Context or problemStraw incorporation improves soil fertility but also poses environmental challenges due to increasing methane (CH4) emissions in paddy fields. Whether nitrogen (N) and water management can balance rice yield and CH4 emissions under different crop straw incorporation is still not well-documented. ObjectiveA three-year field experiment was conducted to probe the comprehensive effects of N application ratios and irrigation regimes on rice yield, rhizosphere soil properties, and CH4 emissions, along with the underlying mechanisms of CH4 emission variations among different straw types. MethodsA two-factor randomized block design was used with two Japonica rice cultivars as materials in 2020 and 2021. The straw incorporation treatment included no straw incorporation (NS), wheat straw incorporation (WS), and rape straw incorporation (RS). The N fertilizer application treatments included local farmers' fertilizer practice (LFP) and increasing basal fertilizer rate (IBF). Two irrigation practices, continuously-flooded irrigation (CF) and alternate wetting and drying irrigation (AWD), were designed under the WS and RS treatments in 2022. Results1) WS-IBF and RS-IBF enhanced yield by 6.70∼9.03 % and 8.13∼9.50 % compared to WS-LFP and RS-LFP, respectively. AWD further increased yield by 6.28∼7.76 % compared to CF. 2) WS-IBF and RS-IBF enhanced dissolved organic carbon (DOC) content, synchronously boosted the methanogens (mcrA) and methanotrophs (pmoA) abundances, but decreased the pmoA/mcrA ratio, which significantly promoted CH4 emission flux in early growth stage. This resulted in a 5.04∼8.01 % and 4.60∼7.88 % increase in CH4 emissions compared to WS-LFP and RS-LFP, respectively, but a decrease in yield-scaled CH4 emissions. AWD reduced DOC content, facilitated the conversion of ammonium N to nitrate N, increased dissolved oxygen content, and hence decreased CH4 emissions by 23.41∼24.38 % compared to CF. 3) RS significantly increased microbial biomass C, N, and related metabolites, leading to a 1.29∼2.73 % increase in yield compared to WS. Meanwhile, RS promoted Nitrospira abundance as well as pterin and flavonoid metabolites associated with mcrA inhibition, while decreasing Anaeromyxobacter abundance, ammonium N, and DOC content, resulting in an increase in the pmoA/mcrA ratio and a noticeable drop in CH4 emissions compared to WS. ConclusionsRS combined with IBF and AWD is a more sustainable integrated practice in light of the synergistic improvement in rice production and environmental benefits. ImplicationsThe results reveal that optimizing N and water management can synergize high-yield and low-carbon by regulating rhizosphere microenvironment in rice production under crop straw incorporation.