Heavy metal pollution in water can cause severe environmental problems, harm the ecosystem, and ultimately threaten human health. The traditional methods used to remove heavy metals from water are expensive, inefficient, and can cause secondary pollution. However, microalgae have potential applications in the removal of toxic heavy metal pollutants from water. In this study, six green algae were screened in terms of their ability to adsorb cadmium (Cd) and lead (Pb) from a liquid medium. Ion content analyses confirmed that Scenedesmus acuminatus had the strongest Cd- and Pb-absorption ability. S. acuminatus was subjected to Cd and Pb treatments, and then transcriptome sequencing analysis was conducted. The results of Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses indicated that the “proteasome” pathway was enriched with differentially expressed genes (DEGs) under Cd treatment, and the “photosynthesis” pathway was enriched with DEGs under Pb treatment. These results imply that the proteasome pathway maintained protein homeostasis and cellular activity by degrading damaged proteins under Cd toxicity, and that photosynthesis was affected by Pb toxicity in S. acuminatus. In conclusion, S. acuminatus showed a strong ability to accumulate Cd/Pb and might alleviate heavy metal toxicity and reduce heavy metal efflux using the ubiquitin-proteasome system. The results of this study identify a novel microalgal strain with potential applications in phytoextraction and phytoremediation, and provide information about the molecular mechanisms of Cd/Pb accumulation in this alga. These data provide a theoretical basis for reducing Cd/Pb toxicity and will be useful for devising strategies to protect aquatic animals and plants.
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