Maintaining lysosomal zinc (Zn2+) homeostasis is crucial for cellular functionality, with its dysregulation implicated in the progression of neurodegenerative disorders, notably Alzheimer's disease (AD). The paucity of effective tools for precise lysosomal Zn2+ visualization has been a significant barrier to elucidating its role in AD. In response, a highly sensitive and selective novel fluorescent probe based on a salicylaldehyde Schiff base derivative, SSb, was developed to visualize Zn2+ dynamics. Our findings unveil a previously uncharacterized Zn2+ transport mechanism via zincosomes, highlighting their engulfment by mitochondria during autophagy, facilitated by SSb. Significantly, Zn2+ levels were found to be elevated in the brains of AD model mice, associated with amyloid-β (Aβ) deposits. Additionally, our study indicates an abnormal activation of autophagy in AD models, suggesting that Zn2+ increment may exacerbate AD pathology by fostering Aβ deposition and toxicity. This investigation provides valuable insights into Zn2+ homeostasis and its impact on AD, laying the groundwork for novel diagnostic and therapeutic avenues in combating AD, further reflecting the interdisciplinary nature of chemical engineering and biomedical research.