The assessment of casualty risks associated with re-entry necessitates a comprehensive analysis of trajectories and the examination of pertinent safety-related quantities such as the ground impact area and ground reaching velocity. In practical scenarios, the presence of uncertainty in input conditions introduces variability in safety-related quantities. Consequently, employing stochastic re-entry trajectory analysis becomes crucial in overcoming the limitations of conventional deterministic analyses. Conducting sensitivity assessments during the break-up phase is imperative to gain more insights into how to manage the variability of safety-related measures. Therefore, this paper conducted a surrogate-based global sensitivity analysis and employed explainability machine learning techniques to unveil the complexities of the relationship between input uncertainty conditions and three key measures: ground-reaching velocity, falling range, and falling time, with the object of interest being the Apollo-type capsule. A three-step polynomial chaos expansion-based strategy was devised to efficiently approximate the discontinuous relationships. The results show that the relationship is characterized by severe discontinuity that separates two modes: low- and high-ground reaching velocity caused by the presence of two distinct trim points, with precautionary measures that should be taken to prevent the occurrence of the latter. From this set of procedures, three key input conditions that significantly affect the safety-related measures were identified, namely, the altitude, pitch rate, and path angle of the capsule during the breakup. Subsequently, explainability techniques were utilized to give suggestions on how to control the input variability and avoid the high ground reaching velocity mode, aiming to achieve more dependable predictions for the three safety parameters mentioned earlier.