Role In Methanogenesis Research Articles

Role of methanogenesis and methanotrophy in CH4 fluxes from rice paddies under elevated CO2 concentration and elevated temperature

The differential responses of methanogenesis and methanotrophy to elevated carbon dioxide concentrations ([CO2]) (e[CO2]) and elevated temperature ([T]) (e[T]) may lead to dramatic changes in the response of CH4 emissions from rice paddies to global warming. In this study, we systematically investigated the responses and mechanisms of CH4 flux from rice paddies to e[CO2] and e[T] based on the production and oxidation of CH4. The CH4 flux, soil properties, and soil methanogenesis and methanotrophy were observed under CK (ambient [CO2] + ambient [T]), EC (e[CO2] by 200 μmol mol−1 + ambient [T]), ET (ambient [CO2] + e[T] by 2 °C), and ECT (e[CO2] by 200 μmol mol−1 + e[T] by 2 °C) treatments. The results revealed that EC, ET, and ECT significantly increased the cumulative amount of CH4 (CAC) in the rice paddies by 10.63, 15.20, and 11.77 kg ha−1, respectively, compared with CK. ECT increased the CAC in the rice paddies by 1.14 kg ha−1 compared with EC. Moreover, EC, ET, and ECT significantly enhanced the methane production potential (MPP) and methane oxidation potential (MOP) and tended to increase the mcrA gene abundance of the methanogens. EC tended to prompt the pmoA gene abundance of the methanotrophs, but the effect of ET on the pmoA gene abundance was less consistent across the growth stages. ECT significantly decreased the relative abundances of Methanosarcina and Methylocystis (Type II) by 4.9 % and 14.2 %, respectively, while it increased the relative abundance of Methylosarcina (Type I) by 24.0 % compared with CK. Overall, the increased MPP/MOP, mcrA/pmoA, and microbial biomass carbon under climate change increased the CH4 flux from the rice paddies. The contribution of e[CO2] to the CH4 flux was significantly enhanced by e[T], which could further exacerbate the risk of global climate change induced by e[CO2].

Understanding the Role of Free-Living Bacteria in the Gut of the Lower Termite Coptotermes gestroi Based on Metagenomic DNA Analysis.

Termites' digestive systems, particularly in lower termites with the presence of protozoa, are unique ecological niches that shelter a diverse microbiota with a variety of functions for the host and the environment. In 2012, the metagenomic DNA (5.4 Gb) of the prokaryotes that freely live in the gut of the lower termite Coptotermes gestroi were sequenced. A total of 125,431 genes were predicted and analyzed in order to mine lignocellulolytic genes. however, the overall picture of the structure, diversity, and function of the prokaryotic gut microbiota was not investigated. In the present study, these 125,431 genes were taxonomically classified by MEGAN and functionally annotated by the Kyoto Encyclopedia of Genes and Genomes (KEGG) and by the Carbohydrate-Active enZYmes (CAZy) and HMMER databases. As a result, 95,751 bacterial genes were classified into 35 phyla. The structure of the bacteria, typified by a high ratio of Firmicutes to Bacterioidetes, was distinct from the structure of the entirety of the bacteria in the lower or higher termites' guts. The archaea (533 genes) were distributed into 4 phyla, 10 classes, 15 orders, 21 families, 47 genera, and 61 species. Although freely living in the guts, the prokaryotic community was formed, developed, and adapted to exhibit unique interactions in order to perform mutual roles of benefit to their hosts. Methanobacteriales, accounting for 61% of the archaea symbionts, seem to play an important role in methanogenesis. Concomitantly, bacterial methanotrophs in the gut utilize methane and combine with other bacterial groups, including potential lignocellulolytic degraders, acetogens, sulfur bacteria, and nitrogen-recycling bacteria, to efficiently convert wood with little nitrogen into acetates via certain pathway modules specified by prokaryotes that freely live in the gut. This forms an important energy source for the termites. Furthermore, bacteria carry 2223 genes involved in the biosynthesis of 17 antibiotic groups. The gut bacteria also possess genes for the degradation of 18 toxic aromatic compounds, of which four are commercial pesticides against termites commonly used for the preservation of wooden constructions. Eight of the eighteen pathways were the first to be reported from the termite gut. Overall, this study sheds light on the roles of the freely living bacteria and archaea in the C. gestroi gut, providing evidence that the gut microbiome acts as the second host genome, contributing both nutrients and immunity to support the host's existence, growth, and development.

The Action Potential of Antioxidant Grape Seed Proanthocyanidin as a Rumen Modifier to Mitigate Rumen Methanogenesis In Vitro

Grape seed proanthocyanidin (GSP) contains polyphenolic bioflavonoids ubiquitously found in the lignified portions of grape seeds from the winery and distillery industries, as an antioxidant. To explore its potential as a rumen modifier in methanogenesis inhibition, a 2 × 5 factorial experiment was conducted to determine the effect of GSP at 0, 15, 30, 60 and 120 mg/g of substrate on the rumen fermentation and methanogenesis of two representative total mixed rations (HY, a diet for high-yield (>2 kg/d) lactating cows, and LY, a diet for low-yield (<25 kg/d) lactating cows). By using the MIXED procedure, after a 48 h in vitro rumen incubation, increasing the GSP addition linearly decreased the in vitro dry matter digestion (IVDMD) and slowed down the rates of ration fermentation (RmaxS, g/h) and kinetic gas production (RmaxG, mL/h), with the decreases being more pronounced in the LY than HY group (p < 0.05). The GSP addition decreased hydrogen recovery (2Hrec) and altered the fermentation gas composition. The molar CH4 proportion was significantly reduced with both 60 and 120 mg GSP addition (p < 0.01). The total volatile fatty acid production was linearly decreased with the increasing GSP addition (p < 0.01). In addition, the GSP addition significantly decreased the ratio of methanogens to total bacteria (p < 0.05), and the reduction was notably greater in the HY than in the LY substrate (45.3% vs. 15.2% decrease), although the diversity of rumen methanogenic archaea was not affected in either the HY or the LY group. Bioinformatic analysis illustrated that the rumen archaeal community was predominated by a Methanobrevibacter genus (>72.5%), followed by Methanomassiliicoccus (>20.9%) and Methanosphaera (>1.0%). Methanobrevibacter could play an important role in methanogenesis in the presence of GSP, though it is usually considered to be the main hydrogenotrophic methanogen. In brief, the GSP addition presented high potential as a rumen modifier to mitigate methanogenesis by decreasing the ratio of methanogens to total bacteria. Methanobrevibacter could play an important role in methanogenesis in the presence of GSP. However, a relatively low administration level of GSP should be taken into consideration in order to obtain its inhibitory effect on CH4 emission, with a minimal negative effect on rumen digestion and fermentation.

Host Genome-Metagenome Analyses Using Combinatorial Network Methods Reveal Key Metagenomic and Host Genetic Features for Methane Emission and Feed Efficiency in Cattle.

Cattle production is one of the key contributors to global warming due to methane emission, which is a by-product of converting feed stuff into milk and meat for human consumption. Rumen hosts numerous microbial communities that are involved in the digestive process, leading to notable amounts of methane emission. The key factors underlying differences in methane emission between individual animals are due to, among other factors, both specific enrichments of certain microbial communities and host genetic factors that influence the microbial abundances. The detection of such factors involves various biostatistical and bioinformatics methods. In this study, our main objective was to reanalyze a publicly available data set using our proprietary Synomics Insights platform that is based on novel combinatorial network and machine learning methods to detect key metagenomic and host genetic features for methane emission and residual feed intake (RFI) in dairy cattle. The other objective was to compare the results with publicly available standard tools, such as those found in the microbiome bioinformatics platform QIIME2 and classic GWAS analysis. The data set used was publicly available and comprised 1,016 dairy cows with 16S short read sequencing data from two dairy cow breeds: Holstein and Nordic Reds. Host genomic data consisted of both 50 k and 150 k SNP arrays. Although several traits were analyzed by the original authors, here, we considered only methane emission as key phenotype for associating microbial communities and host genetic factors. The Synomics Insights platform is based on combinatorial methods that can identify taxa that are differentially abundant between animals showing high or low methane emission or RFI. Focusing exclusively on enriched taxa, for methane emission, the study identified 26 order-level taxa that combinatorial networks reported as significantly enriched either in high or low emitters. Additionally, a Z-test on proportions found 21/26 (81%) of these taxa were differentially enriched between high and low emitters (p value <.05). In particular, the phylum of Proteobacteria and the order Desulfovibrionales were found enriched in high emitters while the order Veillonellales was found to be more abundant in low emitters as previously reported for cattle (Wallace et al., 2015). In comparison, using the publicly available tool ANCOM only the order Methanosarcinales could be identified as differentially abundant between the two groups. We also investigated a link between host genome and rumen microbiome by applying our Synomics Insights platform and comparing it with an industry standard GWAS method. This resulted in the identification of genetic determinants in cows that are associated with changes in heritable components of the rumen microbiome. Only four key SNPs were found by both our platform and GWAS, whereas the Synomics Insights platform identified 1,290 significant SNPs that were not found by GWAS. Gene Ontology (GO) analysis found transcription factor as the dominant biological function. We estimated heritability of a core 73 taxa from the original set of 150 core order-level taxonomies and showed that some species are medium to highly heritable (0.25–0.62), paving the way for selective breeding of animals with desirable core microbiome characteristics. We identified a set of 113 key SNPs associated with >90% of these core heritable taxonomies. Finally, we have characterized a small set (<10) of SNPs strongly associated with key heritable bacterial orders with known role in methanogenesis, such as Desulfobacterales and Methanobacteriales.

Extraction of Cofactor F&lt;sub&gt;420&lt;/sub&gt; for Analysis of Polyglutamate Tail Length from Methanogenic Pure Cultures and Environmental Samples

The cofactor F420 plays a central role as a hydride carrier in the primary and secondary metabolism of many bacterial and archaeal taxa. The cofactor is best known for its role in methanogenesis, where it facilitates thermodynamically difficult reactions. As the polyglutamate tail varies in length between different organisms, length profile analyses might be a powerful tool for distinguishing and characterizing different groups and pathways in various habitats. Here, the protocol describes the extraction and optimization of cofactor F420 detection by applying solid-phase extraction combined with high-performance liquid chromatography analysis independent of cultural or molecular biological approaches. The method was applied to gain additional information on the expression of cofactor F420 from microbial communities in soils, anaerobic sludge, and pure cultures and was evaluated by spiking experiments. Thereby, the study succeeded in generating different F420 tail-length profiles for hydrogenotrophic and acetoclastic methanogens in controlled methanogenic pure cultures as well as from environmental samples such as anaerobic digester sludge and soils.

Disentangling the syntrophic electron transfer mechanisms of Candidatus geobacter eutrophica through electrochemical stimulation and machine learning

Interspecies hydrogen transfer (IHT) and direct interspecies electron transfer (DIET) are two syntrophy models for methanogenesis. Their relative importance in methanogenic environments is still unclear. Our recent discovery of a novel species Candidatus Geobacter eutrophica with the genetic potential of IHT and DIET may serve as a model species to address this knowledge gap. To experimentally demonstrate its DIET ability, we performed electrochemical enrichment of Ca. G. eutrophica-dominating communities under 0 and 0.4 V vs. Ag/AgCl based on the presumption that DIET and extracellular electron transfer (EET) share similar metabolic pathways. After three batches of enrichment, Geobacter OTU650, which was phylogenetically close to Ca. G. eutrophica, was outcompeted in the control but remained abundant and active under electrochemical stimulation, indicating Ca. G. eutrophica’s EET ability. The high-quality draft genome further showed high phylogenomic similarity with Ca. G. eutrophica, and the genes encoding outer membrane cytochromes and enzymes for hydrogen metabolism were actively expressed. A Bayesian network was trained with the genes encoding enzymes for alcohol metabolism, hydrogen metabolism, EET, and methanogenesis from dominant fermentative bacteria, Geobacter, and Methanobacterium. Methane production could not be accurately predicted when the genes for IHT were in silico knocked out, inferring its more important role in methanogenesis. The genomics-enabled machine learning modeling approach can provide predictive insights into the importance of IHT and DIET.

Hidden Processes During Seasonal Isolation of a High-Altitude Watershed

Biogeochemical processes capable of altering global carbon systems occur frequently in Earth’s Critical Zone–the area spanning from vegetation canopy to saturated bedrock–yet many of these phenomena are difficult to detect. Observation of these processes is limited by the seasonal inaccessibility of remote ecosystems, such as those in mountainous, snow- and ice-dominated areas. This isolation leads to a distinct gap in biogeochemical knowledge that ultimately affects the accuracy and confidence with which these ecosystems can be computationally modeled for the purpose of projecting change under different climate scenarios. To examine a high-altitude, headwater ecosystem’s role in methanogenesis, sulfate reduction, and groundwater-surface water exchange, water samples were continuously collected from the river and hyporheic zones (HZ) during winter isolation in the East River (ER), CO watershed. Measurements of continuously collected ER surface water revealed up to 50 μM levels of dissolved methane in July through September, while samples from 12 cm deep in the hyporheic zone at the same location showed a spring to early summer peak in methane with a strong biogenic signature (&amp;lt;65 μM, δ13C-CH4, −60.76‰) before declining. Continuously collected δ18O-H2O and δ2H-H2O isotopes from the water column exhibited similar patterns to discrete measurements, while samples 12 cm deep in the hyporheic zone experienced distinct fluctuations in δ18O-H2O, alluding to significant groundwater interactions. Continuously collected microbial communities in the river in the late fall and early winter revealed diverse populations that reflect the taxonomic composition of ecologically similar river systems, including taxa indicative of methane cycling in this system. These measurements captured several biogeochemical components of the high-altitude watershed in response to seasonality, strengthening our understanding of these systems during the winter months.

Anaerobic co-digester microbiome during food waste valorization reveals Methanosaeta mediated methanogenesis with improved carbohydrate and lipid metabolism

This study determines the optimum food waste (FW) loading in an anaerobic digester for methane production. Interrelation between the degradation mechanism and microbial community composition was assessed through in-depth metabolic pathway analysis and gene quantification. Higher methane production and short lag phase were observed in the FW reactors with low substrate loadings (<4% v/v) while extended lag phase and incomplete substrate utilization were observed in the reactors fed with higher substrates (>6% v/v). The long-chain fatty acids (LCFAs) degradation was influenced by initial FW loading, and up to 99% LCFA degradation occurred at 4% FW reactor. The addition of 8 to 10% FW substrate inhibited methanogenesis due to the accumulation of volatile fatty acids (VFA) and low LCFA degradation. Under optimal conditions of substrate loading, Methanosaeta and Methanosarcina were abundant, indicating their role in methanogenesis and syntrophic acetogenesis, along with enhanced metabolic pathways specific for carbohydrate and lipid metabolism.

Functional diversity of prokaryotic HdrA(BC) modules: Role in flavin-based electron bifurcation processes and beyond

In methanogenic archaea, the archetypical complex of heterodisulfide reductase (HdrABC) and hydrogenase (MvhAGD) couples the endergonic reduction of CO2 by H2 to the exergonic reduction of the CoB-S-S-CoM heterodisulfide by H2 via flavin-based electron bifurcation. Presently known enzymes containing HdrA(BC)-like components play key roles in methanogenesis, acetogenesis, respiratory sulfate reduction, lithotrophic reduced sulfur compound oxidation, aromatic compound degradation, fermentations, and probably many further processes. This functional diversity is achieved by a modular architecture of HdrA(BC) enzymes, where a big variety of electron input/output modules may be connected either directly or via adaptor modules to the HdrA(BC) components. Many, but not all HdrA(BC) complexes are proposed to catalyse a flavin-based electron bifurcation/confurcation. Despite the availability of HdrA(BC) crystal structures, fundamental questions of electron transfer and energy coupling processes remain. Here, we address the common properties and functional diversity of HdrA(BC) core modules integrated into electron-transfer machineries of outstanding complexity.

Carbon mass balance, isotopic tracers of biogenic methane, and the role of acetate in coal beds: Powder River Basin (USA)

A multi-isotope (C, H, O) investigation of biogenic gas (δ13C−CH4, δ13C−CO2, δD−CH4) and coal bed waters (δD, δ18O, δ13C-DIC, δ13C-acetate) was conducted along a ∼25-km basinward sampling transect in the Powder River Basin (PRB) in Wyoming and Montana (USA) to address inconsistencies among isotope fingerprinting techniques and to apply mass balance isotope modeling to biogenic coalbed methane (CBM). Results include the first published compound-specific δ13C-acetate values from a natural biogenic CBM system, providing new constraints on acetate’s role in biogenic CH4 generation. Coal bed water chemistry is anoxic and dominated by Na+ and HCO3−, with high alkalinity concentrations (14.8–33.0meq/L). The deep basin interior environment contains sulfate-free, Na+−HCO3−-dominated waters exhibiting signs of methanogenesis. CH4 and CO2 generally become 13C-enriched from the shallow basin edge to the deep basin interior (δ13C−CH4 −78.2 to −56.2‰ and δ13C−CO2 -24.7 to 4.7‰). Also, compound-specific δ13C-acetate is more positive in the basin interior compared to the basin edge setting (range −34.3 to −15.1‰). Using a steady-state mass balance isotope model, the observed variations in δ13C-CH4 and δ13C-CO2 can be explained in terms of the favorability of methanogenesis (fCH4) relative to heterotrophic bacterially-mediated non-methanogenic pathways, such as bacterial sulfate reduction, which compete with methanogenesis for substrates. At the basin interior, fCH4 exceeds 0.4, approaching its inferred limiting value hypothesized from the oxidation state of low-molecular weight compounds detected in PRB formation waters. Therefore, methanogenesis is likely a dominant biogeochemical pathway consuming substrates in the deeper coal beds. The basinward shift toward 13C-enriched acetate broadly indicates linkage between acetate, CH4, and CO2, and likely records acetate synthesis effects modified by methanogenic fractionation. These results suggest that acetate plays a role in methanogenesis in PRB coal beds (not necessarily a dominant role), while other C isotope and microbial evidence suggests that hydrogenotrophic methanogenesis is also a significant methane-producing pathway. The results of this study broadly suggest multiple viable methanogenic pathways and C cycling that affects acetate, a more complex view of coal bed geochemistry than implied by traditional C and H isotope fingerprinting of accumulated products (CH4, CO2) and coexisting water.

NanoFe3O4 accelerates methanogenic straw degradation in paddy soil enrichments

Methanogenesis is crucial in the carbon cycle, and conductive iron oxide minerals play an important role in methanogenesis in anoxic environments. The influence of iron oxides is ubiquitous, but the strength and nature of iron oxides effects are believed to vary in response to environmental conditions, especially the soil iron concentration. We evaluated the influence of conductive nanoFe3O4 on straw degradation in high-iron (HR) and low-iron (LR) paddy soil enrichments, as well as the corresponding responses of related microorganisms. Under conductive nanoFe3O4 amendment, methane production and straw degradation increased by 184%–285% and 7.8%–12.7%, respectively, in the two soil enrichments. The increase apparently coincided with increased interspecies interactions within the microorganismal community, especially enhanced syntrophic cooperation among fermenting bacteria, syntrophic bacteria and methanogenic archaea, and facilitated interspecies electron transfer, which improved carbon conversion and alleviated end-product inhibition. The methanogenic archaeal community also exhibited changes with nanoFe3O4 amendment, and the relative abundance of Methanosarcina increased. Pairwise comparisons revealed that although methanogenic straw degradation was higher in HR soil than in LR soil, the enhancement induced by the nanoFe3O4 amendment showed to a larger degree and the microbial responses were more distinct in LR soil than in HR soil. The abundances of Geobacter and Methanosarcina greatly increased, and the microbial community shifted towards a composition similar to that in HR soil. This work indicates that iron oxides facilitate the methanogenic degradation of rice straw and that the indigenous iron content significantly influences the microbial community composition. This study provides a technique for agricultural residue degradation and has clear implications for our understanding of soil C-Fe biogeochemical coupling.

Production pathways for CH4 and CO2 in sediments of two freshwater ecosystems in south-eastern Poland.

This paper presents the results of research into pathways leading to the production of methane (CH4) and carbon dioxide (CO2) in sediments of two eutrophic reservoirs (Maziarnia and Nielisz), located in south-eastern Poland. In seeking to identify the pathways in question, use was made of analysis of stable carbon isotopes in CH4 and CO2 dissolved in pore water. This determined that CH4 is mainly produced through acetate fermentation, though the hydrogenotrophic methanogenic process may also be of importance, especially in deeper layers of sediments. Both the presence of autochthonous organic matter and increased pH values are shown to favour acetate fermentation. In turn, methanogenesis in sediments is assessed as capable of accounting for the generation of a considerable amount of CO2. Indeed, the role of methanogenesis in CO2 production is increasingly important further down in the layers of sediment, where allochthonous organic matter is predominant.

The methanogenic redox cofactor F420 is widely synthesized by aerobic soil bacteria

F420 is a low-potential redox cofactor that mediates the transformations of a wide range of complex organic compounds. Considered one of the rarest cofactors in biology, F420 is best known for its role in methanogenesis and has only been chemically identified in two phyla to date, the Euryarchaeota and Actinobacteria. In this work, we show that this cofactor is more widely distributed than previously reported. We detected the genes encoding all five known F420 biosynthesis enzymes (cofC, cofD, cofE, cofG and cofH) in at least 653 bacterial and 173 archaeal species, including members of the dominant soil phyla Proteobacteria, Chloroflexi and Firmicutes. Metagenome datamining validated that these genes were disproportionately abundant in aerated soils compared with other ecosystems. We confirmed through high-performance liquid chromatography analysis that aerobically grown stationary-phase cultures of three bacterial species, Paracoccus denitrificans, Oligotropha carboxidovorans and Thermomicrobium roseum, synthesized F420, with oligoglutamate sidechains of different lengths. To understand the evolution of F420 biosynthesis, we also analyzed the distribution, phylogeny and genetic organization of the cof genes. Our data suggest that although the Fo precursor to F420 originated in methanogens, F420 itself was first synthesized in an ancestral actinobacterium. F420 biosynthesis genes were then disseminated horizontally to archaea and other bacteria. Together, our findings suggest that the cofactor is more significant in aerobic bacterial metabolism and soil ecosystem composition than previously thought. The cofactor may confer several competitive advantages for aerobic soil bacteria by mediating their central metabolic processes and broadening the range of organic compounds they can synthesize, detoxify and mineralize.

Recent Advances in Factors and Methods for Stimulation of Biomethane Production.

The role of methanogenesis in the global carbon cycle is very important for recycle of renewable biomass which, has the potential for contribution to independence from fossil fuels. Anaerobic microbes comprised of fermentative and acetogenic species decompose the complex biomass to hydrogen, formate and, acetate that are further metabolized to methane by methanogens. A general review of biogenic production of methane and methanogenic diversity involved is presented. This review gives an overview of recent patents on methane production and focuses mainly on different methods, systems and, microbial methanogenic community involved in anaerobic digestion that can be used for improved understanding of the microbial community function and relationships in methanogenesis.

Organic Matter Decomposition in Bottom Sediments of the Reservoirs of the Volga and Kama Rivers. Role of Methanogenesis

Organic Matter Decomposition in Bottom Sediments of the Reservoirs of the Volga and Kama Rivers. Role of Methanogenesis

Discovery of a novel rumen methanogen in the anaerobic fungal culture and its distribution in the rumen as revealed by real-time PCR.

BackgroundThe novel archaea belonging to Rumen Cluster C (RCC), which may play an important role in methane production in the rumen have received increased attention. However, the present information on RCC in the rumen is limited by the unsuccessful isolation of axenic pure RCC from the rumen. In the present study, RCC grown in anaerobic fungal subcultures was identified by the molecular and culture methods.ResultsA novel RCC species existing in the fungal subcultures was identified and demonstrated by the 16S rRNA gene clone library. Interestingly, the novel RCC species survived in the fungal cultures over all the subculture transferring, even in the 62nd subculture, in contrast to the other methanogens, which disappeared during subcultures. Further work showed that subculture transfer frequency significantly affected the relative abundance of the novel RCC species in the fungal subcultures. The five-day and seven-day transfer frequencies increased the relative abundance of the RCC species (P<0.05). In addition, quantitative real-time PCR revealed that high concentrate diets did not affect the abundance of archaea, but numerically reduced the abundance of the novel RCC species in the rumen. In addition, the relative abundance of the RCC species was numerically higher in the rumen liquid fraction than in the rumen epithelium and solid fractions. Finally, a purified fungal culture containing the RCC species was successfully obtained. PCR and sequencing analysis showed that the novel RCC species contained a mcrA gene, which is known to play a crucial role in methanogenesis, and thus could be identified as a methanogen.ConclusionIn this study, a novel RCC species was identified as a methanogen and closely associated with anaerobic fungi. This novel approach by using co-culture with anaerobic fungi may provide a feasible way to culture and investigate not yet identified methanogens.

Wetland an Economical Solution for Wastewater Rehabilitation

Wetland system relies on renewable energy sources such as solar and kinetic energy and wetland plants and micro-organisms, which are the active agents in the treatment process. Wetlands can remove inorganic nutrients, heavy metals, dissolved organic carbon, particulate organic matter, and suspended solids from the water column and sediments, as well as play a key role in supporting food webs and influencing global climate change through their role in methanogenesis. Using constructed wetlands, wastewater can be treated at lower costs than other treatment options, with low-technology methods where no new or complex technological tools are needed. The system relies on renewable energy sources such as solar and kinetic energy and wetland plants and micro-organisms, which are the active agents in the treatment process. There are inherent limitations to the effectiveness of constructed wetland treatment system for wastewater treatment. Nevertheless, wetland treatment is often the best choice for treatment or pre-treatment of wastewater because of its low maintenance cost and simplicity of operation, high efficiency. Moreover, wetland techniques enhance the aesthetic value of the local and conserve the fauna and flora.

A pyrosequencing-based metagenomic study of methane-producing microbial community in solid-state biogas reactor.

BackgroundA solid-state anaerobic digestion method is used to produce biogas from various solid wastes in China but the efficiency of methane production requires constant improvement. The diversity and abundance of relevant microorganisms play important roles in methanogenesis of biomass. The next-generation high-throughput pyrosequencing platform (Roche/454 GS FLX Titanium) provides a powerful tool for the discovery of novel microbes within the biogas-generating microbial communities.ResultsTo improve the power of our metagenomic analysis, we first evaluated five different protocols for extracting total DNA from biogas-producing mesophilic solid-state fermentation materials and then chose two high-quality protocols for a full-scale analysis. The characterization of both sequencing reads and assembled contigs revealed that the most prevalent microbes of the fermentation materials are derived from Clostridiales (Firmicutes), which contribute to degrading both protein and cellulose. Other important bacterial species for decomposing fat and carbohydrate are Bacilli, Gammaproteobacteria, and Bacteroidetes (belonging to Firmicutes, Proteobacteria, and Bacteroidetes, respectively). The dominant bacterial species are from six genera: Clostridium, Aminobacterium, Psychrobacter, Anaerococcus, Syntrophomonas, and Bacteroides. Among them, abundant Psychrobacter species, which produce low temperature-adaptive lipases, and Anaerococcus species, which have weak fermentation capabilities, were identified for the first time in biogas fermentation. Archaea, represented by genera Methanosarcina, Methanosaeta and Methanoculleus of Euryarchaeota, constitute only a small fraction of the entire microbial community. The most abundant archaeal species include Methanosarcina barkeri fusaro, Methanoculleus marisnigri JR1, and Methanosaeta theromphila, and all are involved in both acetotrophic and hydrogenotrophic methanogenesis.ConclusionsThe identification of new bacterial genera and species involved in biogas production provides insights into novel designs of solid-state fermentation under mesophilic or low-temperature conditions.

Cultivation-independent analysis of archaeal and bacterial communities of the formation water in an Indian coal bed to enhance biotransformation of coal into methane

Biogenic origin of the significant proportion of coal bed methane has indicated the role of microbial communities in methanogenesis. By using cultivation-independent approach, we have analysed the archaeal and bacterial community present in the formation water of an Indian coal bed at 600-700m depth to understand their role in methanogenesis. Presence of methanogens in the formation water was inferred by epifluorescence microscopy and PCR amplification of mcrA gene. Archaeal 16S rRNA gene clone library from the formation water metagenome was dominated by methanogens showing similarity to Methanobacterium, Methanothermobacter and Methanolinea whereas the clones of bacterial 16S rRNA gene library were closely related to Azonexus, Azospira, Dechloromonas and Thauera. Thus, microbial community of the formation water consisted of predominantly hydrogenotrophic methanogens and the proteobacteria capable of nitrogen fixation, nitrate reduction and polyaromatic compound degradation. Methanogenic potential of the microbial community present in the formation water was elucidated by the production of methane in the enrichment culture, which contained 16S rRNA gene sequences showing close relatedness to the genus Methanobacterium. Microcosm using formation water as medium as well as a source of inoculum and coal as carbon source produced significant amount of methane which increased considerably by the addition of nitrite. The dominance of Diaphorobacter sp. in nitrite amended microcosm indicated their important role in supporting methanogenesis in the coal bed. This is the first study indicating existence of methanogenic and bacterial community in an Indian coal bed that is capable of in situ biotransformation of coal into methane.

Sodium 2-mercaptoethanesulfonate monohydrate (coenzyme M sodium salt monohydrate)

The 2-thio­ethanesulfonate anion is the smallest known coenzyme in nature (HS–CoM) and plays a key role in methano­genesis by anaerobic archaea, as well as in the oxidation of alkenes by Gram-negative and Gram-positive eubacteria. The title compound, Na+·C2H5O3S2 −·H2O, is the Na+ salt of HS–CoM crystallized as the monohydrate. Six O atoms form a distorted octa­hedral coordination geometry around the Na atom, at distances in the range 2.312 (4)–2.517 (3) Å. Two O atoms of the sulfonate group, one O atom of each of three other symmetry-related sulfonate groups plus the water O atom form the coordination environment of the Na+ ion. This arrangement forms Na–O–Na layers in the crystal structure, parallel to (100).