Abstract The c-Jun-N-terminal kinases (JNKs), are activated by stress, growth factors and cytokines, and are encoded by three separate genes (JNK 1, 2, and 3), with 10 total isoforms. Our published data has demonstrated that off-target effects on JNK signaling by BRAF inhibitors (BRAFi) are important for the induction of cutaneous squamous carcinoma (cuSCC). Overexpression of JNK2, has been found to promote transformation of keratinocytes, also suggesting an important role of JNK signaling pathway in promoting tumor development. However, it is still unclear how different JNK isoforms, especially ubiquitously expressed JNK1 and JNK2, really function in skin cancer. To delineate the specific roles of JNK1 and JNK2, we expressed C116S mutants, which rendered them insensitive to the pan-JNK inhibitor JNK-IN-8, without affecting their activity. Wild-type and mutant JNK1 and JNK2 were transduced into cuSCC (SRB1) and keratinocyte (HaCaT) cell lines and application of JNK-IN-8 enabled chemical-genetic dissection of JNK1 and JNK2 activity. JNK-IN-8 significantly attenuated UV-induced apoptosis by 80-90% in SRB1 and HaCat cells overexpressing WT JNK1, WT JNK2 or C116S JNK2 mutant compared to vehicle control while having only a slight effect (0-10%) on cells overexpressing C116S JNK1 mutant, suggesting JNK1 is the key player in UV- induced apoptosis. This difference served as the basis for a gene expression profiling study in which we identified differentially expressed genes regulated by JNK1 vs. JNK2. We also showed that the Leucine-zipper and sterile-α motif kinase (ZAK), which is a MAP3K, is an important upstream activator of JNK-mediated UV-induced apoptosis in skin cancer. To probe how ZAK activates JNK signaling, we knocked down ZAK in SRB1 and HaCaT cells with lentiviral shRNA. Following UV exposure, we found that both JNK1 and JNK2 activation occurred with JNK1 activity peaking within 6 hours and JNK2 activity sustained over 24 hours. In ZAK knockdown cells, JNK1 activation was selectively suppressed, suggesting that ZAK preferentially activates JNK1 in this context. In conclusion, our results indicate that JNK signaling pathway, part of which is regulated by ZAK, plays a critical role in skin cancer. JNK1 and JNK2 exert opposing influences that center on the regulation of apoptosis and cell proliferation in skin cancer. Citation Format: Lili Du, Tinghu Zhang, Tamer Kaoud, Nathanael Gray, Kevin Dalby, Kenneth Y. Tsai. Distinct roles of c-Jun N-terminal kinase (JNK) isoforms in skin cancer. [abstract]. In: Proceedings of the 106th Annual Meeting of the American Association for Cancer Research; 2015 Apr 18-22; Philadelphia, PA. Philadelphia (PA): AACR; Cancer Res 2015;75(15 Suppl):Abstract nr 1941. doi:10.1158/1538-7445.AM2015-1941