The compaction quality of rockfill materials plays a pivotal role in ensuring the stability and durability of runway structures. However, traditional assessment methods relying on limited random sampling may lack representativeness for the entire construction site and overlook potential areas of insufficient compaction. Addressing this challenge, this paper employs the dynamic deformation modulus (EVD), a rapid and nondestructive testing method, to assess the compaction quality of runway rockfill. Subsequently, this paper propose a 3D Conditional Random Field (CRF) model based on EVD to simulate the uncertain spatial distribution of rockfill compaction quality, allowing for the estimation of the overall construction area's compaction quality with a limited number of sample points. The validity of the model is demonstrated through a case study involving a runway expansion project. Additionally, three critical construction factors--namely, measurement points, compaction passes, and compaction materials--are analyzed throughout the construction process. This analysis provides managers with valuable insights and decision-making tools to promptly evaluate the quality of compaction areas, ensuring the stability and durability of the runway.