Although Deep Learning networks generally outperform traditional machine learning approaches based on tailored features, they often lack explainability. To address this issue, numerous methods have been proposed, particularly for image-related tasks such as image classification or object segmentation. These methods generate a heatmap that visually explains the classification problem by identifying the most important regions for the classifier. However, these explanations remain purely visual. To overcome this limitation, we introduce a novel CNN explainability method that identifies the most relevant regions in an image and generates a decision tree based on meaningful regional features, providing a rule-based explanation of the classification model. We evaluated the proposed method on a synthetic blob’s dataset and subsequently applied it to two cell image classification datasets with healthy and pathological patterns.