High-resolution multibeam data integrated with seismic reflection profiles are used to identify and characterize the main primary volcanic and erosive-depositional features along the submarine part (about the 80%) of the active Pantelleria volcano located in the Sicily Channel. Volcanic features include lava flows, cones and elongated ridges. Lava flows are mainly recognized over the insular shelf, while volcanic cones and ridges are mostly concentrated along the steep submarine flanks, especially along the wider SE and NW ones. A strong volcano-tectonic interaction is envisaged for their formation, as indicated by their preferential elongation or alignment along the (main) SE-NW and (secondary) SW-NE directions that have controlled the evolution of the whole volcanic edifice. Erosive-depositional features mainly include small-scale landslide scars and narrow gullies affecting the edge of the insular shelf and overlying submarine depositional terraces. Gullies sometimes merge downslope in larger channels, whose formation is primarily controlled by the distribution of volcanic features and/or shelf sectors characterized by different age or lithologies. Based on the marked morphological differences between the different flanks of the Pantelleria volcano, we infer an overall migration of the volcanic activity from SE to NW over time. This migration is apparently in contrast with the presence of a much wider but shallower NW insular shelf with respect to the SE one. This anomaly can be explained through a two-stage model, with the formation, in the NW sector, of a polygenic shelf rejuvenated by volcanic progradation during the last eustatic hemicycle. The different depths of the insular shelf edge around the island also provide insights on vertical deformations that affected the Pantelleria volcano during the Late-Quaternary.