Salt-tolerant Rice Cultivars Research Articles

γ-Aminobutyric Acid Alleviates Salinity-Induced Impairments in Rice Plants by Improving Photosynthesis and Upregulating Osmoprotectants and Antioxidants

Salt stress is a significant abiotic stress that hinders the growth of rice (Oryza sativa L.) and reduces their yield. Previous research has examined the synthesis of γ-aminobutyric acid (GABA) and its role in plant resistance under various abiotic stresses. However, the synthesis of GABA and its ability to mitigate damage caused by salt stress—particularly its effects on osmotic adjustment, antioxidant defense, photosynthesis, and overall plant growth throughout the entire rice lifecycle—remains unclear. Therefore, we conducted two experiments using salt-tolerant rice cultivar Lianjian 5 (J-5) and salt-susceptible cultivar Lianjing 7 (L-7). In Experiment I, RNA-seq (RNA sequencing) was used to analyze the differential expression of the transcriptome between CK and salinity treatments, revealing the key roles of GABA in salt tolerance. In Experiment II, different levels of exogenous GABA were applied to salt-stressed plants to investigate its physiological role in enhancing salt tolerance. Therefore, RNA-seq (RNA sequencing) was used to analyze the differential expression of the transcriptome between CK and salinity treatments, revealing the key roles of GABA in salt tolerance. Subsequently, different levels of exogenous GABA were applied to salt-stressed plants to investigate its physiological role in enhancing salt tolerance. We measured the activities of superoxide dismutase, peroxidase, and catalase, as well as photosynthetic characteristics such as photosynthesis, transpiration, chlorophyll content, stomatal density and size, and leaf anatomical features. The RNA-seq analysis revealed that GABA production is enhanced via the glutamate decarboxylase (GAD) gene (LOC4333932) in the salt-resistant rice cultivar. Exogenous GABA application improves salt-stress tolerance by increasing endogenous ABA and GABA contents, which enhance osmotic adjustment, boost antioxidant defenses, and regulate ion balance. These combined effects help maintain photosynthetic efficiency and support overall plant growth under salt-stressed environments. Additionally, the increased proportion of mesophyll cell periphery covered by chloroplasts (Sc/Sm) indicated enhanced mesophyll conductance. These helped maintain photosynthesis under saline conditions while reducing water consumption.

Variability of soil chemical properties and rice productivity in salt-affected soil in the north coastal rice field of Central Java, Indonesia

A coastal rice field is generally characterized by salt-affected soil and low soil quality for rice cultivation. Identifying soil chemical properties in these areas is necessary to determine soil management options for rice production. Therefore, soil samples were collected from 33 sampling points in the Wedung Sub-district of Demak Regency in the late dry season of 2021 to evaluate the variation among soil chemical characteristics in a coastline rice field. Soil samples were obtained beneath the topsoil (0-20 cm soil depth) and observed for electrical conductivity, exchangeable potassium, sodium, calcium, magnesium, and cation exchange capacity. Soils in the research field were categorized as slightly salty (0.75-2 dS m-1) to lightly salty (2.0-4.0 dS m-1) with very high sodium (>2 cmol(+) kg-1). Exchangeable potassium was dominated by moderate (0.3-0.7 cmol(+) kg-1) and low categories (0.2-0.3 cmol(+) kg-1). Based on soil calcium-to-magnesium ratios, around 6% of all samples were classified as calcium-deficient. The range of soil cation exchange capacity was 22-30 cmol(+) kg-1 and classified as high soil cation exchange capacity. Rice productivity in the salt-affected soil was around 4 t ha-1. Strategies for soil and controlling plants, such as soil amelioration and salt-tolerant rice cultivars, should be pursued to support plant growth and enhance rice productivity in the salt-affected soil, particularly in the coastal area.

Rice OsCIPK17-OsCBL2/3 module enhances shoot Na+ exclusion and plant salt tolerance in transgenic Arabidopsis

Soil salinity is detrimental to plant growth and remains a major threat to crop productivity of the world. Plants employ various physiological and molecular mechanisms to maintain growth under salt stress. Identification of genes and genetic loci underlying plant salt tolerance holds the key to breeding salt tolerant crops. CIPK-CBL pathways regulate adaptive responses of plants (especially ion transport) to abiotic stresses via fine-tuned Ca2+ signal transduction. In this study, we showed that over-expression of OsCIPK17 in Arabidopsis enhanced primary root elongation under salt stress, which is in a Ca2+ dependent manner. Further investigation revealed that, under salt stress, OsCIPK17 transcript level was significantly induced and its protein moved from the cytosol to the tonoplast. Using both Y2H and BiFC, tonoplast-localised OsCBL2 and OsCBL3 were shown to interact with OsCIPK17. Interestingly, over-expressing salt-induced OsCBL2 or OsCBL3 in Arabidopsis led to enhanced primary root elongation under salt stress. In this process, OsCIPK17 was shown recruited to the tonoplast (similar to the effect of salt stress). Furthermore, transgenic Arabidopsis lines individually over-expressing OsCIPK17, OsCBL2 and OsCBL3 all demonstrated larger biomass and less Na + accumulation in the shoot under salt stress. All data combined suggest that OsCIPK17- OsCBL2/3 module is a major component of shoot Na+ exclusion and therefore plant salt tolerance, which is through enhanced Na + compartmentation into the vacuole in the root. OsCIPK17 and OsCBL2/3 are therefore potential genetic targets that can be used for delivering salt tolerant rice cultivars.

Germination and biological adaptation approaches as salt-stress tolerance process in selected paddy cultivars under salinity stress

Cultivating productive paddy crops on salty soil to maximise production is a challenging approach to meeting the world's growing food demand. Thus, determining salinity tolerance rates in specific paddy cultivars is urgently needed. In this study, the salt tolerance traits of selected paddy cultivars, ADT45 and ADT39, were investigated by analysing germination, metabolites (pigments and biomolecules), and enzymatic (Superoxide dismutase (SOD), Catalase (CAT), and Peroxidase (POD) adaptation strategies as salt-stress tolerance mechanisms. This study found that salinity-induced reactive oxygen species (ROS) were efficiently detoxified by the antioxidant enzymes Superoxide dismutase (SOD), Catalase (CAT), and Peroxidase (POD) in ADT45 paddy varieties, followed by ADT39. Salinity stress had a significant impact on pigments and essential biomolecules in ADT45 and ADT39 paddy cultivars, including total chlorophyll, anthocyanin, carotenoids, ascorbic acid, hydrogen peroxide (H2O2), malondialdehyde, and proline. ADT45 demonstrated a significant relationship between H2O2 and antioxidant enzyme levels, followed by ADT39 paddy but not IR64. Morphological, physiological, and biochemical analyses revealed that ADT45, followed by ADT39, is a potential salt-tolerant rice cultivar.

In silico analysis and expression profiling reveal the presence of abiotic stress and developmental stage specific Aconitase genes in rice (Oryza sativa L.)

The growth and yield of crops have been significantly affected by abiotic stresses. Although respiratory metabolism is integral to plants, its understanding within the context of stress adaptation remains limited . While the rice genome contains three Aconitase genes, their specific roles in abiotic stress tolerance and plant development remain largely unexplored. This study aimed to characterize the Aconitase gene family in rice, shedding light on the evolution of Aconitase and its involvement in diverse developmental processes, as well as its response under various abiotic stress conditions. Phylogenetic analysis indicated the evolutionary relationship between rice Aconitase genes and those of other plant species. The prediction of promoter cis-elements revealed the presence of diverse cis-acting elements associated with the response to abiotic stress within the Aconitase gene family. In addition, an analysis of public RNA-seq data indicated the potential involvement of Aconitase genes in various developmental processes and mechanisms related to stress tolerance. Further, qRT-PCR confirmed the expression patterns of Aconitase genes. Expression analysis revealed differential expression of Aconitase genes under cold, drought, ABA, and salt stresses. Elevated levels of the OsAco1 transcript resulted in a phenotype that exhibited increased tolerance to salt stress. Biochemical analysis revealed higher Aconitase activity in the overexpressed line compared to the control plant. Furthermore, the overexpressed line exhibited improved growth and lower H2O2 levels than the control plant following a 2-hour exposure to 200 mM salt stress. These findings suggest a potential role of Aconitase in enhancing salt stress tolerance. Moreover, they lay the foundation for further exploration into the precise involvement of Aconitase in plant developmental processes under various stress conditions, with the ultimate aim of developing salt-tolerant rice cultivars.

Rational Utilization of Sediment Resources Improves Rice Yield and Nitrogen Use Efficiency under Salt Stress

Soil salinization negatively affects rice growth and yield; however, how different sludge sources regulate rice growth and yield under salt stress was rarely investigated. This study evaluated the performance of two salt-tolerant rice cultivars, Chaoyou 1000 and Longliangyou 506, grown in two sediment sources, pond sediment (PS) and river sludge (RS), under salt stress (56 ds m−1 brine irrigation) with conventional soil (CS) used as the control. The results showed that the rice yield under the PS and RS treatments was enhanced by 51.0% and 43.6% as compared with CS, respectively, owing to an improvement in spikelet per panicle, 1000-grain weight, dry matter accumulation, and the chlorophyll content in both rice cultivars. Compared with CS, the total nitrogen accumulation, nitrogen grain production efficiency, nitrogen harvest index, and nitrogen partial productivity under the PS and RS treatments were increased by 18.9–28.9%, 17.0–20.6%, 7.2–16.6%, and 43.8–50.9%, respectively. Moreover, rice grown in PS and RS showed higher activities of nitrogen metabolism-related enzymes (nitrate reductase, glutamine synthetase, and glutamate synthetase) at the heading stage and higher K+ and K+/Na+ contents in the leaves. Overall, a balanced utilization of sediment resources (especially pond sediment) can effectively alleviate salt stress and improve the yield and nitrogen use efficiency in rice.

Effects of integrated nutrient management and urea deep placement on rice yield, nitrogen use efficiency, farm profits and greenhouse gas emissions in saline soils of Bangladesh

Soil salinity is one of the major yield-limiting factors in the coastal ecosystems of Bangladesh. An efficient fertilizer management practice and selection of appropriate crop cultivars could play a crucial role in improving yield and promoting low-carbon agriculture across saline soils. A two-year multi-location field experiment was conducted during the Boro (dry) season (December–April) to investigate the effects of fertilizer management and rice cultivar selection on rice yield, economic viability, and global warming potential (GWP) in coastal saline soils of Bangladesh. The study included seven fertilizer treatments with varying nitrogen rates and sources, as well as two rice cultivars (BRRI dhan67 and BRRI dhan88). The results showed that integrated nutrient management-2 (INM-2) significantly (p < 0.05) increased rice yield and nitrogen use efficiency compared to other treatments for both BRRI dhan67 and BRRI dhan88. Similarly, INM-2 gave a higher return on fertilizer investment and marginal benefit-cost ratio than other treatments in both locations and under both cultivars. BRRI dhan67 significantly (p < 0.05) increased rice yield relative to BRRI dhan88 by 21 % and 52 % at the BRRI farm and Kaliganj in Satkhira, respectively. The cost-dominant analysis excluded BRRI dhan88 and all fertilizer treatments, except urea deep placement (UDP) and INM-2, from consideration in both locations. Consequently, INM-2 and UDP proved to be economically viable in both locations, with INM showing a higher marginal rate of return than UDP in BRRI dhan67. In terms of environmental sustainability, UDP significantly (p < 0.05) reduced GWP and yield-scaled emissions of CH4 by 31 % and 38 % without causing yield loss compared to INM-2. Similarly, BRRI dhan67 significantly (p < 0.05) reduced GWP and yield-scaled emissions of CH4 by 5 and 22 % compared to BRRI dhan88. These findings suggest that selecting salt-tolerant rice cultivars and implementing appropriate fertilizer management practices can enhance economic profitability, ensure food security, and mitigate the adverse effects of climate change in coastal saline soils.

Differential biochemical and metabolic responses of contrast rice cultivars (&lt;i&gt;Oryza sativa&lt;/i&gt; L.) under salt stress

More than half of the global population uses rice as the fundamental staple food; therefore, it is one of the most popular crops in the world. However, it is susceptible to salt stress, particularly among monocot crops, which reduces rice cultivation yield and threatens global food security. This research investigates the role of some factors, including amino acids, antioxidant enzymes, and sugars, in the response to the salinity stress of three contrasting rice cultivars, Dai Thom 8 (salt-sensitive), OC 10 (moderately salt-tolerant), and OM 9577 (salt-tolerant) in the seedling stage. The salt-tolerant varieties exhibited remarkable differences in physiological and biochemical traits, including enhancement of growth capacity, reduction of cell membrane damage via lowering lipid peroxidation, minimization of ROS generation, enhancement of free radical scavenging activity, and SOD, POD, and CAT enzyme activities. Additionally, the study analyzed the presence of 13 sugars using GC-MS and found that all three rice cultivars shared seven common sugars in similar quantities. However, OM 9577 had a higher content of the other six sugars compared to OC 10 and Dai Thom 8. It is one of the important biochemical factors responsible for the difference in the response mechanism to NaCl stress among rice varieties, specifically lyxofuranose (3.268%), a-D-xylopyranose (5.727%), mannopyranose (12.86%), α-D-glucopyranose (6.399%), ß-D-glucopyranose (5.509%), and D-arabinose (1.512%). Furthermore, the quantification of 20 amino acids through HPLC-DAD revealed that the salt-tolerant rice cultivars had higher concentrations of 11 amino acids than the salt-sensitive ones, including proline, isoleucine, serine, ornithine, histidine, glutamic acid, asparagine, alpha-alanine, aspartic acid, glutamine, and valine. These findings provide promising biochemical indicators for selecting salt-tolerant rice cultivars or improving existing varieties through traditional hybridization or gene transfer methods. Understanding these responses can significantly contribute to enhancing rice cultivation and ensuring food security in regions facing salinity challenges.

Effects of Salt Stress on Grain Yield and Quality Parameters in Rice Cultivars with Differing Salt Tolerance.

Rice yield and grain quality are highly sensitive to salinity stress. Salt-tolerant/susceptible rice cultivars respond to salinity differently. To explore the variation in grain yield and quality to moderate/severe salinity stress, five rice cultivars differing in degrees of salt tolerance, including three salt-tolerant rice cultivars (Lianjian 5, Lianjian 6, and Lianjian 7) and two salt-susceptible rice cultivars (Wuyunjing 30 and Lianjing 7) were examined. Grain yield was significantly decreased under salinity stress, while the extent of yield loss was lesser in salt-tolerant rice cultivars due to the relatively higher grain filling ratio and grain weight. The milling quality continued to increase with increasing levels. There were genotypic differences in the responses of appearance quality to mild salinity. The appearance quality was first increased and then decreased with increasing levels of salinity stress in salt-tolerant rice but continued to decrease in salt-susceptible rice. Under severe salinity stress, the protein accumulation was increased and the starch content was decreased; the content of short branched-chain of amylopectin was decreased; the crystallinity and stability of the starch were increased, and the gelatinization temperature was increased. These changes resulted in the deterioration of cooking and eating quality of rice under severe salinity-stressed environments. However, salt-tolerant and salt-susceptible rice cultivars responded differently to moderate salinity stress in cooking and eating quality and in the physicochemical properties of the starch. For salt-tolerant rice cultivars, the chain length of amylopectin was decreased, the degrees of order of the starch structure were decreased, and pasting properties and thermal properties were increased significantly, whereas for salt-susceptible rice cultivars, cooking and eating quality was deteriorated under moderate salinity stress. In conclusion, the selection of salt-tolerant rice cultivars can effectively maintain the rice production at a relatively high level while simultaneously enhancing grain quality in moderate salinity-stressed environments. Our results demonstrate specific salinity responses among the rice genotypes and the planting of salt-tolerant rice under moderate soil salinity is a solution to ensure rice production in China.

OsJRL40, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.

High salinity is a major stress factor affecting the quality and productivity of rice (Oryza sativa L.). Although numerous salt tolerance-related genes have been identified in rice, their molecular mechanisms remain unknown. Here, we report that OsJRL40, a jacalin-related lectin gene, confers remarkable salt tolerance in rice. The loss of function of OsJRL40 increased sensitivity to salt stress in rice, whereas its overexpression enhanced salt tolerance at the seedling stage and during reproductive growth. β-glucuronidase (GUS) reporter assays indicated that OsJRL40 is expressed to higher levels in roots and internodes than in other tissues, and subcellular localization analysis revealed that the OsJRL40 protein localizes to the cytoplasm. Further molecular analyses showed that OsJRL40 enhances antioxidant enzyme activities and regulates Na+-K+ homeostasis under salt stress. RNA-seq analysis revealed that OsJRL40 regulates salt tolerance in rice by controlling the expression of genes encoding Na+/K+ transporters, salt-responsive transcription factors, and other salt response-related proteins. Overall, this study provides a scientific basis for an in-depth investigation of the salt tolerance mechanism in rice and could guide the breeding of salt-tolerant rice cultivars.

Germination and Early Seedling Growth Attributes of Rice (Oryza sativa L.) Cultivars under Different Salinity (NaCl) Stresses

The impact of different salinity stresses [0, 6.4, 12.8, 19.2, and 25.6 dS/m (NaCl)] on the final germination percentage, speed of germination, germination capacity, shoot and root length, seedling vigor index, and total plant dry weight of ten rice cultivars at germination and early seedling stages was investigated in this study. Salinity stress significantly decreased the final germination percentage, speed of germination, germination capacity, shoot and root length, and seedling dry weight in all cultivars, with the most severe effects from level 19.2 and 25.6 dS/m NaCl. Rice cultivars were classified as tolerant, moderately tolerant, moderately susceptible, and susceptible based on the reduction of dry matter, which is considered as the most limiting factor at high NaCl concentrations. The cultivars NJ9108, 3Y9H, 6Y9H, XD22, 5W01, and HLYH3 showed greater efficiency in salt tolerance during germination at 19.4 dS/m salinity. While 20H025, 6Y9H, and XD22 at the seedling stage performed better based on their dry weight reduction. The study found that NJ9108 and XD22 may be used to investigate the effects of salinity on the development processes and physiological consequences at the advanced stage of growth, as salt tolerance during germination and the early seedling stage may be varied from the developed stages. The results suggest that tolerant rice cultivars can be used to study the effects of salinity on the development and other physiological impacts at vegetative and reproductive stages. These findings will support salt-tolerant rice cultivars that may be developed for better production in terms of coping with salinity stresses in the germination and early growth stages.

The Accumulation Characteristics of Different Heavy Metals in Sea Rice

Here heavy metal (Cd, Zn, and Cu) accumulation features of sea rice (a salt-tolerant rice cultivar) were explored to provide a reference for preventing and controlling of heavy metals, screen new plant remediation resources, and offer the basis for safe sea rice production. The sea rice variety Hai Hong 12 (HH12) was used as the research object in the soil culture experiments conducted to investigate the effects of the addition of Cd (0, 1, 2, 4, 8 mg/kg), Zn (0, 100, 200, 300, 400 mg/kg), and Cu (0, 100, 200, 300, 400 mg/kg) on the growth and accumulation of heavy metals in different HH12 parts. At different Cd and Zn concentrations, the root biomass of HH12 decreased significantly and the shoot biomass showed no marked difference; however, Cu stress inhibited the rice biomass. The Cd content in different parts of sea rice increased with an increase in Cd levels. At 8 mg/kg, shoot and spike had the highest Cd content, which was 89.02 and 45.37 mg/kg, respectively. At 1 mg/kg Cd concentration, the Cd transport coefficient of sea rice was the highest (1.36). The Zn content was the highest in sea rice at 400 mg/kg Zn. Zn concentrations in the shoot and spike were 440.95 and 175.51 mg/kg. However, the Zn transport coefficients of all parts were &lt;1 at different Zn concentrations. Sea rice growth was severely hampered by high Cu stress (400 mg/kg). After 200 mg/kg Cu treatment, the highest Cu content was 82.85 mg/kg in shoot and 46.97 mg/kg in spike. The Cu transport coefficients of all parts were also &lt;1 under Cu stress and decreased with an increase in the Cu concentration. In summary, HH12 exhibited a high risk of Cd accumulation, and Cd was more likely to be transported to the grains. Zn accumulation in sea rice had no obvious toxicity to its shoot growth, but its shoot had a slight risk of Zn accumulation. Cu was mostly built up in the HH12 roots, but its ability to move around was low. However, high Cu concentrations slowed the growth of sea rice.

Effects of Salinity Stress at Reproductive Growth Stage on Rice (Oryza sativa L.) Composition, Starch Structure, and Physicochemical Properties.

This study aimed to investigate the changes in polished rice composition, starch structure, and physicochemical properties from three rice cultivars treated with medium and high salinity stress at the reproductive growth stage. The results showed that salt stress led to poor milling and appearance quality, higher total starch content, protein content, higher proportion of the medium, and long chains of amylopectin, as well as gelatinization temperature (GT) but lower amylose content and lower proportion of the short chain of amylopectin. Compared with salt-sensitive cultivars, the salt-tolerant cultivars exhibited lower GT and gelatinization enthalpy, better pasting properties, and more stable crystal structure; therefore, their eating and cooking quality (ECQ) was less affected. The above results imply that salt stress at the reproductive growth stage can degrade ECQ and can slightly increase the pasting property of starch from salt-tolerant rice cultivar.

A NAC Transcription Factor from 'Sea Rice 86' Enhances Salt Tolerance by Promoting Hydrogen Sulfide Production in Rice Seedlings.

Soil salinity severely threatens plant growth and crop performance. Hydrogen sulfide (H2S), a plant signal molecule, has been implicated in the regulation of plant responses to salinity stress. However, it is unclear how the transcriptional network regulates H2S biosynthesis during salt stress response. In this study, we identify a rice NAC (NAM, ATAF and CUC) transcription factor, OsNAC35-like (OsNACL35), from a salt-tolerant cultivar ‘Sea Rice 86′ (SR86) and further show that it may have improved salt tolerance via enhanced H2S production. The expression of OsNACL35 was significantly upregulated by high salinity and hydrogen peroxide (H2O2). The OsNACL35 protein was localized predominantly in the nucleus and was found to have transactivation activity in yeast. The overexpression of OsNACL35 (OsNACL35-OE) in japonica cultivar Nipponbare ramatically increased resistance to salinity stress, whereas its dominant-negative constructs (SUPERMAN repression domain, SRDX) conferred hypersensitivity to salt stress in the transgenic lines at the vegetative stage. Moreover, the quantitative real-time PCR analysis showed that many stress-associated genes were differentially expressed in the OsNACL35-OE and OsNACL35-SRDX lines. Interestingly, the ectopic expression of OsNACL35 triggered a sharp increase in H2S content by upregulating the expression of a H2S biosynthetic gene, OsDCD1, upon salinity stress. Furthermore, the dual luciferase and yeast one-hybrid assays indicated that OsNACL35 directly upregulated the expression of OsDCD1 by binding to the promoter sequence of OsDCD1. Taken together, our observations illustrate that OsNACL35 acts as a positive regulator that links H2S production to salt stress tolerance, which may hold promising utility in breeding salt-tolerant rice cultivar.

Different responses of rice cultivars to salt stress and the underlying mechanisms

<p id="C3">The objective of this study is to elucidate the responses of physiological traits and yield with different salt stress to salt-tolerant and salt-susceptible rice cultivars. Five salt-tolerant rice cultivars and two salt-susceptible rice cultivars were grown in pots with five different salt concentration levels including 0, 1, 2, 2.5, and 3 g kg^-1 of per pot for two years. Results showed that the yields of salt-tolerant cultivars were less reduced than that of salt-susceptible cultivars, and salt-tolerant cultivars was able to tolerate higher salt concentration of 2.5 g kg^-1. Salt-tolerant varieties produced higher grain yield mainly due to the greater total spikelets per area and higher filled grain percentage under salt stress. Salt-tolerant rice cultivars also had higher activities of superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT), higher contents of osmotic substances such as fructose, trehalose, and sorbitol, and higher K⁺/Na⁺ ratio from mid-tillering to heading. The crop growth rate from tillering to jointing and from heading to maturity, and photosynthetic rate at heading stage were higher in salt-tolerant cultivars than in salt-susceptible cultivars. The above results revealed that the differences in grain yields between salt-tolerant and salt-susceptible rice varieties were mainly due to the performances of physiological traits at mid-tillering, panicle initiation, and heading stages. These growth stages were the key stages that determined the number of panicles, spikelets per panicle, and the percentage of filled grains. The better physiological traits in the salt-tolerant rice varieties during key stages were the basis for higher grain yield. The results of this study could be helpful for the physiological researches and the breeding of salt-tolerant rice.

Integrated Multi-Omics Perspective to Strengthen the Understanding of Salt Tolerance in Rice.

Salt stress is one of the major constraints to rice cultivation worldwide. Thus, the development of salt-tolerant rice cultivars becomes a hotspot of current rice breeding. Achieving this goal depends in part on understanding how rice responds to salt stress and uncovering the molecular mechanism underlying this trait. Over the past decade, great efforts have been made to understand the mechanism of salt tolerance in rice through genomics, transcriptomics, proteomics, metabolomics, and epigenetics. However, there are few reviews on this aspect. Therefore, we review the research progress of omics related to salt tolerance in rice and discuss how these advances will promote the innovations of salt-tolerant rice breeding. In the future, we expect that the integration of multi-omics salt tolerance data can accelerate the solution of the response mechanism of rice to salt stress, and lay a molecular foundation for precise breeding of salt tolerance.

SNP Based Trait Characterization Detects Genetically Important and Stable Multiple Stress Tolerance Rice Genotypes in Salt-Stress Environments.

Soil salinity is a major constraint to rice production in coastal areas around the globe, and modern high-yielding rice cultivars are more sensitive to high salt stress, which limits rice productivity. Traditional breeding programs find it challenging to develop stable salt-tolerant rice cultivars with other stress-tolerant for the saline environment in Bangladesh due to large yield variations caused by excessive salinity fluctuations during the dry (boro) season. We examined trait characterization of 18 advanced breeding lines using SNP genotyping and among them, we found line G6 (BR9621-B-1-2-11) (single breeding line with multiple-stress-tolerant QTL/genes) possessed 9 useful QTLs/genes, and two lines (G4:BR9620-2-7-1-1 and G14: IR 103854-8-3-AJY1) carried 7 QTLs/genes that control the desirable traits. To evaluate yield efficiency and stability of 18 rice breeding lines, two years of field experiment data were analyzed using AMMI (additive main effect and multiplicative interaction) and GGE (Genotype, Genotype Environment) biplot analysis. The AMMI analysis of variance demonstrated significant genotype, environment, and their interaction, accounting for 14.48%, 62.38%, and 19.70% of the total variation, respectively, and revealed that among the genotypes G1, G13, G14, G17, and G18 were shown to some extent promising. Genotype G13 (IR 104002-CMU 28-CMU 1-CMU 3) was the most stable yield based on the AMMI stability value. The GGE biplot analysis indicates 76% of the total variation (PC1 48.5% and PC2 27.5%) which is performed for revealing genotype × environment interactions. In the GGE biplot analysis, genotypes were checked thoroughly in two mega-environments (ME). Genotype G14 (IR103854-8-3-AJY1) was the winning genotype in ME I, whereas G1 (BR9627-1-3-1-10) in ME II. Because of the salinity and stability factors, as well as the highest averages of grain yield, the GGE and AMMI biplot model can explain that G1 and G13 are the best genotypes. These (G1, G6, G13, G14, G17, and G18) improved multiple-stress-tolerant breeding lines with stable grain yield could be included in the variety release system in Bangladesh and be used as elite donor parents for the future breeding program as well as for commercial purposes with sustainable production.

Design of Pokkali Paddy Harvester

The term 'Pokkali' used in the common parlor refers to a salt tolerant traditional rice cultivar grown in the coastal saline soils of Kerala. The conventional method of harvesting of pokkali paddy crop by using sickles. The various farming operations in Pokkali paddy cultivation, the harvesting is done by women labourers by walking on the swampy and marshy inundated paddy fields at waist-deep water, which is laborious, tedious and cumbersome. Though a number of paddy combine harvesters are commercially available, none cannot be used in such marshy water logged areas for harvesting paddy. Hence, a power operated floating harvester with provisions for harvesting and conveying the ear heads (panicles) of submerged paddy. Design of harvester is sequentially carried out for the floating barge, harvesting unit and hydraulic system. The capacity of the hydraulic tank was 150 litres and double acting hydraulic pump has 61.0 min . Harvesting unit of the -1harvester consists of a reel, cutter bar and conveyor. The overall size of the harvester is 6.2 x 1.7 x 1.7 m with a total weight of about 1700 kg.

Polyamine oxidase 3 is involved in salt tolerance at the germination stage in rice

Soil salinity inhibits seed germination and reduces seedling survival rate, resulting in significant yield reductions in crops. Here, we report the identification of a polyamine oxidase, OsPAO3, conferring salt tolerance at the germination stage in rice (Oryza sativa L.), through map-based cloning approach. OsPAO3 is up-regulated under salt stress at the germination stage and highly expressed in various organs. Overexpression of OsPAO3 increases activity of polyamine oxidases, enhancing the polyamine content in seed coleoptiles. Increased polyamine may lead to the enhance of the activity of ROS-scavenging enzymes to eliminate over-accumulated H2O2 and to reduce Na+ content in seed coleoptiles to maintain ion homeostasis and weaken Na+ damage. These changes resulted in stronger salt tolerance at the germination stage in rice. Our findings not only provide a unique gene for breeding new salt-tolerant rice cultivars but also help to elucidate the mechanism of salt tolerance in rice.

Salt stress responses and SNP-based phylogenetic analysis of Thai rice cultivars.

Genetic diversity is important for developing salt-tolerant rice (Oryza sativa L.) cultivars. Certain Thai rice accessions display salt tolerance at the adult or reproductive stage, but their response to salinity at the seedling stage is unknown. In this study, a total of 10 rice cultivars/line, including eight Thai cultivars and standard salt-tolerant cultivar and susceptible line, were screened using a hydroponic system to identify salt-tolerant genotypes at the seedling stage. Different morphophysiological indicators were used to classify tolerant and susceptible genotypes. Phylogenetic analyses were performed to determine the evolutionary relationships between the cultivars. Results showed that 'Lai Mahk', 'Jao Khao', 'Luang Pratahn', and 'Ma Gawk' exhibited salt stress tolerance comparable with the standard salt-tolerance check 'Pokkali'. Whole-exome single-nucleotide polymorphism (SNP)-based phylogenetic analysis showed that the Thai rice cultivars were monophyletic and distantly related to Pokkali and IR29. Lai Mahk and Luang Pratahn were found closely related when using the whole-exome SNPs for the analysis. This is also the case for the analysis of SNPs from 164 salt-tolerance genes and transcription regulatory genes. The tolerant cultivars shared the same haplotype for 16 genes. Overall, the findings of this study identified four salt-stress-tolerant Thai rice cultivars, which could be used in rice breeding programs for salinity tolerance.