Roots Of Tomato Plants Research Articles

Transcriptional reprogramming of tomato (Solanum lycopersicum L.) roots treated with humic acids and filter sterilized compost tea

BackgroundTo counteract soil degradation, it is important to convert conventional agricultural practices to environmentally sustainable management practices. To this end, the application of biostimulants could be considered a good strategy. Compost, produced by the composting of biodegradable organic compounds, is a source of natural biostimulants, such as humic acids, which are naturally occurring organic compounds that arise from the decomposition and transformation of organic residues, and compost tea, a compost-derived liquid formulated produced by compost water-phase extraction. This study aimed to determine the molecular responses of the roots of tomato plants (cv. Crovarese) grown under hydroponic conditions and subjected to biostimulation with humic substances (HSs) and filtered sterile compost tea (SCT).ResultsThe 13C CPMAS NMR of humic acids (HA) and SCT revealed strong O-alkyl-C signals, indicating a high content of polysaccharides.Thermochemolysis identified over 100 molecules, predominantly from lignin, fatty acids, and biopolymers. RNA-Seq analysis of tomato roots treated with HA or SCT revealed differentially expressed genes (DEGs) with distinct patterns of transcriptional reprogramming.Notably, HA treatment affected carbohydrate metabolism and secondary metabolism, particularly phenylpropanoids and flavonoids, while SCT had a broader impact on hormone and redox metabolism. Both biostimulants induced significant gene expression changes within 24 h, including a reduction in cell wall degradation activity and an increase in the expression of hemicellulose synthesis genes, suggesting that the treatments prompted proactive cell wall development.ConclusionsThe results demonstrate that HS and SCT can mitigate stress by activating specific molecular mechanisms and modifying root metabolic pathways, particularly those involved in cell wall synthesis. However, gene regulation in response to these treatments is complex and influenced by various factors. These findings highlight the biostimulatory effects of HS and SCT, suggesting their potential application in crop biofertilization and the development of innovative breeding strategies to maximize the benefits of humic substances for crops. Further research is needed to fully elucidate these mechanisms across various contexts and plant species.

Endophytic Bacteria Improves the Growth of Tomato Plants: An Initial Trial Towards Sustainable Agriculture

Abstract Microbe-based biofertilizer remains high demand toward sustainable agriculture. Previous study isolated three potential endophytic bacteria from the root of klutuk banana plants namely K2, K8, and K117. The potencies were indicated by IAA production ability. This experiment examined the influence of root inoculation using these endophytic bacteria on the growth of tomato plants. Isolate preparation was initiated by shaking the three isolates in the Nutrient Broth medium for six hours. The seeds of tomato plants were germinated by soaking in sterile water for an hour after surface sterilization. Then, the soaked seeds were incubated for 3 days on the moist paper towel in the petri dish to achieve a high humidity. The germinated tomato seeds were inoculated by soaking the root tip in the bacterial isolates for 10 minutes. Subsequently, the inoculated tomato plants were grown on sterile soils in the greenhouse condition. The height of the plants, leaf count, root length, and quantity of roots were assessed 28 days after inoculation (dai). The t-test analysis indicated two isolates, K2 and K117, significantly improved the height of the plants, leaf count and root lengths compared to the control. In addition, all isolates significantly increased the number of roots of tomato plants. This finding revealed the plant growth improvement caused by root inoculation by these potential endophytic bacteria. This preliminary study gives additional information about a novel biofertilizer for sustainable agriculture.

Biological Control of a Root-Knot Nematode Meloidogyne incognita Infection of Tomato (Solanum lycopersicum L.) by the Oomycete Biocontrol Agent Pythium oligandrum.

The biocontrol agent Pythium oligandrum, which is a member of the phylum Oomycota, can control diseases caused by a taxonomically wide range of plant pathogens, including fungi, bacteria, and oomycetes. However, whether P. oligandrum could control diseases caused by plant root-knot nematodes (RKNs) was unknown. We investigated a recently isolated P. oligandrum strain GAQ1, and the P. oligandrum strain CBS530.74, for the control of an RKN Meloidogyne incognita infection of tomato (Solanum lycopersicum L.). Initially, P. oligandrum culture filtrates were found to be lethal to M. incognita second-stage juveniles (J2s) with up to 84% mortality 24 h after treatment compared to 14% in the control group. Consistent with the lethality to M. incognita J2s, tomato roots treated with P. oligandrum culture filtrates reduced their attraction of nematodes, and the number of nematodes penetrating the roots was reduced by up to 78%. In a greenhouse pot trial, the P. oligandrum GAQ1 inoculation of tomato plants significantly reduced the gall number by 58% in plants infected with M. incognita. Notably, the P. oligandrum GAQ1 mycelial treatment significantly increased tomato plant height (by 36%), weight (by 27%), and root weight (by 48%). A transcriptome analysis of tomato seedling roots inoculated with the P. oligandrum GAQ1 strain identified ~2500 differentially expressed genes. The enriched GO terms and annotations in the up-regulated genes suggested a modulation of the plant hormone-signaling and defense-related pathways in response to P. oligandrum. In conclusion, our results support that P. oligandrum GAQ1 can serve as a potential biocontrol agent for M. incognita control in tomato. Multiple mechanisms appear to contribute to the biocontrol effect, including the direct inhibition of M. incognita, the potential priming of tomato plant defenses, and plant growth promotion.

Enzyme production by the entomopathogenic fungi Beauveria bassiana and Metarhizium anisopliae and their application in the control of nematodes (Haemonchus spp. and Meloidogyne incognita) in vitro

Brazil is affected by the infection of gastrointestinal nematodes (Haemonchus spp.) because it causes subclinical diseases in small ruminants that directly affect weight and milk production and, in turn, generate a health risk for the animals. In the same way root-knot nematodes (Meloidogyne incognita) is a serious disease, which parasitize the roots of tomato plants causing damage such as poor nutrient absorption leading to significant yield losses. In order to minimize the economic impact of these nematodes, it is important to establish new control strategies. Beauveria bassiana and Metarhizium anisopliae are two main mycoinsecticides used to control many orders of insects, such as Lepidoptera and Hemiptera. These fungi have the ability to produce extracellular enzymes, which play an important role to control in the pest infection process. The aim of this study was to evaluate the production of proteases and chitinases by the entomopathogenic fungi B. bassiana and M. anisopliae on different solid and liquid culture media and their application in vitro to the control of Haemonchus spp and Meloidogyne incognita. To achieve this goal, enzymes were produced under solid and liquid fermentation conditions to determine the highest chitinolytic and proteolytic activity of commercial two strain of B. bassiana (IBCB 66 and ESALQ PL63) and M. anisopliae (IBCB 425 and ESALQ E9) in liquid media: SDY broth, YPG culture medium, synthetic, and soluble starch with yeast extract. The solid media tested were: rice supplemented with whey and chrysalis flour mixed with rice. In addition, the nematicidal action of their extracts (containing concentrated enzymes and without fungal cells) was measured. The results showed that the best culture medium (p< 0.01) for protease was solid serum rice medium, with a value for M. anisopliae IBCB 425 of 52 U/mg, and for B. bassiana ESALQ PL63 the value was 36 U/mg, compared to all the tested media. On the other hand, for chitinase of M. anisopliae strain IBCB 425, the activity value was close to 0.60 U/mg. In contrast, for B. bassiana isolate ESALQ PL63, SDY medium was the best inducer for chitinase production, with a value of 0.90 U/mg. Regarding the nematicidal activity of the crude extracts, the reduction percentages were 58% for ESALQ PL63 and 100% for IBCB 425 in the case of animal parasites. For plant parasites, the reduction percentages were 19% for ESALQ PL63 and 71% for IBCB 425. Thus, the use of enzyme-rich crude extracts presents promising control options for pest control.

Response of Origanum dictamnus L. (Cretan dittany) to Five Species of Root-Knot Nematodes (Meloidogyne spp.).

Cretan dittany (Origanum dictamnus L.) is an aromatic and medicinal plant, local endemic of the island of Crete, Greece, occurring naturally to high rocky mountain habitats. Due to its commercial interest, cultivation of this plant has been recently expanded. Since natural infestations by Meloidogyne spp. in field cultivated plants have not been found, its response to infection by M. javanica, M. incognita, M. arenaria, M. hapla and M. luci was investigated in pot experiments. In all experiments, roots of dittany plants exhibited neither galls nor egg masses in contrast to the roots of tomato plants used as controls. Therefore, Cretan dittany appears to be resistant to the five Meloidogyne species tested.

The impact of utilizing oyster shell soil conditioner on the growth of tomato plants and the composition of inter-root soil bacterial communities in an acidic soil environment.

The objective of this study is to examine the impact of various oyster shell soil conditioners, which are primarily composed of oyster shells, on the growth of tomatoes in acidic soil. Moreover, the aim of this investigation is to analyze the variety and structure of soil bacterial populations in close proximity to tomato roots while also contributing to the understanding of the physical, chemical, and biological mechanisms of oyster shell soil conditioners. Tomato plants were grown in acidic red soil in three groups: a control group and a treatment group that used two types of oyster shell soil conditioners, OS (oyster shell powder) and OSF (oyster shell powder with organic microbial fertilizer). A range of soil physicochemical properties were measured to study differences in inter-soil physicochemical parameters and the growth of tomato plantings. In addition, this study utilized the CTAB (Cetyltrimethylammonium Bromide) technique to extract DNA from the soil in order to investigate the effects of oyster shell soil conditioner on the composition and diversity of bacterial populations. Utilizing high-throughput sequencing technologies and diversity index analysis, the composition and diversity of bacterial populations in the soil adjacent to plant roots were then evaluated. Ultimately, correlation analysis was used in this study to explore the relationship between environmental factors and the relative abundance of soil bacteria in the inter-root zone of tomato plants. The findings indicated that the oyster shell soil conditioners were capable of modifying the physicochemical characteristics of the soil. This was evidenced by significant increases in soil total nitrogen (16.2 and 59.9%), soil total carbon (25.8 and 27.7%), pH (56.9 and 55.8%), and electrical conductivity (377.5 and 311.7%) in the OS and OSF groups, respectively, compared to the control group (p < 0.05). Additionally, data pertaining to tomato seed germination and seedling growth biomass demonstrated that both oyster shell soil conditioners facilitated the germination of tomato seeds and the growth of seedlings in an acidic red clay soil (p < 0.05). On the other hand, the application of two oyster shell soil conditioners resulted in a modest reduction in the diversity of inter-root soil bacteria in tomato plants. Specifically, the group treated with OSF exhibited the most substantial fall in the diversity index, which was 13.6% lower compared to the control group. The investigation carried out on the soil between tomato plant roots yielded findings about the identification of the ten most abundant phyla. These phyla together represented 91.00-97.64% of the overall abundance. In the inter-root soil of tomatoes, a study identified four major phyla, namely Proteobacteria, Bacteroidetes, Acidobacteria, and Actinobacteria, which collectively accounted for up to 85% of the total abundance. At the general level, the relative abundance of Massilia increased by 2.18 and 7.93%, Brevundimonas by 5.43 and 3.01%, and Lysobacter by 3.12 and 7.49% in the OS and OSF groups, respectively, compared to the control group. However, the pathogenic bacteria unidentified_Burkholderiaceae decreased by 5.76 and 5.05%, respectively. The correlation analysis yielded conclusive evidence indicating that, which involved the use of CCA (Canonical Correlation Analysis) graphs and Spearman correlation coefficients, pH exhibited a positive correlation (p < 0.05) with Shewanella and a negative correlation (p < 0.05) with Bradyrhizobium. The relative abundance of Lysobacter and Massilia exhibited a positive correlation with the levels of total soil nitrogen. The utilization of oyster shell soil conditioner on acidic red soil resulted in several positive effects. Firstly, it raised the pH level of the inter-root soil of tomato plants, which is typically acidic. This pH adjustment facilitated the germination of tomato seeds and promoted the growth of seedlings. In addition, the application of oyster shell soil conditioner resulted in changes in the structure of the bacterial community in the inter-root soil, leading to an increase in the relative abundance of Proteobacteria and Bacteroidetes and a decrease in the relative abundance of Acidobacteria. Furthermore, this treatment fostered the proliferation of genera of beneficial bacteria like Massilia, Brevundimonas, and Lysobacter, ultimately enhancing the fertility of the red soil.

AMELIORATION OF CADMIUM STRESS ON TOMATO (LYCOPERSICON ESCULENTUM) BY TRIACONTANOL APPLICATION

Lead (Pb), copper (Cu), zinc (Zn), and cadmium (Cd) tend to build up in the roots of tomato plants and are then taken up by the leaves and fruits, resulting in significant removal from the soil. Plant growth and development are at risk due to the soil's buildup and toxicity of heavy metals (HMs). Cadmium, a hazardous element, inhibits the development and yield of tomatoes. Triacontanol (TRIA) enhances plant development when exposed to low concentrations of Cd, hence mitigating its harmful effects. This work used the exogenous triacontanol (TRIA) application to mitigate the adverse physiological impacts of cadmium (Cd) on tomato plants. The current study investigated tomatoes' physical characteristics, functions, and chemical composition to get a deeper understanding of how Triacontanol responds to stress caused by cadmium. Two experiments were laid out under a Completely Randomized Design (CRD), and three replications under a hydroponic system. In the first experiment, the effects of Cd on tomato were grown hydroponically and exposed to cadmium chloride at five concentration levels (control, 1.5, 03, 06 and 12µmol/L). While in the second experiment tomato grown hydroponically, and cadmium used in the form of CdCl2 at five concentration levels (control, 1.5, 03, 06 and 12µmol/L) with one level of TRIA 10µM/L was be applied to facilitate the Cadmium stress on plant. The Hoagland's solution was used to irrigate the plants after the initial 72 hours of pretreatment in both experiments at 35±1℃; 70-75%RH. Data for tomato plants' morphological, physiological, and biochemical characteristics was recorded. Results revealed that mitigation through triacontanol (TRIA) @ 10µmol/L best affects cadmium stress. It was noted that triacontanol (TRIA) @ 10µmol/L significantly affects tomato plants' morphological, enzymatic, and physiological characteristics at 1.5µmol/L of cadmium stress.

Innovative Protein Gel Treatments to Improve the Quality of Tomato Fruit.

This study aims to establish the effect of biostimulatory protein gels on the quality of tomato. One of the most consumed vegetables, tomato (Lycopersicon esculentum Mill.) is a rich source of healthy constituents. Two variants of protein gels based on bovine gelatin and keratin hydrolysates obtained from leather industry byproducts were used for periodical application on the tomato plant roots in the early stage of vegetation. The gels were characterized by classical physicochemical methods and protein secondary structure was obtained by FTIR band deconvolution. After ripening, tomato was analyzed regarding its content of quality indicators (sugars and organic acids) and antioxidants (lycopene, β-carotene, vitamin C, polyphenols). The results emphasized the positive effects of the protein gels on the quality parameters of tomato fruit. An increase of 10% of dry matter and of 30% (in average) in the total soluble sugars was noted after biostimulant application. Also, lycopene and vitamin C recorded higher values (by 1.44 and 1.29 times, respectively), while β-carotene showed no significant changes. The biostimulant activity of protein gels was correlated with their amino acid composition. Plant biostimulants are considered an ecological alternative to conventional treatments for improving plant growth, and also contributing to reduce the intake of chemical fertilizers.

Diverse plant promoting bacterial species differentially improve tomato plant fitness under water stress

IntroductionFood crops are increasingly susceptible to the challenging impacts of climate change, encompassing both abiotic and biotic stresses, that cause yield losses. Root-associated microorganisms, including plant growth-promoting bacteria (PGPB), can improve plant growth as well as plant tolerance to environmental stresses. The aims of this work were to characterize bacteria isolated from soil and roots of tomato plants grown in open field.MethodsBiochemical and molecular analyses were used to evaluate the PGP potential of the considered strains on tomato plants in controlled conditions, also assessing their effects under a water deficit condition. The isolated strains were classified by 16S gene sequencing and exhibited typical features of PGPB, such as the release of siderophores, the production of proteases, and phosphorous solubilization. Inoculating tomato plants with eleven selected strains led to the identification of potentially interesting strains that increased shoot height and dry weight. Three strains were then selected for the experiment under water deficit in controlled conditions. The tomato plants were monitored from biometric and physiological point of view, and the effect of inoculation at molecular level was verified with a targeted RT-qPCR based approach on genes that play a role under water deficit condition.ResultsResults revealed the PGP potential of different bacterial isolates in tomato plants, both in well-watered and stressed conditions. The used integrated approach allowed to obtain a broader picture of the plant status, from biometric, eco-physiological and molecular point of view. Gene expression analysis showed a different regulation of genes involved in pathways related to abscisic acid, osmoprotectant compounds and heat shock proteins, depending on the treatments. DiscussionOverall, results showed significant changes in tomato plants due to the bacterial inoculation, also under water deficit, that hold promise for future field applications of these bacterial strains, suggesting that a synergistic and complementary interaction between diverse PGPB is an important point to be considered for their exploitation.

Physiological and molecular bases of the boron deficiency response in tomatoes

Abstract Boron is an essential microelement for plant growth. Tomato is one of the most cultivated fruits and vegetables in the world, and boron deficiency severely inhibits its yield and quality. However, the mechanism of tomato in response to boron deficiency remains largely unclear. Here, we investigated the physiological and molecular bases of the boron deficiency response in hydroponically grown tomato seedlings. Boron deficiency repressed the expression of genes associated with nitrogen metabolism, while it induced the expression of genes related to the pentose phosphate pathway, thereby altering carbon flow to provide energy for plants to cope with stress. Boron deficiency increased the accumulation of copper, manganese and iron, thereby maintaining chlorophyll content and photosynthetic efficiency at the early stage of stress. In addition, boron deficiency downregulated the expression of genes involved in cell wall organization and reduced the contents of pectin and cellulose in roots, ultimately retarding root growth. Furthermore, boron deficiency markedly altered phytohormone levels and signaling pathways in roots. The contents of jasmonic acid, jasmonoy1-L-isoleucine, trans-zeatin riboside, abscisic acid, salicylic acid, and SA glucoside were decreased; in contrast, the contents of isopentenyladenine riboside and ethylene precursor 1-aminocyclopropane-1-carboxylic acid were increased in the roots of boron-deficient tomato plants. These results collectively indicate that tomato roots reprogram carbon/nitrogen metabolism, alter cell wall components and modulate phytohormone pathways to survive boron deficiency. This study provides a theoretical basis for further elucidating the adaptive mechanism of tomato in response to boron deficiency.

Salt tolerance of endophytic root bacteria and their effects on seed germination and viability on tomato plants.

Salinity is one of the most brutal environmental factors limiting the productivity of agricultural lands worldwide. It is considered that the salinity may be one of the important reasons for the low yield in Iğdır of the tomato plants, which is medium resistant (3-5 dS.m-1) among vegetables. Eco-friendly techniques such as endophytic root bacteria treatments (ERB) are needed to restore saline soils to agriculture and also to increase the yield of tomatoes. Endophytic bacteria colonizing the inside of plants increase plant growth by various mechanisms and also mitigate the adverse effects of biotic and abiotic stresses on plants. In this study, endophytic bacteria were isolated from the roots of tomato plants exposed to salt stress. Then, these isolates' tolerance levels to different NaCl (0, 0.1, 0.2, 0.4, 0.8M) concentrations and their potential to promote plant growth (PGP) traits were determined. It was recorded that 14.8% of the isolates whose salt tolerance was tested were highly tolerant to NaCl and 18.5% were highly susceptible. The tested ERB isolates exhibited typical PGP characteristics such as siderophore production (4-30mm diameter), phosphate solubilizing activity (6-16mm diameter), and IAA production activity (24.9-171.6µg/ml). Moreover, it was determined that the nitrogen fixation potential is high 55.7% of the isolates tested, and 11.1% low. In addition, the effects of ERB treatments on germination and vigor index in two tomato cultivars under standard and saline conditions in the lab were evaluated. Some ERB isolates in tomato plants under standard and saline conditions increased seed viability, hypocotyl length, root length, and seedling fresh weight, and also accelerated germination.

Ability of arbuscular mycorrhizal to protect tomato (Solanum lycopersicum) seedlings from Fusarium oxysporum

Present experiments were conducted in the microbiology laboratory, Department of Environmental and Agronomic Sciences and in a private nursery in the Tassoust region of Jijel during 2021 and 2022. This study was carried out on the use of strains of arbuscular mycorhizal fungi (Acaulospora sp. and Glomus sp.) as a means to control F. oxysporum effect. After 15 days of inoculation, several measurements of the lengths roots, stem and leaves were noted and symptoms of Fusarium disease were also recorded. The results revealed that F. oxysporum is a pathogen for tomato (Solanum lycopersicum L.) plants (super strain) variety, causing Fusarium disease of this host, which manifests by yellowing, wilting and necrosis of aerial parts, and reduced growth parameters in plants. Therefore, the disease incidence after 15 days of inoculation is estimated at 75 and 50% for (T1 and T3) respectively. In addition, our results revealed that the percentage of incidence was 100 and 25% respectively for T1 and T3 after 22 days. Whereas, the results showed that mycorhizal fungi are associated with the roots of tomato plants. They reduced the incidence rate of Fusarium disease by 50% (T3) and improved the growth of tomato seedlings (Super strain) which manifests itself by a vigorous root system and a very important development of the aerial parts. These results indicate that arbuscular mycorhizal fungi can effectively contribute to the ecological management of soil-borne fungal disease.

Isolation, selection and identification of indigenous bacterial strains having the ability to promote plant growth and antagonise the fungal disease Fusarium oxysporum and root-knot nematode Meloidogyne sp. in Vietnam

Tomato and coffee are very important crops and industrial plants in Vietnam. However, both are severely damaged by the fungus F. oxysporum and the knot root nematode Meloidogyne sp. To date, there are not many biological products that are both effective for prevention and safe for human health and the environment. With the goal of finding beneficial agents for experimental bioproduction in the prevention and suppression of harmful fungal and nematode diseases, this study isolated, selected and identified three indigenous bacterial strains with potential in both plant growth promotion plant and the control of fungal diseases and nematodes harmful to the roots of tomato plants, and ability in plant growth promotion, including strains of Bacillus velezensis TL7, S1 and S2 by sequencing the whole bacterial genome with GenBank codes VEWW00000000, VEWX00000000 and VEWZ00000000, respectively.

Uji Efektivitas Serbuk Daun Kipait (Tithonia difersivolia) Terhadap Serangan Nematoda Puru Akar (Meloidogyne Spp) pada Tanaman Tomat

The tomato plant (Lycopersicum esculentum Mill.) is a horticultural plant that is popular with the public because it has good nutritional content, including vitamin A, vitamin B and vitamin C, which have quite high levels which are good for the body to consume. One of the pests that affects tomato plant production, both quality and quantity, is the attack by root knot nematodes (NPA), namely Meloidogyne spp. This research aims to determine the ability of kipahit leaf powder in several doses to suppress attacks by root knot nematodes (Meloidogyne spp.) on tomato plants (Lycopersicum esculentum Mill.). This research was designed using a one-factor Completely Randomized Design (CRD). The factors tested were the administration of kipahit leaf powder at doses of 25 grams, 50 grams, 75 grams and 100 grams with the control treatment not being given kipahit leaf powder as a comparison. This study had 5 treatments and 4 replications. The research results showed that giving 50 grams of kipahit leaf powder was able to reduce the intensity of root knot attacks and could reduce the nematode population around the roots of tomato plants. and had a significant effect on plant height at 46 and 60 days after transplanting.

Primary structural features, physicochemical and biological properties of two water-soluble polysaccharides extracted from the brown Tunisian seaweed Halopteris scoparia

Marine algae are the most abundant resource in the marine environment and are still a promising source of bioactive compounds including hydrocolloids. This study contributes to the evaluation of the biological and biotechnological potentials of two water soluble polysaccharides, namely alginates (AHS) and fucoidan (FHS), extracted and purified from Halopteris scoparia, an abundant Tunisian brown macroalgae collected in Tunisia (Tabarka region). The total sugars, neutral monosaccharides, uronic acids, proteins, polyphenols, and sulfate groups contents were quantified for both fractions, as well as their functional groups and primary structural features by Fourier transform infrared spectroscopy, ionic and/or gas chromatography and nuclear magnetic resonance analyses. AHS and FHS showed significant anti-inflammatory (IC50 ≈ 1 mg/mL), anticoagulant (e.g., 27–61.7 for the activated partial thromboplastin time), antihyperglycemic (0.1–40 μg/mL) and anti-trypsin (IC50 ≈ 0.3–0.4 mg/mL) effects. FHS and a hydrolyzed fraction showed a very promising potential against herpes viruses (HSV-1) (IC50 < 28 μg/mL). Besides, AHS and two hydrolyzed fractions were able to stimulate the natural defenses of tomato seedlings, assessing their elicitor capacity, by increasing the activity of phenylalanine ammonia-lyase (66–422 %) but also significantly changing the polyphenol content in the leaves (121–243 %) and roots (30–104 %) of tomato plants.

Effect of Biochar and Compost Addition on Mitigating Salinity Stress and Improving Fruit Quality of Tomato

To overcome food security, sustainable strategies for reclamation and the subsequent utilization of salt-affected soils for crop production are needed. The aim of the current study was to evaluate the impacts of compost and biochar addition on the growth and fruit quality of tomato under salinity stress. For this purpose, the soil was spiked with analytical grade sodium chloride to achieve a 6 dS m−1 salinity level for a pot experiment. After 30 days of spiking, the compost (2%) and biochar (2%) were added in selected pots. After the seedling transplant, recommended doses of NPK were added to fulfill nutrient requirements of tomato plants. Plants were harvested after 90 days of seedling transplantation. Results revealed that the salinity caused a significant reduction of 28.4% in SPAD value, 23.5% in Ft, 22.6% in MSI, 12.1% in RWC, 18.3% in Chl. a, 13.7% in Chl. b, and 16.5% in T. Chl. as compared to the un-amended non-saline control in physiological attributes of tomato plants. Similarly, a significant decrease of 26.9–44.1% was obtained in growth attributes of tomato as compared to the non-saline control. However, in saline soil, the addition of biochar and compost (alone or together) demonstrated a significant improvement in plant growth (i.e., up 45%) over the respective un-amended control. Moreover, the combined application of compost and biochar significantly reduced the sodium (Na+) in shoots and roots of tomato plants by 40% and 47%, respectively, over the respective control. Our findings suggest that the combined application of biochar and compost could be useful to reduce salinity, alleviate salinity-induced phytotoxicity, and subsequently improve plant growth and productivity in salt-affected soil.

Identification of a novel dicistro-like virus associated with the roots of tomato plants.

Viruses belonging to the family Dicistroviridae have a monopartite positive-sense single-stranded RNA genome and infect a variety of arthropods. Using high-throughput sequencing, we detected a novel dicistro-like virus, tentatively named "tomato root-associated dicistro-like virus" (TRaDLV), in the roots of tomato plants showing yellow mosaic symptoms on the leaves. The diseased tomato plants were coinfected with multiple plant viruses, and TRaDLV was present in the roots but not in the leaves. The genome of TRaDLV is 8726 nucleotides in length, excluding the poly(A) tail, and contains two open reading frames (ORFs) separated by an intergenic region (IGR). The TRaDLV genome showed characteristics similar to those of dicistroviruses, including the presence of a 3C-like protease domain, repeated amino acid sequences representing multiple copies of viral genome-linked protein (VPg)-like sequences in the ORF1 polyprotein, and a series of stem-loop structures resembling an internal ribosome entry site in the IGR. Phylogenetic analysis revealed that TRaDLV clustered with unclassified dicistro-like viruses from invertebrates or identified in samples of plant-derived material. These findings indicate the existence of a novel dicistro-like virus that may associate with plant roots or a root-inhabiting organism.

The transcription regulator ChpA affects the global transcriptome including quorum sensing-dependent genes in Ralstonia pseudosolanacearum strain OE1-1.

The gram-negative plant-pathogenic β-proteobacterium Ralstonia pseudosolanacearum strain OE1-1 produces methyl 3-hydroxymyristate as a quorum sensing (QS) signal through methyltransferase PhcB and senses the chemical via the sensor histidine kinase PhcS. This leads to activation of the LysR family transcription regulator PhcA, which regulates the genes (QS-dependent genes) responsible for QS-dependent phenotypes, including virulence. The transcription regulator ChpA, which possesses a response regulator receiver domain and also a hybrid sensor histidine kinase/response regulator phosphore-acceptor domain but lacks a DNA-binding domain, is reportedly involved in QS-dependent biofilm formation and virulence of R. pseudosolanacearum strain GMI1000. To explore the function of ChpA in QS of OE1-1, we generated a chpA-deletion mutant (ΔchpA) and revealed that the chpA deletion leads to significantly altered QS-dependent phenotypes. Furthermore, ΔchpA exhibited a loss in its infectivity in xylem vessels of tomato plant roots, losing virulence on tomato plants, similar to the phcA-deletion mutant (ΔphcA). Transcriptome analysis showed that the transcript levels of phcB, phcQ, phcR, and phcA in ΔchpA were comparable to those in OE1-1. However, the transcript levels of 89.9% and 88.9% of positively and negatively QS-dependent genes, respectively, were significantly altered in ΔchpA compared with OE1-1. Furthermore, the transcript levels of these genes in ΔchpA were positively correlated with those in ΔphcA. Together, our results suggest that ChpA is involved in the regulation of these QS-dependent genes, thereby contributing to the behaviour in host plant roots and virulence of OE1-1.

2,4-dichlorophenoxyacetic acid detoxification occurs primarily in tomato leaves by the glutathione S-transferase phi members 4 and 5

In the last 60 years, auxinic herbicides like 2,4-dichlorophenoxyacetic acid (2,4-D) have been among the widest and successful herbicides used in agriculture because it is a selective herbicide that kills dicots and mimics the natural plant phytohormone indol-3-acetic acid (IAA) at the molecular level. In spite of industry attempts to reformulate 2,4-D-based herbicides and reduce their off-target movement, damage has been reported on sensitive plants, like tomato, at low ratesdi. Therefore, it is important to study the responses of such species to such conditions so that yield losses can be avoided or, at least, reduced. It is known that ethylene, abscisic acid (ABA) and reactive oxygen species (ROS) play a central role in 2,4-D toxicity, leading to numerous unbeneficial changes in plant tissues. Yet, how glutathione-related defense- and/or stress-related genes’ expressions are affected needs to be more studied. In this study, tomato plants (Solanum lycopersicum L.) were used to determine the expression and participation of the different GST phi class gene family members, plus the plans’ antioxidant system, in response to 2,4-D. When tomato plants were root-treated with 2.26 mM 2,4-D for 48 h, H2O2 and O2•− levels increased in shoots. Contrarily, in roots, 2,4-D did not provoke clear symptoms of oxidative stress, as lipid peroxidation, H2O2 and O2•− levels decreased. Despite the difference in ROS levels observed in both organs, the exposure of tomato plants to 2,4-D lead to the activation of key antioxidant enzymes in both organs, apart from superoxide dismutase (SOD), whose activity increased only in roots, while ascorbate peroxidase (APX) and catalase (CAT) activities increased in both. Also, tomato plants responded to 2.26 mM 2,4-D by increasing Ascorbate (AsA) levels in both organs while an increase in Glutathione (GSH) was only observed in shoots. The herbicide increased both the synthesis and the regeneration of GSH, as well as its usage to conjugate 2,4-D, as shoot γ-glutamyl-cysteinyl synthetase (γ-ECS), glutathione reductase (GR) and glutathione S-transferase (GST) activities increased. Shoot GST increased activity was due to an increased expression of SlGSTF4 and SlGSTF5, while no SlGSTFs increased their expression in roots. Shoots and roots of tomato plants were differentially affected by 2.26 mM 2,4-D, with 2,4-D detoxification occurring predominantly in leaves, with the specific participation of the GST phi class members SlGSTF4 and SlGSTF5. Also, this study reinforces the notion that the cultivation of tomato in 2,4-D-contaminated soils may result in yield reduction.

SlIAA23-SlARF6 module controls arbuscular mycorrhizal symbiosis by regulating strigolactone biosynthesis in tomato.

Auxins are a class of phytohormones with roles involved in the establishment and the maintenance of the arbuscular mycorrhizal symbiosis (AMS). AUXIN RESPONSE FACTORs (ARFs) and AUXIN/INDOLE-ACETIC ACIDs (AUX/IAAs), as two transcription factors of the auxin signaling pathway, co-regulate the transcription of auxin response genes. However, the inter-relation and regulatory mechanism of ARFs and AUX/IAAs in regulating AMS are still unclear. In this study, we found that the content of auxin in tomato roots increased sharply and revealed the importance of the auxin signaling pathway in the early stage of AMS. Notably, SlARF6 was found to play a negative role in AMF colonization. Silencing SlARF6 significantly increased the expression of AM-marker genes, as well as AMF-induced phosphorus uptake. SlIAA23 could interact with SlARF6 in vivo and in vitro, and promoted the AMS and phosphorus uptake. Interestingly, SlARF6 and SlIAA23 played a contrary role in strigolactone (SL) synthesis and accumulation in AMF-colonized roots of tomato plants. SlARF6 could directly bind to the AuxRE motif of the SlCCD8 promoter and inhibited its transcription, however, this effect was attenuated by SlIAA23 through interaction with SlARF6. Our results suggest that SlIAA23-SlARF6 co-regulated tomato-AMS via an SL-dependent pathway, thus affecting phosphorus uptake in tomato plants. This article is protected by copyright. All rights reserved.