approaches to study the (bio)geochemistry around seagrass roots and rhizomes using a combination of available techniques, both in the lab andin situ.

Interspecific differences in root exudation for three tropical seagrasses and sediment pore-water dissolved organic carbon beneath them

Seagrass beds act as blue carbon sinks globally; however, little attention has been given to carbon dynamics in the seagrass rhizosphere. Hence, in this study, the quantity and characteristics of dissolved organic carbon (DOC) from root exudation of the three dominant tropical seagrasses (Thalassia hemprichii, Enhalus acoroides, and Cymodocea rotundata) and sediment pore water beneath them were compared, to examine their interspecific differences, and to establish a connection between seagrass root exudation and sediment carbon. The rate of root-exuded DOC from T. hemprichii (2.15 ± 1.06 mg g DW root-1 h-1) was significantly higher (p < 0.05) than that from E. acoroides (0.72 ± 0.39 mg g DW root-1 h-1) and C. rotundata (0.46 ± 0.25 mg g DW root-1 h-1). Root exudation rates were more affected by root hair density and root hair length than by root carbon, nitrogen, and soluble sugar content. Simultaneously, DOC concentrations of the sediment pore water beneath T. hemprichii, E. acoroides and C. rotundata were 22.05 ± 11.61 mg l-1, 15.55 ± 2. 66 mg l-1, and 14.32 ± 1.82 mg l-1, respectively. The corresponding absorption coefficients at 254 nm (a254) were 30.53 ± 18.00, 17.31 ± 2.24, and 14.07 ± 2.03, respectively, while the relevant specific ultraviolet absorbances at 254 nm (SUVA254) were 1.38 ± 0.29, 1.19 ± 0.26 and 1.03 ± 0.28, respectively. Therefore, the roots of T. hemprichii exuded DOC at a higher rate, leading to a higher pore-water DOC pool in the sediment. This suggests that T. hemprichii played a greater role in the sediment carbon pool through root exudation. Thus, it can be considered as the priority species for transplantation to promote the carbon sink function of seagrass beds.

Bioerosion and fungal colonization of the invasive foraminiferan &amp;lt;i&amp;gt;Amphistegina lobifera&amp;lt;/i&amp;gt; in a Mediterranean seagrass meadow

Abstract. Foraminiferans are diverse micro- to macroscopic protists abundant especially in (sub)tropical seas, often forming characteristic benthic communities known as “living sands”. Numerous species have migrated through the Suez Canal to the Mediterranean and one of them, i.e., Amphistegina lobifera, turned invasive, gradually outcompeting the indigenous species. At some places, A. lobifera creates thick seabed sediments, thus becoming an important environmental engineer. However, little is known about the turnover of its shells in the invaded ecosystems. Using vital staining, stereomicroscopy, scanning electron microscopy, and cultivation and DNA fingerprinting, I investigated the vital status, destruction/decomposition and mycobiota of A. lobifera in the rhizosphere of the dominant Mediterranean seagrass Posidonia oceanica in an underwater Maltese meadow (average 284 shells g−1, representing 28.5 % of dry substrate weight), in comparison with epiphytic specimens and P. oceanica roots. While 78 % of the epiphytes were alive, nearly all substrate specimens were dead. On average, 80 % of the epiphytes were intact compared to 21 % of the substrate specimens. Abiotic dissolution and mechanical damage played only a minor role, but some bioerosion was detected in 18 % and &gt;70 % of the epiphytic and substrate specimens, respectively. Few bioerosion traces could be attributed to fungi, and the majority probably belonged to photoautotrophs. The seagrass roots displayed fungal colonization typical for this species and yielded 81 identified isolates, while the surface-sterilized substrate specimens surprisingly yielded no cultivable fungi compared to 16 other identified isolates obtained from the epiphytes. While the epiphytes' mycobiota was dominated by ascomycetous generalists also known from terrestrial ecosystems (alongside with, for example, a relative of the “rock-eating” extremophiles), the roots were dominated by the seagrass-specific dark septate endophyte Posidoniomyces atricolor and additionally contained a previously unreported lulworthioid mycobiont. In conclusion, at the investigated locality, dead A. lobifera shells seem to be regularly bioeroded by endolithic non-fungal organisms, which may counterbalance their accumulation in the seabed substrate.

Cutting out the middle clam: lucinid endosymbiotic bacteria are also associated with seagrass roots worldwide.

Seagrasses and lucinid bivalves inhabit highly reduced sediments with elevated sulphide concentrations. Lucinids house symbiotic bacteria (Ca. Thiodiazotropha) capable of oxidising sediment sulphide, and their presence in sediments has been proposed to promote seagrass growth by decreasing otherwise phytotoxic sulphide levels. However, vast and productive seagrass meadows are present in ecosystems where lucinids do not occur. Hence, we hypothesised that seagrasses themselves host these sulphur-oxidising Ca. Thiodiazotropha that could aid their survival when lucinids are absent. We analysed newly generated and publicly available 16S rRNA gene sequences from seagrass roots and sediments across 14 seagrass species and 10 countries and found that persistent and colonising seagrasses across the world harbour sulphur-oxidising Ca. Thiodiazotropha, regardless of the presence of lucinids. We used fluorescence in situ hybridisation to visually confirm the presence of Ca. Thiodiazotropha on roots of Halophila ovalis, a colonising seagrass species with wide geographical, water depth range, and sedimentary sulphide concentrations. We provide the first evidence that Ca. Thiodiazotropha are commonly present on seagrass roots, providing another mechanism for seagrasses to alleviate sulphide stress globally.

Overgrazing of Seagrass by Sea Urchins Diminishes Blue Carbon Stocks

Seagrasses are among the Earth’s most efficient ecosystems for sequestering carbon, but are also in global decline, risking carbon they have accumulated over geological timescales. One contributor to this global decline is seagrass overgrazing by sea urchins; however, it is unknown how this may affect stocks of “blue carbon” by damaging the seagrass root systems that stabilise the carbon-rich sediments of seagrass meadows. To fill this knowledge gap, we used aerial and sonar mapping plus soil carbon measures to investigate a seagrass urchin overgrazing event in Southeast Australia and quantified the concomitant impacts on blue carbon stocks. We found that seagrass loss significantly diminished local organic carbon stocks. The decline was also rapid: areas grazed within the preceding 6 months showed a 35% loss of blue carbon, which continued even after urchins had left the area (46% loss after 3 years). High-resolution 3D sonar reconstructions revealed that urchin overgrazing of seagrass caused erosion of the top 30 ± 20 cm of sediment within the 26,892 m2 barren: the equivalent of 8100 ± 5400 m3 of sediment. To calculate the additional CO2 emissions from this erosion, we assumed between 50 and 90% of the seagrass carbon stock (11.7 ± 1.24 t Corg ha−1 in the top 10 cm) would be remineralised, resulting in the release of between 57.8 and 104 tonnes of CO2 equivalents due to sea urchin overgrazing-induced erosion. This study adds to a growing body of evidence that seagrass loss leads to erosion and concomitant loss of blue carbon stocks.

Root microbiomes as indicators of seagrass health.

The development of early warning indicators that identify ecosystem stress is a priority for improving ecosystem management. As microbial communities respond rapidly to environmental disturbance, monitoring their composition could prove one such early indicator of environmental stress. We combined 16S rRNA gene sequencing of the seagrass root microbiome of Halophila ovalis with seagrass health metrics (biomass, productivity and Fsulphide) to develop microbial indicators for seagrass condition across the Swan-Canning Estuary and the Leschenault Estuary (south-west Western Australia); the former had experienced an unseasonal rainfall event leading to declines in seagrass health. Microbial indicators detected sites of potential stress that other seagrass health metrics failed to detect. Genera that were more abundant in 'healthy' seagrasses included putative methylotrophic bacteria (e.g. Methylotenera and Methylophaga), iron cycling bacteria (e.g. Deferrisoma and Geothermobacter) and N2 fixing bacteria (e.g. Rhizobium). Conversely, genera that were more abundant in 'stressed' seagrasses were dominated by putative sulphur-cycling bacteria, both sulphide-oxidising (e.g. Candidatus Thiodiazotropha and Candidatus Electrothrix) and sulphate-reducing (e.g. SEEP-SRB1, Desulfomonile and Desulfonema). The sensitivity of the microbial indicators developed here highlights their potential to be further developed for use in adaptive seagrass management, and emphasises their capacity to be effective early warning indicators of stress.

Long-term decomposition captures key steps in microbial breakdown of seagrass litter

Seagrass biomass represents an important source of organic carbon that can contribute to long-term sediment carbon stocks in coastal ecosystems. There is little empirical data on the long-term microbial decomposition of seagrass detritus, despite this process being one of the key drivers of carbon-cycling in coastal ecosystems, that is, it influences the amount and quality of carbon available for sequestration. Here, our goal was to investigate how litter quality (leaf vs. rhizome/root) and the microbial communities involved in organic matter remineralisation shift over a 2-year field decomposition study north of Sydney, Australia using the temperate seagrass Zostera muelleri. The sites varied in bulk sediment characteristics and the sediment-associated microbial communities, but these variables overall had little influence on long-term seagrass decomposition rates or seagrass-associated microbiomes. The results showed a clear succession of bacterial and archaeal communities for both tissues types from r-strategists such as α- and γ-proteobacteria to K-strategies, including δ-proteobacteria, Bacteroidia and Spirochaetes. We used a new mathematical model to capture how decay rates varied over time and found that two decomposition events occurred for some seagrass leaf samples, possibly due to exudate input from living seagrass roots growing into the litter bag. The new model also indicated that conventional single exponential models overestimate long-term decay rates, and we detected for the first time the refractory, or stable, phase of decomposition for rhizome/root biomass. The stable phase began at approximately 20% mass remaining and after 600 days, and the persistence of rhizome/root biomass was attributed to the anoxic conditions and the preservation of refractory organic matter. While we predict that rhizome/root biomass will contribute more to the long-term sediment carbon stocks, the preservation of leaf carbon may be enhanced at locations were sedimentation is high and burial in anoxic conditions is rapid and constant.

The rhizosphere of aquatic plants is a habitat for cable bacteria.

ABSTRACTCable bacteria belonging to the family Desulfobulbaceae couple sulfide oxidation and oxygen reduction by long-distance electron transfer over centimeter distances in marine and freshwater sediments. In such habitats, aquatic plants can release oxygen into the rhizosphere. Hence, the rhizosphere constitutes an ideal habitat for cable bacteria, which have been reported on seagrass roots recently. Here, we employ experimental approaches to investigate activity, abundance, and spatial orientation of cable bacteria next to the roots of the freshwater plant Littorella uniflora. Fluorescence in situ hybridization (FISH), in combination with oxygen-sensitive planar optodes, demonstrated that cable bacteria densities are enriched at the oxic–anoxic transition zone next to roots compared to the bulk sediment in the same depth. Scanning electron microscopy showed cable bacteria along root hairs. Electric potential measurements showed a lateral electric field over centimeters from the roots, indicating cable bacteria activity. In addition, FISH revealed that cable bacteria were present in the rhizosphere of Oryza sativa (rice), Lobelia cardinalis and Salicornia europaea. Hence, the interaction of cable bacteria with aquatic plants of different growth forms and habitats indicates that the plant root–cable bacteria interaction might be a common property of aquatic plant rhizospheres.

Oxygen loss from seagrass roots coincides with colonisation of sulphide-oxidising cable bacteria and reduces sulphide stress.

Seagrasses thrive in anoxic sediments where sulphide can accumulate to phytotoxic levels. So how do seagrasses persist in this environment? Here, we propose that radial oxygen loss (ROL) from actively growing root tips protects seagrasses from sulphide intrusion not only by abiotically oxidising sulphides in the rhizosphere of young roots, but also by influencing the abundance and spatial distribution of sulphate-reducing and sulphide-oxidising bacteria. We used a novel multifaceted approach combining imaging techniques (confocal fluorescence in situ hybridisation, oxygen planar optodes, and sulphide diffusive gradients in thin films) with microbial community profiling to build a complete picture of the microenvironment of growing roots of the seagrasses Halophila ovalis and Zostera muelleri. ROL was restricted to young root tips, indicating that seagrasses will have limited ability to influence sulphide oxidation in bulk sediments. On the microscale, however, ROL corresponded with decreased abundance of potential sulphate-reducing bacteria and decreased sulphide concentrations in the rhizosphere surrounding young roots. Furthermore, roots leaking oxygen had a higher abundance of sulphide-oxidising cable bacteria; which is the first direct observation of these bacteria on seagrass roots. Thus, ROL may enhance both abiotic and bacterial sulphide oxidation and restrict bacterial sulphide production around vulnerable roots, thereby helping seagrasses to colonise sulphide-rich anoxic sediments.

Effects of Zostera marina rhizosphere and leaf detritus on the concentration and distribution of pore-water sulfide in marine sediments

The relationship between seagrasses and pore-water hydrogen sulfide in the sediment is complex due to the opposing effects of the seagrass root system, which can reduce sulfide concentration by promoting its oxidation to sulfate, and the burial of organic matter from the plant itself, which can increase sulfide concentration by stimulating anaerobic sulfate reduction. Here, field samples of pore-water sulfide were collected in areas with and without Zostera marina shoots using Diffusive Gradients in Thin-Films (DGTs) to obtain two-dimensional visualizations of sulfide concentrations within the sediment in relation to location of eelgrass detritus and the rhizosphere. To decouple the effects of leaf detritus and the eelgrass rhizosphere on sulfide, manipulative laboratory studies were conducted over 4 weeks using 10 aquaria with or without eelgrass and different quantities of eelgrass detritus planted at 4 cm and 11 cm depths. Spatial distribution of pore-water sulfide was again measured via DGT. We found high spatial variation in pore-water sulfide concentration depending on the location analyzed relative to the rhizosphere or detritus. In the field study, pore-water sulfide concentration was greater in samples with eelgrass present, and the presence of leaf detritus accounted for higher than average sulfide concentrations in the sediment. In the laboratory experiment, sulfide concentrations localized around the leaf detritus increased with higher mass of added detritus, and sediment within the rhizosphere exhibited reduced sulfide concentrations. These results suggest that on the large scale the presence of eelgrass increases sulfide concentration, but on the smaller scale the pattern varies, with higher concentrations near buried detritus and lower concentrations near root tips.