Sea Trout Populations Research Articles

Changes in length-at-first return of a sea trout (Salmo trutta) population in northern France

Changes in length-at-first return of a sea trout (Salmo trutta) population in northern France

Association of ectoparasite Lepeophtheirus salmonis counts on farmed Atlantic salmon and wild sea trout in Scotland.

Parasitic sea lice (Copepoda: Caligidae) colonising marine salmonid (Salmoniformes: Salmonidae) aquaculture production facilities have been implicated as a possible pressure on wild salmon and sea trout populations. This investigation uses monitoring data from the mainland west coast and Western Isles of Scotland to estimate the association of the abundance of adult female Lepeophtheirus salmonis (Krøyer) colonising farmed Atlantic salmon Salmo salar L. with the occurrence of juvenile and mobile L. salmonis on wild sea trout, anadromous S. trutta L. The associations were evaluated using generalised linear mixed models incorporating farmed adult female salmon louse abundances which are temporally lagged relative to dependent wild trout values. The pattern of lags, which is consistent with time for L. salmonis development between egg and infective stage, was evaluated using model deviances. A significant positive association is identified between adult female L. salmonis abundance on farms and juvenile L. salmonis on wild trout. This association is consistent with a causal relationship in which increases in the number of L. salmonis copepodids originating from lice colonising farmed Atlantic salmon cause an increase of L. salmonis abundance on wild sea trout.

Novel large‐scale mapping highlights poor state of sea trout populations

Abstract The state of sea trout in 1251 Norwegian watercourses was assessed based on a scoring system for human pressures, abundance data, and local knowledge. Over 16,000 km of rivers and lakes were available to sea trout in these watercourses, spanning from the temperate to Arctic regions. Sea trout were classified to be in a good or very good state in fewer than 25% of the watercourses and in a poor or very poor state in almost 40%. Twenty‐nine watercourses had lost their sea trout populations. Salmon lice from aquaculture salmon farms had by far the largest adverse effect on sea trout among the human impact factors, both in the number of watercourses (83%) and river area affected (60%), and the total effect on sea trout abundance. Agriculture and hydropower production also had strong adverse impacts (35% and 19% of watercourses), but substantially lower than that caused by salmon lice. Culverts related to road crossings and other habitat alterations also had impacts on sea trout in many watercourses (27%). Exploitation of sea trout has been reduced in Norway in recent years, both in the marine and freshwater fisheries. Yet, the exploitation pressure was moderate or high in almost 14% of the watercourses where the state of sea trout was poor or very poor, suggesting a high potential for overexploitation in these. The state of sea trout was best in the northern sparsely populated areas. However, distribution of watercourses with sea trout in a poor or very poor state was more linked to aquaculture, agriculture, and hydropower production than human population density. The developed approach for large‐scale mapping of state and pressures, which is vital for prioritizing management measures, may inspire other nations in their conservation effort for this important species.

Changes in the spatio-temporal genetic structure of Baltic sea trout (Salmo trutta L.) over two decades: direct and indirect effects of stocking

Several countries have implemented stocking programmes to enhance abundance and fish production by releases of hatchery-reared fish. However, due to fluctuations in population size, stocking history, and potential indirect effects of straying of hatchery-reared fish, it is often difficult to predict how these factors will affect genetic diversity and differentiation patterns among wild populations. This study characterized the population genetic structure and temporal variability of four Estonian sea trout populations by evaluating the degrees of direct and indirect genetic impacts of stocking over two decades using 14 microsatellite loci. Our results demonstrate considerable temporal change combined with weak genetic structuring among studied sea trout populations. We found a reduction of the overall level of genetic differentiation combined with the tendency for increased genetic diversity, and an effective number of breeders (Nb) over the study period. Furthermore, we found that immigration rates (m) from hatchery stocks were highest in the population subjected to direct stocking and in non-stocked populations that were located geographically closer to the stocked rivers. This work suggests that hatchery releases have influenced the genetic diversity and structuring of studied sea trout populations. However, the impact of hatchery releases on the adaptive variation and fitness-related traits in wild trout populations remains to be revealed by more informative genetic markers. This study illustrates the dynamic nature of the population genetic structure of sea trout and the value of long-term genetic monitoring for management and conservation.

Behaviour of anadromous brown trout (Salmo trutta) in a hydropower regulated freshwater system

Many Norwegian rivers and lakes are regulated for hydropower, which affects freshwater ecosystems and anadromous fish species, such as sea trout (Salmo trutta). Lakes are an important feature of many anadromous river systems. However, there is limited knowledge on the importance of lakes as habitat for sea trout and how hydropower affects the behaviour of sea trout in lakes. To investigate this, we conducted an acoustic telemetry study. A total of 31 adult sea trout (532 ± 93 mm total length) were captured by angling in river Aurlandselva, Norway, and tagged between July 20 and August 12, 2021. The tags were instrumented with accelerometer, temperature, and depth sensors, which provided information on the sea trout’s presence and behaviour in lake Vassbygdevatnet. Our results indicate that there was a large prevalence of sea trout in the lake during the spawning migration, and that the sea trout were less active in the lake compared to the riverine habitats. An increase in activity of sea trout in the lake during autumn might indicate that sea trout spawn in the lake. However, the discharge from the high-head storage plant into the lake did not affect the depth use or activity of sea trout in the lake. Furthermore, the large prevalence of spawners in the lake during autumn will likely cause an underestimation of the size of the sea trout population in rivers with lakes during annual stock assessment. In conclusion, our results could not find evidence of a large impact of the discharge on the behaviour of sea trout in the lake.

Parentage-based tagging and parentage analyses of stocked sea trout in Vistula River commercial catches

The longest Baltic River, the Vistula, historically hosted numerous sea trout populations. However, dam construction in the twentieth century drastically reduced the spawning migration rate. Reduced natural reproduction has resulted in a population collapse and, consequentially, a substantial reduction in catches. In response, like other Baltic countries, Poland has initiated an intensive stocking program, mainly involving smolt. Initially, stocking was conducted primarily with offspring of sea trout caught during spawning migration. Currently, due to difficulties in obtaining fish, most stocking involves fish from breeding stocks. Therefore, determining the proportion of fish derived from stocking has become an important issue. Experiments based on traditional tagging did not provide sufficient material for analysis; hence, we decided to use genetic methods based on analysis of relatedness. In this study, we performed parentage-based tagging and an analysis of the origins of parent animals used for artificial spawning in 2013, and offspring returning to the Vistula in subsequent years. We based the analysis on three different algorithms and compared the results, showing that the presented methods were effective for estimating mass stocking success. The study also indicated that a certain level of natural reproduction in the Vistula continues to occur. The proportion of sea trout from spawning in 2013 in Vistula sea trout catches from 2017 to 2018 was approximately 30%.

Characterization of a Novel Infectious Pancreatic Necrosis Virus (IPNV) from Genogroup 6 Identified in Sea Trout (Salmo trutta) from Lake Vänern, Sweden.

In November 2016, infectious pancreatic necrosis virus (IPNV) was isolated from a broodstock female of landlocked sea trout (Salmo trutta) in Lake Vänern in Sweden. VP2 gene sequencing placed the IPNV isolate in genogroup 6, for which pathogenicity is largely unknown. Lake Vänern hosts landlocked sea trout and salmon populations that are endangered, and thus the introduction of new pathogens poses a major threat. In this study we characterized the novel isolate by conducting an infection trial on three salmonid species present in Lake Vänern, whole genome sequencing of the isolate, and prevalence studies in the wild sea trout and salmon in Lake Vänern. During the infection trial, the pathogenicity of the Swedish isolate was compared to that of a pathogenic genogroup 5 isolate. Dead or moribund fish were collected, pooled, and analyzed by cell culture to identify infected individuals. In the trial, the Swedish isolate was detected in fewer sample pools in all three species compared to the genogroup 5 isolate. In addition, the prevalence studies showed a low prevalence (0.2-0.5%) of the virus in the feral salmonids in Lake Vänern. Together the data suggest that the novel Swedish IPNV genogroup 6 isolate is only mildly pathogenic to salmonids.

In sea trout, the physiological response to salmon louse is stronger in female than in males.

The aims of this study were to compare male and female sea trout (Salmo trutta) with respect to their hypo-osmoregulatory ability over a simulated migration to seawater and their clinical and physiological response to salmon louse (Lepeophtheirus salmonis) infection in seawater and over a simulated pre-mature return to freshwater. For this purpose, 2-year-old hatchery-reared male and female brown trout (F1 offspring of wild caught anadromous fish) were infected with salmon lice and measured for changes in plasma ions, glucose, lactate and osmolality and relative heart, liver and gonad sizes during a simulated seawater migration and thereafter a premature return to freshwater after 4weeks in seawater (pre-adult louse). Un-infected trout served as control. Male trout used longer time to develop full hypo-osmoregulatory ability in seawater and showed a stronger response in plasma glucose and lactate following simulated premature return to freshwater, compared to female trout. Response to salmon louse was stronger in female trout, shown by stronger osmotic stress by chalimus (plasma Cl-) and pre-adult louse (plasma osmolality) and elevated relative liver size (hepatosomatic index) by pre-adult louse in female compared to male trout. Moreover, high plasma cortisol in infected female and low plasma cortisol in infected male trout produced a significant treatment-sex interaction on plasma cortisol. Lice infection intensity was initially higher in male (0.18 lice g-1) compared to female trout (0.11 lice g-1) at the chalimus stage, but equal between sexes at the pre-adult stage (male 0.15 and female 0.17 lice g-1). This study showed that female trout were better adapted for changes in water salinity, while male trout were more robust against salmon louse infection. These results suggests that the elevated salmon louse infection pressure generated by salmon farming have strong and unexplored negative effects on wild sea trout populations. Further research on this topic is vital for the conservation of wild sea trout populations.

Saltwater spawning grounds of sea-run brown trout (Salmo trutta) in tidal waters of a major Norwegian river

Sea-run brown trout (Salmo trutta) have a highly phenotypically plastic life history that allows them to be effective colonizers and competitors in freshwater. This paper documents a previously unknown spawning behaviour in a brackish, tidally influenced estuary 14 km from the mouth of the Vosso River, a major Atlantic salmon- and sea-run brown trout–producing river in western Norway. Putative spawning gravel was observed, and sea-run brown trout deposited eggs that hatched in April. Survival of recruits was high (> 95%) in the tidal spawning gravel. These areas are strongly tidally influenced with a peak of 23.17 psu recorded at the lowest spawning ground. The observation of spawning so far from the river mouth may be unique in such a system with a long estuary but provides important insight into the biology of sea trout. Invasion of pink salmon, also known to spawn in estuaries, may negatively affect the competitive balance of sea trout with other salmonids in rivers where sea trout populations rely on recruitment from these relatively extreme spawning areas. Restoration of estuaries that have been modified by dredging or channelization may be important to ensure quality and heterogenous habitat for sea trout spawning given that haline spawning grounds could contribute to population resilience.

Identification of Environmental Factors that Influence the Upstream Migration of Sea Trout Salmo trutta in Shetland Waters

Migrating sea trout Salmo trutta L. in the waters of the Shetland Islands (UK) were once found in abundant numbers but they have been in decline since the mid-1980s. Therefore, it is becoming ever more critical to investigate sea trout behaviour with respect to the prevailing environmental conditions in the unique Shetland habitat so that we can determine how this prized and important species might be re-established to more sustainable levels. Here, during a period of four months (July to October) in 2015, environmental and fish catch rate data were collected for a small sample size of sea trout caught at six Shetland locations. We then looked for trends and correlations in the data that might help account for the migratory behaviour of the fish with respect to the environmental conditions at the time of capture. Our data showed that wind speed and pH correlated to the catch rate. However, no significant correlation was found between the water temperature, air temperature, barometric pressure, or humidity, and catch rate. Multivariate regression showed that wind speed and pH explained 26.3% of the variance in the catch rate. The sex ratio of the sea trout caught was skewed towards females at a ratio of 4.7 : 1.0 and the largest trout caught were all female. Recording biological data and understanding the migration patterns and behaviours of the remaining wild populations of sea trout are important for optimizing management plans to support current efforts to increase the numbers of this valuable anadromous species in Shetland waters.

Sea trout Salmo trutta in the subarctic: home-bound but large variation in migratory behaviour between and within populations.

Anadromous brown trout (sea trout), Salmo trutta, is currently in decline throughout its range, largely due to anthropogenic stressors in freshwater and marine habitats. Acoustic telmetry was utilized to study the marine migration of sea trout post-smolts from three populations in a relatively pristine subarctic fjord system. While at sea, the sea trout spent a substantial part of their time close to their natal river, preferred near shore over pelagic habitats and were strongly surface oriented. Despite a fidelity towards local areas, the sea trout utilized various parts of the fjord system, with maximum dispersion >30 km and total migration distance >300 km. Almost half of the sea trout (44%) migrated between river outlets, indicating that a metapopulation approach may be appropriate when managing neighbouring sea trout populations at high latitudes. Furthermore, the different populations displayed different migratory behaviours in terms of distance migrated, dispersion from origin and the likelihood of leaving their home area. This variation in migratory behaviour is likely influenced by spatiotemporal differences in habitat quality between sites, indicating that local habitat variations may promote population-specific behavioural responses even in relatively confined fjord systems.

Has stocking contributed to an increase in the rod catch of anadromous trout (Salmo trutta L.) in the Shetland Islands, UK?

The stocking of hatchery-origin fish into rivers and lakes has long been used in fisheries management to try to enhance catches, especially for trout and salmon species. Frequently, however, the long-term impacts of stocking programmes have not been evaluated. In this study, the authors investigate the contribution of a stocking programme undertaken to support the rod catch of sea trout in the Shetland Islands, UK. Once a highly productive recreational fishery, Shetland sea trout catches crashed in the mid-1990s. Around the time that stocking began, increases in rod catches were also reported, with advocates of the stocking highlighting the apparent success of the programme. Using a suite of genetic markers (microsatellites), this study explores the contribution of the stocking programme to the Shetland sea trout population. The authors found that the domesticated broodstock and wild spawned brown trout from seven streams were genetically distinct. Despite extensive stocking, wild spawned brown trout dominated, even in those streams with a long history of supplementation. The majority of sea trout caught and analysed were of wild origin - only a single individual was of pure stocked origin, with a small number of fish being of wild × stocked origins. This study suggests that stocking with a domesticated strain of brown trout has made only a very limited contribution to the Shetland Islands rod catch, and that the revival of sea trout numbers appears to be driven almost exclusively by recovery of trout spawned in the wild.

Factors influencing return rate and marine residence duration in sea trout populations in Central Norway.

Brown trout (Salmo trutta) display extensive plasticity in marine migratory behaviours, with marine migrations considered to be an adaptive strategy which enables sea trout to maximize growth and reproductive potential. However, marine migrations are not without associated costs, including threats posed by ever-increasing salmon lice (Lepeophtheirus salmonis) infestations. In the present study, we used passive integrated transponder technology to characterize variability in sea trout migration behaviour amongst three catchments situated in a region of intensive salmon farming in central Norway. Specifically, we investigate how lice infestation, out-migration date and body size alter sea trout return rate and marine residence duration during the first out-migration to sea from each catchment. Distinct catchment-specific differences in sea trout out-migration size and the number of cohorts were observed, but larger body size did not guarantee the successful return of migrating trout. The marine residence duration of individuals that successfully returned to freshwater was positively correlated with lice infestation risk, suggesting for these individuals the lethal infestation threshold had not been reached. Our results also suggest that sea trout populations from lotic-dominated catchments are potentially at greater risk from size-related threats to their survival encountered during their marine migrations than sea trout from lentic-dominated catchments. The variability in sea trout migratory behaviour amongst catchments observed here emphasizes the challenges fisheries managers face when deciding the best actions to take to protect the anadromous portion of brown trout populations.

Development of a risk assessment method for sea trout in coastal areas exploited for aquaculture

The regulation of aquaculture production in Norway considers the potential impact of salmon lice on wild fish. However, most attention has been focused on impacts on wild Atlantic salmon, despite the fact that anadromous brown trout spend the majority of their marine phase in coastal waters, where salmon lice have the highest impact. In the present study, we first suggest changes in marine living area and marine feeding time as sustainability indicators for first-time migrant sea trout, as high salmon lice densities may exclude sea trout from otherwise usable habitat and force them to return early to freshwater. Further, a method based on a bio-hydrodynamic model was developed to serve as a proxy for these indicators. The method accounted for the size, migration timing and spatial extent of sea trout and was demonstrated in 2 Norwegian salmon aquaculture production areas, Hardangerfjord (PO3) and Romsdalsfjord (PO5), and 2 focal rivers from within each fjord. Based on these comparisons, we exemplify how the change in marine living area and marine feeding time differed between PO3 and PO5 and within the areas. Sea trout migrating to sea late (June 5) were always more affected by lice than those migrating early (April 24) or at intermediate dates (May 15). Our estimates revealed dramatic potential impacts of salmon lice on sea trout populations, which were greatly influenced by spatial and temporal aspects. Considering the negative impacts of salmon lice on sea trout, a holistic view of environmental interactions between aquaculture and wild species that depend on habitats exploited for production is necessary.

Modeling salmon lice effects on sea trout population dynamics using an individual-based approach

Salmon lice Lepeophtheirus salmonis infestation of sea trout Salmo trutta results in both additional marine mortality and behavioral changes which may contribute to sea trout population decline. For effective management of activities that increase exposure to salmon lice, such as salmon aquaculture, it is necessary to have a full understanding of how salmon lice may affect sea trout populations. An individual-based model (IBTRUTTA) was therefore developed to investigate the potential effects of salmon lice infestation on sea trout population abundance and dynamics based on data from the River Halselva and Altafjord system in northern Norway. This model allowed investigation of the effect of lice-induced mortality and also the compensatory salmonid behavioral mechanisms of premature return to freshwater, either persistent for overwintering or transitory after which sea trout could go back to sea. It was found that, in the absence of compensatory mechanisms, even low rates of lice infestation could lead to marked declines in sea trout abundance. Compensatory behavioral mechanisms had the potential to reduce these declines, but persistent premature return resulted in reduced body mass of returning adults. The shape of the stock-recruitment relationship was also shown to strongly affect how lice-induced mortality impacted the population.

System-specific salmon louse infestation thresholds for salmon farms to minimize impacts on wild sea trout populations

Salmon lice Lepeophtheirus salmonis from aquaculture can cause negative impacts on sea trout Salmo trutta and other wild salmonids. Long-term records from 5 Irish rivers were used to explore relationships between annual sea trout runs and estimated total number of lice on nearby salmon farms. It was hypothesised that local environmental conditions may result in system-specific differences in realised louse pressure on sea trout. Louse count was thus tested as an absolute number and as a relative pressure, i.e. standardised by farm. When the standardised total number of mobile lice on a given salmon farm in April was above baseline level (50th percentile of observed annual values on that farm), there was a high probability of a below-average sea trout run in the local river. Absolute louse counts did not show an important effect on runs. This finding suggests that salmon farm louse production in spring can have a strong system-specific regulating effect on wild sea trout populations. Total number of lice on a farm was most strongly driven by changes in individual infestation rate, with a lesser effect of stocking density. Thresholds for number of mobile lice per farmed salmon required to maintain total louse count below the baseline varied with stocking density and among systems: greater density required lower infestation rate. Regulations relying on a generic louse threshold to trigger treatment are not sufficient to protect sea trout populations—stocking density and site characteristics must be considered to evaluate system-specific infestation pressure and impacts on wild salmonids.

Comparative transcriptomics of spotted seatrout (Cynoscion nebulosus) populations to cold and heat stress.

Resilience to climate change depends on a species' adaptive potential and phenotypic plasticity. The latter can enhance survival of individual organisms during short periods of extreme environmental perturbations, allowing genetic adaptation to take place over generations. Along the U.S. East Coast, estuarine‐dependent spotted seatrout (Cynoscion nebulosus) populations span a steep temperature gradient that provides an ideal opportunity to explore the molecular basis of phenotypic plasticity. Genetically distinct spotted seatrout sampled from a northern and a southern population were exposed to acute cold and heat stress (5 biological replicates in each treatment and control group), and their transcriptomic responses were compared using RNA‐sequencing (RNA‐seq). The southern population showed a larger transcriptomic response to acute cold stress, whereas the northern population showed a larger transcriptomic response to acute heat stress compared with their respective population controls. Shared transcripts showing significant differences in expression levels were predominantly enriched in pathways that included metabolism, transcriptional regulation, and immune response. In response to heat stress, only the northern population significantly upregulated genes in the apoptosis pathway, which could suggest greater vulnerability to future heat waves in this population as compared to the southern population. Genes showing population‐specific patterns of expression, including hpt, acot, hspa5, and hsc71, are candidates for future studies aiming to monitor intraspecific differences in temperature stress responses in spotted seatrout. Our findings contribute to the current understanding of phenotypic plasticity and provide a basis for predicting the response of a eurythermal fish species to future extreme temperatures.

Effect of restoration measures in Atlantic rivers: A 25‐year overview of sea and riverine brown trout populations in the River Bidasoa

AbstractEffective protection of migratory fish requires long‐term conservation encompassing active restoration and management measures with follow‐up studies. The main findings of long‐term (1995–2019) monitoring of anadromous and potamodromous brown trout Salmo trutta in the River Bidasoa are presented. The main aims were evaluating trout number and median migration date changes, and assessing the effects of management (closures, size limits and quotas, fish stoking) and connectivity measures (fishways and weir removals). Results showed an increasing trend in upstream migrants and decrease in migration dates (earlier migrations). Effects of overlapping measures were difficult to differentiate and were affected by environmental conditions. Statistical analysis demonstrated that fishing closures (2008–2011) and fishway construction (2008) were of great importance, whereas the effect of fish stocking (2003–2012) was variable and unclear. The unexpectedly short‐term effect of three weir removals (2014–2016) may have been due to unusually high discharges in March, affecting the recruitment during previous years.

Quantifying an overlooked aspect of partial migration using otolith microchemistry.

For the first time, an overlooked aspect of partial migration was quantified using otolith microchemistry and brown trout, Salmo trutta, as a model species. Relative contributions of freshwater resident and anadromous female brown trout to mixed-stock sea trout populations in the Baltic Sea were estimated. Out of 236 confirmed wild sea trout sampled around the coast of Estonia 88% were of anadromous maternal origin and 12% were of resident maternal origin. This novel finding underscores the importance of the resident contingent in maintaining the persistence and resilience of the migratory contingent.

Fine-scale population genetic structure of Endangered Caspian Sea trout, Salmo caspius: implications for conservation

Many populations of Caspian Sea trout (Salmo caspius)—a nationally endangered species in Iran—have been extirpated or depleted due to anthropogenic impacts. The Lar National Park hosts large populations of Caspian Sea trout, which have not been subject to fisheries management programs before, but the population/s also face different human-related threats that may endanger their sustainability. A total of 357 Caspian Sea trout collected from different streams in Lar National Park were genotyped at 7978 filtered SNP using Genotyping-By-Sequencing to document population genetic structure and the contribution of each population/habitat to lake-run trout fisheries. Our results revealed a fine-scale population genetic structure, which is probably a product of factors including natural and artificial barriers to gene flow, geographic distance, and behavioral differences between resident and lake-run trout. Mixed-Stock Analyses revealed a high contribution from four panmictic populations of the national park to lake-run fish and almost no contribution from streams located in upper reaches or from streams with hydro-chemical or physical barriers. Our results highlighted the necessity for a more serious conservation plan for both the populations contributing greatly to lake fisheries and the highly diverged upstream populations due to their uniqueness.