The efficiency of the microbial-driven fermentation process in the rumen is closely related to the efficiency of the ruminant host. This experiment examined the effect of manipulating the neonatal microbiota on postnatal development, immune function and productivity (liveweight gain and wool growth parameters). The trial examined the differences between naturally inoculated lambs (maternal control, n = 21) and those given ruminal fluid, which had been collected from ruminally-cannulated ewes, fed either a roughage diet (roughage, n = 14), or a grain-based diet (high grain, n = 14). At lambing, newborn lambs were tagged and weighed. Inoculation lambs received 10 ml of rumen fluid per inoculation, daily, for a total of 7 inoculations. Live weight, body condition scores, wool growth (greasy and clean wool weights), wool length, mean fibre diameter, and differential blood cell counts, and IgG and IgA in both blood and saliva) were quantified from birth until week 18 (slaughter). Total feed intake was recorded from weaning. Ruminal fluid was collected by stomach tube from 12 lambs from each treatment group and their dams (n = 7–8 per treatment, with the lower number of ewes coming about through ewes that had twins) at time of weaning (week 10). The pH of the ruminal fluid, the density of ciliated protozoa in ruminal fluid, and the composition of the ruminal bacterial populations were analysed. At slaughter (week 18), ileal samples were taken from the same focal lambs as were used for microbial analysis. The artificial inoculations resulted in significant differences in ruminal bacterial genera to those of naturally inoculated lambs at time of weaning (some 3 months post-lambing). Significant differences were also apparent in ileal bacterial communities at slaughter, between lambs which had received the inoculum from roughage-fed ewes and naturally inoculated lambs. Both the efficiency (growth, condition, feed conversion efficiency, carcass weight) and indices of health (mortalities, red blood cell count, blood haemoglobin concentration, haematocrit, and eosinophil counts) of the inoculated animals, were affected negatively by the inoculations ( < 0.05). There was a significant interaction between inoculum source and breed in terms of effects on all parameters measured. The effects of the high grain inoculation were significantly affected by breed, with high grain merinos found to have reduced mean fibre diameter (P < 0.05) and increased wool growth relative to the maternal control (P = 0.035). This effect was not noted in the suffolks. In summary, we have demonstrated that long-term effects on ruminal and intestinal microbiota can be generated by intervention in the normal process of ruminal inoculation in neonatal lambs. Moreover, there appeared to be genetic differences in response to artificial inoculation. Whilst the effects of artificial inoculation in this trial were negative in terms of indices of health and production, further studies of maternal diet and its effects on the natural establishment of the neonatal microbiota are warranted given the persistence of the effects and the interaction with breed.
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