Sea Urchin Research Articles

Stable germline transgenesis using the Minos Tc1/mariner element in the sea urchin, Lytechinus pictus.

Stable transgenesis is a transformative tool in model organism biology. While the sea urchin is one of the oldest animal models in cell and developmental biology, studies in this animal have largely relied on transient manipulation of wild animals, without a strategy for stable transgenesis. Here we build on recent progress to develop a more genetically tractable sea urchin species, Lytechinus pictus and establish a robust transgene integration method. Three commonly used transposons (Minos, Tol2, piggyBac) were tested for non-autonomous transposition, using plasmids containing a polyubiquitin promoter upstream of a H2B-mCerulean nuclear marker. Minos was the only transposable element that resulted in significant expression past metamorphosis. F0 animals were raised to sexual maturity and spawned to determine germline integration, transgene inheritance frequency, and to characterize expression patterns of the transgene in F1 progeny. The results demonstrated transgene transmission through the germline, the first example of a germline transgenic sea urchin, and indeed of any echinoderm. This milestone paves the way for the generation of diverse transgenic resources that will dramatically enhance the utility, reproducibility, and efficiency of sea urchin research.

Trace metals pollution and trophic position of three sea urchin species in the Gulf of California.

Sea urchin species are ecologically important in the Gulf of California and are becoming popular as a local fishery due to their commercial value. The most abundant species are Echinometra vanbrunti, Eucidaris thouarsii, and Tripneustes depressus. The objective of this study was to evaluate cadmium, lead, copper, zinc, and iron concentrations, as well as stable isotope values in these sea urchin species in the Santa Rosalia mining area (STR), in three sites: Punta Gorda, Punta el Aterrizaje, and Punta Salina. The highest Fe concentration (100.2 mg kg-1) was found in E. vanbrunti, while the highest concentrations of Pb (15.1 mg kg-1), Cu (14.5 mg kg-1), and Zn (347.7 mg kg-1) were recorded in E. thouarsii, and the highest Cd concentration (10.8 mg kg-1) was found in T. depressus. The main health risk of trace metal pollution in STR may be caused by Cd and Pb. δ15N and δ13C values were higher in E. thouarsii and T. depressus, respectively; E. thouarsii has the highest trophic position. Specimen size was not related to metal concentrations, but a positive relationship was observed between specimen size and isotopic values in T. depressus. The three species showed different bioaccumulation patterns for the metals analyzed. Additionally, collection sites and seasons play an important role in the variability of metal concentration.

Molecular cloning and functional study of a Rel homologous gene in sea urchin Strongylocentrotus intermedius

NF-κB (Nuclear factor-kappa B) family proteins are versatile transcription factors that play crucial regulatory roles in cell development, growth, apoptosis, inflammation, and immune response. However, there is limited research on the function of these key genes in echinoderms. In this study, an NF-κB family gene (SiRel) was identified in sea urchin Strongylocentrotus intermedius. The gene has an open reading frame length of 1809 bp and encodes for 602 amino acids. Domain prediction results revealed that the N-terminal of SiRel protein encodes a conserved Rel homology domain (RHD), including the RHD-DNA binding domain and the RHD-dimerization domain. Multiple sequence comparison results showed that the protein sequences of these two domains were conserved. Phylogenetic analysis indicated that SiRel clustered with Strongylocentrotus purpuratus p65 protein and Rel protein of other echinoderms. Results from quantitative real-time PCR demonstrated detectable SiRel mRNA expression in all tested sea urchin tissues, with the highest expression level found in the gills. And SiRel mRNA expression levels were significantly induced after LPS (Lipopolysaccharide) and poly(I:C) (Polyinosinic:polycytidylic acid) stimulation. In addition, SiRel protein expression can be found in cytoplasm and nucleus of HEK293T cells. Co-immunoprecipitation results showed that SiRel could interact with sea urchin IκB (Inhibitor of NF-κB) protein. Western blotting and dual-luciferase reporter gene assay results indicated that overexpression of SiRel in HEK293T cells could impact the phosphorylation levels of JNK (c-Jun N-terminal kinase) and Erk1/2 (Extracellular signal-regulated kinases1/2) and activate interleukin-6 (IL-6), activating protein 1 (AP-1), interferon (IFN)α/β/γ, and signal transducer and activator of transcription 3 (STAT3) reporter genes in HEK293T cells. In conclusion, this study reveals that SiRel plays an important role in the innate immune response of sea urchins and enriches our understanding of comparative immunology theory.

Deposition of Gadolinium in the Central and Peripheral Nervous Systems and Its Effects on Sensory, Cognitive, and Athletic Implications after Multiple Injections of Gadolinium-Based Contrast Agents in Rats.

After repeat administration of gadolinium-based contrast agents (GBCAs), the association between gadolinium retention in the central and peripheral nervous systems and the main manifestations of myelopathy and progressive neurologic symptoms remains unclear. We investigated the effects of the repeat administration of GBCAs on gadolinium retention in the central and peripheral nervous systems and the sensory, cognitive, and athletic implications. Forty-eight male Wistar rats (6 weeks of age) were randomly divided into 4 experimental groups (12 rats in each group): the gadodiamide group (linear and nonionic GBCAs), the gadopentetate dimeglumine group (linear and ionic GBCAs), the gadoterate meglumine group (macrocyclic and ionic GBCAs), and the control group (0.9% saline solution). The brains of the rats were scanned using 9.4T MRI. Sensory behavioral tests were performed to assess the effect of GBCAs on pain sensitivity function. Gadolinium deposition in the brain, spinal cord, and peripheral nerves was determined by inductively coupled plasma mass-spectrometry. Transmission electron microscopy was used to observe the microscopic distribution of gadolinium after deposition in the spinal cord. The histopathologic features in the spinal cord were analyzed by H&E staining, Nissl staining, glial fibrillary acidic protein staining, and neuron-specific enolase staining after administration of GBCAs. All GBCAs resulted in gadolinium deposition in the central and peripheral nerve tissues, with the highest deposition in the sciatic nerve tissue (mean, 62.86 [SD, 12.56] nmol/g). Decreased muscle power, impairment of spatial cognitive function power, and pain hypersensitivity to thermal and mechanical stimuli were observed after exposure to gadodiamide. At the spinal cord, transmission electron microscopy found that the region of gadolinium depositions had a spheric structure similar to "sea urchins" and was mainly located near the vascular basement membrane. Multiple injections of GBCAs caused gadolinium deposition in the brain, spinal cord, and peripheral nerves, especially in the spinal cords of the gadodiamide group. Gadodiamide led to pain hypersensitivity and decreased muscle power and cognitive ability. For the patients who are hypersensitive to pain and need multiple MRI examinations, we recommend using macrocyclic GBCAs and the lowest dose possible.

From Individual Calcifiers to Ecosystem Dynamics: Ocean Acidification Effects on Urchins and Abalone.

A central question in ecology is: to what extent do trophic interactions govern the structure and function of communities? This question is becoming more pressing as trophic interactions shift with rapid climate change. Sea urchins and abalone are key invertebrates in the habitats in which they reside. Sea urchins are critical members of exemplar trophic cascades in kelp forests due to their impact on kelp establishment and maintenance; yet their populations are controlled by predators, such as sea otters and sunflower sea stars. Abalone compete with urchins for macroalgal food resources and therefore can help regulate urchin populations in kelp forests. Given that both urchin tests and abalone shells used for predator defense are comprised of calcium carbonate, much research has been conducted on the impacts of ocean acidification (OA) on these calcified structures. A growing body of literature has shown that urchin tests are less calcified and break with less force under OA conditions. Less is known about abalone, but their shells also appear to respond negatively to OA. Using kelp forest communities as exemplar ecosystems, we discuss the morphological, biomechanical, and physiological responses to OA in urchins and abalone and consider how these individual level responses scale to trophic interactions and ultimately whole ecosystem processes. Although the impacts of OA on the calcified structures used for defense have been well studied, calcified mechanisms for food consumption, such as the Aristotle's lantern of urchins, are much less understood. Thus, examining both the feeding and defense sides of trophic interactions would greatly improve our understanding of OA responses across individual to ecosystem level scales. More generally, measurements of morphological, biomechanical, and physiological responses to OA can be made in individuals to help predict higher level ecological responses, which would greatly contribute to broader predictions of whole ecosystem responses to OA.

Fabrication of sea urchin shaped polyaniline-modified magnetic microporous organic network for efficient extraction of non-steroidal anti-inflammatory drugs from animal-derived food samples

In this work, a novel polyaniline-modified magnetic microporous organic network (MMON-PANI) composite was fabricated for effective magnetic solid phase extraction (MSPE) of five typical nonsteroidal anti-inflammatory drugs (NSAIDs) from animal-derived food samples before high performance liquid chromatography (HPLC) detection. The core-shell sea urchin shaped MMON-PANI integrates the merits of Fe3O4, MON, and PANI, exhibiting large specific surface area, rapid magnetic responsiveness, good stability, and multiple binding sites to NSAIDs. Convenient and effective extraction of trace NSAIDs from chicken, beef and pork samples is realized on MMON-PANI via the synergetic π-π, hydrogen bonding, hydrophobic, and electrostatic interactions. Under optimal conditions, the MMON-PANI-MSPE-HPLC-UV method exhibits wide linear ranges (0.2–1000 μg L−1), low limits of detection (0.07–1.7 μg L−1), good precisions (intraday and inter-day RSDs < 5.4 %, n = 3), large enrichment factors (98.6–99.9), and less adsorbent consumption (3 mg). The extraction mechanism and selectivity of MMON-PANI are also evaluated in detail. This work proves the incorporation of PANI onto MMON is an efficient way to promote NSAIDs enrichment and provides a new strategy to synthesize multifunctional MON-based composites in sample pretreatment.

Phylogeny and genetic diversity of Echinometra sea urchin in Taiwan

ABSTRACT Four closely related Echinometra species exist in the Indo-Pacific region, but little is known about their population genetics in Taiwan, an area rich in marine biodiversity. Echinometra dominates the Douziping coral reef off Liuqiu Island, where urchin barrens are also present. To understand the relationship between Echinometra species and urchin barrens, we investigated the genetic diversity of Echinometra species in Taiwan by using a nondestructive DNA extraction method on the spines of sea urchins. Mitochondrial DNA results showed that E. sp. C is the dominant species in Taiwan, with relatively high interspecific genetic distance. The E. sp. C is the only species in Douziping, and its population is expanding in accordance with the significantly low R2 value, the significantly negative Fu’s Fs values, and mismatch distribution analysis results. Gene flow estimates between the urchin populations in Taiwan and those in the neighbouring waters of Okinawa suggested that the Kuroshio Current could play an important role in Echinometra dispersal. This implies strongly connectivity between these populations. This study reports the first case of E. sp. C-associated urchin barrens in the tropics.

Phylogeny and genetic diversity of Echinometra sea urchin in Taiwan

ABSTRACT Four closely related Echinometra species exist in the Indo-Pacific region, but little is known about their population genetics in Taiwan, an area rich in marine biodiversity. Echinometra dominates the Douziping coral reef off Liuqiu Island, where urchin barrens are also present. To understand the relationship between Echinometra species and urchin barrens, we investigated the genetic diversity of Echinometra species in Taiwan by using a nondestructive DNA extraction method on the spines of sea urchins. Mitochondrial DNA results showed that E. sp. C is the dominant species in Taiwan, with relatively high interspecific genetic distance. The E. sp. C is the only species in Douziping, and its population is expanding in accordance with the significantly low R2 value, the significantly negative Fu’s Fs values, and mismatch distribution analysis results. Gene flow estimates between the urchin populations in Taiwan and those in the neighbouring waters of Okinawa suggested that the Kuroshio Current could play an important role in Echinometra dispersal. This implies strongly connectivity between these populations. This study reports the first case of E. sp. C-associated urchin barrens in the tropics.

Fabrication of sea urchin shaped polyaniline-modified magnetic microporous organic network for efficient extraction of non-steroidal anti-inflammatory drugs from animal-derived food samples

In this work, a novel polyaniline-modified magnetic microporous organic network (MMON-PANI) composite was fabricated for effective magnetic solid phase extraction (MSPE) of five typical nonsteroidal anti-inflammatory drugs (NSAIDs) from animal-derived food samples before high performance liquid chromatography (HPLC) detection. The core-shell sea urchin shaped MMON-PANI integrates the merits of Fe3O4, MON, and PANI, exhibiting large specific surface area, rapid magnetic responsiveness, good stability, and multiple binding sites to NSAIDs. Convenient and effective extraction of trace NSAIDs from chicken, beef and pork samples is realized on MMON-PANI via the synergetic π-π, hydrogen bonding, hydrophobic, and electrostatic interactions. Under optimal conditions, the MMON-PANI-MSPE-HPLC-UV method exhibits wide linear ranges (0.2–1000 μg L−1), low limits of detection (0.07–1.7 μg L−1), good precisions (intraday and inter-day RSDs < 5.4 %, n = 3), large enrichment factors (98.6–99.9), and less adsorbent consumption (3 mg). The extraction mechanism and selectivity of MMON-PANI are also evaluated in detail. This work proves the incorporation of PANI onto MMON is an efficient way to promote NSAIDs enrichment and provides a new strategy to synthesize multifunctional MON-based composites in sample pretreatment.

Morphological and Mechanical Tube Feet Plasticity among Populations of Sea Urchin (Strongylocentrotus purpuratus)

Abstract Sea urchins rely on an adhesive secreted by their tube feet to cope with the hydrodynamic forces of dislodgement common in nearshore, high wave-energy environments. Tube feet adhere strongly to the substrate and detach voluntarily for locomotion. In the purple sea urchin, Strongylocentrotus purpuratus, adhesive performance depends on both the type of substrate and the population of origin, where some substrates and populations are more adhesive than others. To explore the source of this variation, we evaluated tube foot morphology (disc surface area) and mechanical properties (maximum disc tenacity and stem breaking force) of populations native to substrates with different lithologies: sandstone, mudstone, and granite. We found differences among populations, where sea urchins native to mudstone substrates had higher disc surface area and maximum disc tenacity than sea urchins native to sandstone substrate. In a lab-based reciprocal transplant experiment, we attempted to induce a plastic response in tube foot morphology. We placed sea urchins on non-native substrates (i.e., mudstone sea urchins were placed on sandstone and vice versa), while keeping a subgroup of both populations on their original substrates as a control. Instead of a reciprocal morphological response, we found that all treatments, including the control, reduced their disc area in laboratory conditions. The results of this study show differences in morphology and mechanical properties among populations, which explains population differences in adhesive performance. Additionally, this work highlights the importance of considering the impact of phenotypic plasticity in response to captivity when interpreting the results of laboratory studies.

A sustainable no-kill sea urchin aquaculture method to obtain caviar

A sustainable no-kill sea urchin aquaculture method to obtain caviar

Damage assessment on the discarded macro-benthic fauna in the Italian striped venus clam (Chamelea gallina) fisheries

The striped venus clam fishery in Italy is carried out by means of hydraulic dredges and it is one of the most important socio- economic activities in the Italian fisheries sector. Dredging has traditionally been considered among fishing activities with the greatest impact at the ecosystem level. Here, therefore, we investigated the disturbance level exerted by dredging on the studied area. Also, damage and mortality rates exerted by dredging on the discarded macro-benthic fauna living associated with Chamelea gallina during the summer season were investigated using a four-level damage scale, given three different haul time duration (3, 6 and 9 minutes). Despite the fact that macro-benthic fauna represented on average only 4.4% of the total catch, the most represented taxa in terms of both abundance and number were Malacostraca, Bivalvia, and Echinoidea. The analysis of the macro-benthic communities’ structure between hauls revealed that the species composition was very similar, and ABC plots together with the Warwick Statistics (W) revealed a moderately disturbed macro-benthic community. No significant difference was found in damage and mortality rates between hauls duration when stratified at taxon or species level. Overall, 61.0% of individuals of the catch were undamaged, whereas 16.1%, 3.7%, and 19.2% displayed slight, intermediate, and severe damage, respectively. We found that soft-shelled or soft-bodied species were the most affected by the harvesting process, whereas thick-shelled or thick-bodied species suffered the slightest damage. In particular, the species suffering major (severe) damage were the sea urchin Echinocardium cordatum (84.6%), the bivalves Mactra stultorum and Polititapes aureus (32.5% and 20.0%, respectively), the crab Liocarcinus vernalis (4.0%), and the sea star Astropecten irregularis (4.8%). The overall mortality rate of all discarded individuals was 22.9%, with E. cordatum showing the highest mortality rate of 96.0%. These findings highlight the importance of guaranteeing the integrity of the entire ecosystem through the adoption of suitable management plans and actions.

A sustainable no-kill sea urchin aquaculture method to obtain caviar

A sustainable no-kill sea urchin aquaculture method to obtain caviar

Sea urchin inspired ultrafast response low humidity sensor based on ionic liquid modified UiO-66 with advanced applications

Numerous applications require low humidity sensors that not only sensitive but also stable, small hysteresis, high resolution and fast response. However, most reported low humidity sensors cannot possess these properties at the same time. In this work, inspired by sea urchin, we developed an ionic liquid (IL) modified metal organic framework (UiO-66) based low humidity sensor. Owing to the synergistic effect of the hydrophilicity and ionic conductivity of IL and the steric hindrance effects of UiO-66, the optimized low humidity sensor simultaneously exhibits high response (47.5), small hysteresis (0.3 % RH), ultrafast response speed (0.2 s), high resolution (1 % RH), and excellent long-term stability (>120 days). In particular, the sensor has been proved to have potential applications in visual humidity detection and water source location. This work provides a preliminary design principle that will contribute to the preparation of high-performance low humidity sensing materials.

Heterosis of the interspecific sea urchin hybrids between Strongylocentrotus intermedius and Heliocidaris crassispina

In order to study the heterosis of the interspecific hybrids between sea urchin Strongylocentrotus intermedius and Heliocidaris crassispina, comparative culturing experiments were conducted on individuals of the same age from four groups: S. intermedius (SI), H. crassispina (HC), S. intermedius ♀ × H. crassispina ♂ (SH), and H. crassispina ♀ × S. intermedius ♂ (HS). Growth rate at different stages of development, gonadal production and quality, high-temperature tolerance, and resistance to black-mouth disease were compared among these four species. The results were as follows: in the juvenile sea urchin stage, SH sea urchins exhibited 79.11% and 55.28% body weight heterosis at 16 and 20 °C, respectively, with particularly high single-parent heterosis observed at 16 °C compared to the male parent HC (247.79%). In the young sea urchin stage, SH sea urchins displayed mid-parent heterosis in body weight at all temperatures except 28 °C, reaching a maximum of 94.62% at 12 °C. HS Sea urchins showed mid-parent heterosis only at 12, 24, and 28 °C, with the highest observed at 28 °C (36.51%). The body weight specific growth rate of SH sea urchins was significantly higher than those of the other three species (P < 0.05), and they achieved the largest body weight (48.43 g) by the end of the experiment. The gonad wet weight of SH sea urchins was significantly higher than those of the other three species (P < 0.05). While there was no difference in gonad index between SH and SI sea urchins, it was significantly higher than those of HC and HS sea urchins. In terms of high-temperature tolerance, the upper thermal tolerances (UTT) of HC and HS sea urchins were significantly higher than those of SI and SH sea urchins (P < 0.05). Regarding resistance to black-mouth disease, there was no statistically significant difference in survival rates between SH sea urchins and SI sea urchins after infection with Vibrio echinoideorum at a concentration of 1 cfu/mL. However, the survival rate of HS sea urchins was significantly higher than that of SI. The study demonstrated that the SH hybrid sea urchins exhibit notable advantages in growth and gonad yield compared to its parental species, suggesting its potential as a valuable candidate for the cultivation of new sea urchin varieties in aquaculture. These findings hold significant promise for enhancing the efficiency and sustainability of sea urchin farming practices.

The evolutionary modifications of a GoLoco motif in the AGS protein facilitate micromere formation in the sea urchin embryo.

Evolutionary modifications of GoLoco motifs are critical for AGS function in micromere formation in the sea urchin embryo. The chimeric AGS, which contains the C-terminus of AGS orthologs from various organisms, suggests that human LGN, pencil urchin AGS, and Drosophila Pins compensate for the activity of sea urchin AGS. Sea urchin AGS regulates the localization of the conserved asymmetric cell division (ACD) machinery members at the vegetal cortex.SpAGS is a variable factor facilitating ACD diversity during species diversification.

Community Structure of Sea Urchins (Echinoidea) in the Intertidal Zone of Thomas Beach, Uluwatu

Thomas Beach, located in Uluwatu, Province of Bali, is a rocky shore inhabited by sea urchins. The research aims to discover the habitat characteristics and community structure of sea urchins (Echinoidea) in the intertidal zone of Thomas Beach. Data collection was conducted from April to May 2023 during the lowest tide. A quantitative method with modified line transects was used for data collection. Data collected included the number and species of sea urchins, water quality parameters (temperature, salinity, pH, dissolved oxygen, water clarity, and depth), and substrate types. Data were analyzed using Microsoft Excel, including individual density, diversity index, uniformity index, and dominance index. The research findings revealed five species of sea urchins: Echinotrix calamaris, Echinometra oblonga, Echinometra mathaei, Tripneustes gratilla, and Stomopneustes variolaris. The highest density of sea urchins was found in E. oblonga (16.91 ind/m2). The diversity index values ranged from 0.4936 to 0.8721, indicating a low level of diversity. The uniformity index values ranged from 0.4493 to 0.784, suggesting the community is relatively unstable. The dominance index values ranged from 0.5036 to 0.7166, indicating a moderate level of dominance. The aquatic habitat characteristics, based on the research findings, it was determined that a temperature of 30℃, salinity ranging from 31.77 to 32.76, pH of 8, dissolved oxygen (DO) of 5 mg/l, water clarity of 100%, and a depth ranging from 8.4 to 33.93 cm. The substrate type was rocky at station 1, sandy with seagrass at station 2, and rocky sandy at station 3.

Catalogue of the Echinoidea (sea urchins, phylum Echinodermata) collected by the IN2021_V04 and IN2022_V08 expeditions to the Australian Christmas Island and Cocos (Keeling) Islands Territories

In this catalogue, the 17 species of echinoids collected by the IN2021_V04 and IN2022_V08 expeditions to the Australian Christmas Island and Cocos (Keeling) Islands Territories are described and illustrated.

An RNA interference approach for functional studies in the sea urchin and its use in analysis of Nodal signaling gradients.

We report the first RNAi-based gene knockdowns in a sea urchin. Dicer-Substrate interfering RNAs (DsiRNAs) successfully disrupted expression of multiple transcripts in embryos of the sea urchin Lytechinus variagatus, phenocopying known morpholino and inhibitor knockdowns. We describe our approach for the design of DsiRNAs most likely to target mRNAs of interest. An examination of DsiRNAs directed against pks1, an enzyme necessary for pigment production, reveal destruction of the pks1 mRNA without destroying the now-albino pigment cells. Application of DsiRNA on Nodal-Lefty signaling in this species confirms well-known functional studies. DsiRNA-based knockdowns of nodal and lefty phenocopy morpholino- and drug-based inhibition of expression of these genes. A dilution series of DsiRNAs directed against nodal and lefty reveals new diffusion properties of these signals in specifying dorsal vs ventral mesoderm.

Evaluating the time to detect biological effects of ocean acidification and warming: an example using simulations of purple sea urchin settlement

Ocean acidification (OA) and ocean warming driven by climate change are important stressors for marine species and systems, but documenting and detecting their long-term impacts on biological responses outside of laboratory settings are challenging due to natural variability caused by complex processes and interactions. We used settlement of purple sea urchins Strongylocentrotus purpuratus in the Southern California Bight (USA) over 6 yr as an example data set to parameterize a simulation model for exploring the time needed to detect environmental effects on a biological response. A generalized linear model was used to describe an index of urchin settlement as functions of pH, sea surface temperature (SST), sea surface salinity (SSS), and spatio-temporal factors, demonstrating that settlement was negatively associated with pH (i.e. lower settlement at higher pH) and positively associated with SST and SSS. Monte Carlo simulations were developed from this base model under a variety of alternative scenarios to estimate the time to detect: (1) annual trends in pH and SST time series, (2) pH and SST effects on urchin settlement, and (3) annual trends in urchin settlement. Time to detect pH and SST effects was predominantly influenced by the underlying strength of the relationships and the model uncertainty. Time to detect annual trends in settlement was more sensitive to the severity of long-term OA and warming trends, which had cumulative (at times opposing) effects. This study highlights the variable time scales (2-60+ yr) that may be necessary to detect biological responses to OA and ocean warming and the sensitivity to different assumptions of the study system.