Riverine Dynamics Research Articles

Geotechnical Characterization of the Magdalena River Subsoil in Magangué, Colombia: A Study Using CPTu and SPT Tests

This study employs Cone Penetration Tests (CPTu) and Standard Penetration Tests (SPT) to analyze the geotechnical properties of the Magdalena River’s riverbed and banks. While these methods are standard in soil characterization, this research innovatively combines CPTu’s continuous profiling with SPT’s localized sampling to develop a nuanced stratigraphic model of the subsurface. This integrated approach provides a comprehensive view of the soil conditions, which is crucial for understanding sediment variability and stability along the riverbanks. The findings from this methodological integration enhance our ability to predict soil behavior under dynamic riverine conditions, offering valuable insights for erosion control and sustainable river management. The study underscores the practical benefits of synergizing traditional testing methods to address geotechnical challenges in river environments.

Estimating the effects of smolt size and migration timing on salmon marine survival using a multivariate mixed‐effect model

Abstract When the conditions encountered by a migratory species are highly variable, the timing of migration and migrant condition are critical to survival. Spring/summer‐run Chinook salmon in the Snake River of the Northwestern United States are listed as threatened under the US Endangered Species Act because of decades of poor adult returns; juvenile smolt‐to‐adult survival is often 0.5% or less. Juveniles pass through eight dams en route to the ocean, and despite changes to the hydropower system, there has been little recent improvement in survival. We analysed the effect of migration date, fish length and their interaction on the survival to adulthood of 409,747 wild juvenile Chinook salmon as they migrated through a large, dynamic riverine ecosystem and through the ocean, measured over 20 years. Parametric 2D smoothers are often used to quantify unexplained heterogeneity across space; however, these same statistical models can be applied to 2D datasets to uncover patterns of covariance of two biological processes important to management actions. We employ Gaussian Markov random fields (GMRF) and a 2D smoother to estimates of fish survival to identify the nature of variation in survival with respect to length and date. We found significant effects of fish length, migration date and the date‐by‐length interaction on resulting riverine and marine survival. Unlike the gradual shifts in survival in relation to length and timing that marginal estimates demonstrate, we show that within year, changes in survival with length and timing are often more abrupt than previously thought. Synthesis and applications: Inter‐annually, we identified distinct combinations of fish length and migration timing leading to elevated smolt‐to‐adult survival. Often these ‘hotspots’ are compressed into fish sizes greater than 100 mm and passage timings of only a week or two, demonstrating that even modest shifts in body size and migration timing can have a significant effect on survival. Further research can concentrate on these distinct annual periods to identify sources of mortality that have previously been elusive.

Quantification of landuse changes driven by the dynamics of the Jamuna River, a giant tropical river of Bangladesh

Changes in river bank location have wide consequences on floodplain communities and the sustainability of floodplain ecosystems. Although river dynamics are monitored globally and locally, understanding the impact of riverine dynamics on land use change remains a challenge. Bangladesh, part of the Bengal Delta, is mostly made up of alluvial deposits and is crisscrossed by so many rivers. Jamuna is one of the prominent rivers in this region. This study presents a consistent evaluation of the dynamics of the Jamuna river and ensuing changes in land use over 48 years (1972–2020) depending on satellite observations and geospatial analysis. Changes in the presence of water were used to estimate the advance/retreat of the banks and loss/gain of land along 257 perpendicular transects along the common pattern of the centerlines of the river. We found that the overall loss of agricultural land was about 535.01 km2, sevenfold of the gained agricultural land. Other land use losses were bare lands 136.73 km2, waterbodies 80.37 km2, settlement 67.28 km2 and vegetation 132.79 km2 against 48.47 km2, 3.52 km2, 23.76 km2 and 6.14 km2 land use gains respectively. Agricultural land loss impacts the livelihood of the floodplain dwellers and settlement loss causes internal migration. This pattern of land use change driven by the river dynamics has created newer environmental challenges and additionally, climate change may intricate the situation in the future. The findings of this study throw insight into the fact and may aid in sustainable river training measures and floodplain management.

Hydromorphological response of heavily modified rivers to flood releases from reservoirs: A case study of the Spöl River, Switzerland

AbstractReleasing experimental floods as part of environmental flow programs aims to restore river beds by moving and restoring sediments to improve hydromorphological conditions of the river. However, it remains a challenge to understand how flood release characteristics affect channel morphology, sediment transport, and hydrodynamics. In this study, field surveys and a 2D hydro‐morphodynamic and sediment transport numerical model were used to determine how differences in flood magnitude and falling limb alter hydrogeomorphic conditions within a 4 km reach of the lower Spöl River. The model was constrained by drone flight‐derived high‐resolution digital elevation models and two field‐measured flood releases. The highest flood magnitude of 40 m3/s resulted in 2,700 m3 of total sediment transport, 2,000 m3 of net total volumetric change and 16 900 m2 more wetted area after the flood. The same flood, simulated with an increase in falling limb slope, resulted in a decrease in the duration of full sediment mobility and a corresponding reduction of 8% in net total volumetric change and 5.3% in the total wetted area. Contrastingly, the lowest flood magnitude of 25 m3/s produced 130% lower total sediment transport, 105% lower net total volumetric changes and 10% less wetted area after the flood. Overall, we show that hydro‐morphodynamic modelling of river erosion and deposition combined with spatially rich topographic datasets are extremely useful in forming designed environmental flood scenarios to optimise sediment transport and thus hydrogeomorphic changes to set environmental flows. We contend that scenario modelling is necessary to help water managers optimise the amount of water allocated to environmental flows and to simultaneously restore and maintain riverine dynamics in heavily modified rivers.

Unraveling trait‐based fish community assembly in tropical reservoirs

AbstractDamming of large rivers has promoted well‐documented ecosystem changes that constitute critical threats to freshwater fish biodiversity. However, it is unclear how trait–environment relationships drive community assembly in older (>50 years) tropical river‐reservoir systems. We assessed physical features filtering functional traits (RLQ and fourth‐corner approaches) in seven tropical reservoirs along a major river, in southeastern Brazil, and correlated taxonomic and functional counterparts of local and beta diversity to assess niche‐based assembly processes under prevailing environmental conditions (null model approach). Lower littoral habitat availability (smaller area, volume, and riverine influence) favored species inhabiting open areas that feed on the bottom (mostly migratory species). Downstream position (lower elevation and inflow of water from the mainstem) allowed migrators to enter the reservoirs and promoted environmental heterogeneity, favoring detritivores, invertivores, and carnivorous generalists. Total blocking of the main channel excluded most migratory species from reservoirs at upstream reaches, whereas higher riverine influence and hydrological stability (larger area, volume, and water residence time) favored small‐sized sedentary species (omnivores and piscivores with parental care, mostly non‐native species) in the littoral zone. Correlations differing from null expectations for alpha diversity and nestedness revealed that niche‐based processes support species richness and loss under higher riverine influence and hydrological stability. Our study supports the importance of physical features to set functional spaces available for fish species, but random processes that boost taxonomic differences between reservoirs, largely related to non‐native species introductions, are the primary drivers of fish assemblage structure in tropical reservoirs long‐term disconnected from riverine dynamics.

Vertical mixing and horizontal transport unravel phytoplankton blooms in a large riverine reservoir

A precise understanding of the mechanisms causing phytoplankton blooms in reservoirs is still lacking, especially in large riverine reservoirs. To better understand these blooms, the role of the complex hydrodynamics caused by dam operation must be quantified. Here we examine how synergistic hydrodynamic processes, rather than individual metrics, trigger blooms in Xiangxi Bay, a typical tributary bay of the Three Gorges Reservoir, China. We used a 3D ecological-hydrodynamic model, which integrated hydrodynamics with the abiotic factors that limit phytoplankton growth to simulate one whole year (2010). By implementing a scaling criterion, we quantified the contribution of local phytoplankton growth and hydrodynamic processes, including advection transport and vertical mixing, on bloom dynamics. Results indicated vertical mixing was the main process inhibiting blooms in colder months (from October to February) but horizontal advection, which flushed and diluted blooms, was dominant in warmer months (from May to July) when stratification was intense and nutrients were replete. Accordingly, blooms occurred when both vertical mixing and horizontal advection were low. We suggested a potential dam operation strategy to mitigate blooms during stratification, which involves withdrawing the warm surface water from upstream reservoirs to increase horizontal flows in the surface layer. Extending the application of critical turbulence model, our study shows how vertical mixing and horizontal advection rate interact with phytoplankton growth rate to drive blooms in highly dynamic riverine systems.

Spatial Distribution of Vegetation on Stream Bars and the Riparian Zone Reflects Successional Pattern Due to Fluid Dynamics of River

The river is a dynamic space where erosion, transportation, and sedimentation are constantly occurring due to running water. This study aims to reveal the change in geomorphology caused by the flow characteristics of water in rivers and the response of vegetation to that. This study was carried out by clarifying the spatially appearing successional trends in the vegetation established in the stream bars and the riparian zones, which are located on different topographic conditions based on the vegetation profile, ordination result, and species diversity. The spatial distribution of vegetation on the stream bars tended to appear in the order of annual plant-, perennial plant-, and tree-dominated stands from the upstream toward a downstream direction (a gravel bar and a sand bar in a mountain gravel-bed river and an estuary, respectively) or the reversed one (a sand bar in a lowland river). The spatial distribution of vegetation on the riparian zones tended to appear in the order of annual plant-, perennial plant-, and tree-dominated stands from the waterfront toward the bank direction. Changes in species composition also differed depending on the spatial location, showing a similar trend to the spatial distribution of vegetation. Species diversity became higher in proportion to the longevity of the dominant species of each vegetation type. In conclusion, the longitudinal distribution pattern of vegetation on the stream bars resembles the lateral distribution of riparian vegetation, and the successional trends follow the spatial distribution pattern. These results suggest that the dynamics of bed loading, an allogenic process, may be an important determinant of the spatial distribution and succession of plant communities in dynamic riverine environments.

Amazonian birds in more dynamic habitats have less population genetic structure and higher gene flow.

Understanding the factors that govern variation in genetic structure across species is key to the study of speciation and population genetics. Genetic structure has been linked to several aspects of life history, such as foraging strategy, habitat association, migration distance, and dispersal ability, all of which might influence dispersal and gene flow. Comparative studies of population genetic data from species with differing life histories provide opportunities to tease apart the role of dispersal in shaping gene flow and population genetic structure. Here, we examine population genetic data from sets of bird species specialized on a series of Amazonian habitat types hypothesized to filter for species with dramatically different dispersal abilities: stable upland forest, dynamic floodplain forest, and highly dynamic riverine islands. Using genome-wide markers, we show that habitat type has a significant effect on population genetic structure, with species in upland forest, floodplain forest, and riverine islands exhibiting progressively lower levels of structure. Although morphological traits used as proxies for individual-level dispersal ability did not explain this pattern, population genetic measures of gene flow are elevated in species from more dynamic riverine habitats. Our results suggest that the habitat in which a species occurs drives the degree of population genetic structuring via its impact on long-term fluctuations in levels of gene flow, with species in highly dynamic habitats having particularly elevated gene flow. These differences in genetic variation across taxa specialized in distinct habitats may lead to disparate responses to environmental change or habitat-specific diversification dynamics over evolutionary time scales.

Impact of the Salt Concentration and Biophysical Cohesion on the Settling Behavior of Bentonites

The flocculation behavior of clay minerals in aquatic environments is an important process in estuarine and riverine dynamics, where strong gradients in salinity can locally occur. Various contradicting observations have been reported in the literature on the impact of salt concentration on the settling process of cohesive sediments. To address this issue in a systematic manner, we investigate the settling behavior of clay minerals as a function of the salt concentration of the ambient water. Specifically, we focus on montmorillonite as a prototype clay mineral with a high cation exchange capacity (CEC). To this end, we study suspensions of Wyoming bentonite (Volclay SPV) as a very important constituent for many constructional and industrial purposes. We perform an experimental campaign to study the settling behavior of moderately turbid montmorillonite concentrations in monovalent salt solutions with different salinities (sodium chloride) to represent different environments ranging from deionized to ocean water, respectively. The subsequent settling process was monitored by taking pictures by a camera in regular time intervals over a total observation time up to 48 h. In addition, a modified hydrometer analysis is conducted to determine the grain size distribution (in terms of an equivalent diameter) of the flocculated clay suspension in salt water. Despite the rather high cation exchange capacity of the investigated clay (CEC=88.1), our results show that the settling speed drastically increases within a range of 0.6–1.0 PSU and stays approximately constant for higher salinities. This critical salt concentration is defined here as the critical coagulation concentration (CCC) and lies well below the salinity of natural open water bodies. The hydrometer analysis revealed that 60% of the agglomerates exceed the equivalent grain size of 20 μm. Finally, the findings of this study are supplemented with experiments studying the effect of Extracellular Polymeric Substances (EPS) on the flocculation behavior of bentonite in salt water. Our results demonstrate that salinity is the original trigger for flocculation, whereas EPS allows for even larger floc size but it does not play a significant role for the settling processes of bentonite in estuarine environments.

Predicting Dynamic Riverine Nitrogen Export in Unmonitored Watersheds: Leveraging Insights of AI from Data-Rich Regions.

Terrestrial export of nitrogen is a critical Earth system process, but its global dynamics remain difficult to predict at a high spatiotemporal resolution. Here, we use deep learning (DL) to model daily riverine nitrogen export in response to hydrometeorological and anthropogenic drivers. Long short-term memory (LSTM) models for the daily concentration and flux of dissolved inorganic nitrogen (DIN) were built in a coastal watershed in southeastern China with a typical subtropical monsoon climate. The DL models exhibited excellent accuracy for both DIN concentration and flux, with Nash-Sutcliffe efficiency coefficients (NSEs) up to 0.67 and 0.92, respectively, a performance unlikely to be achieved by generic process-based models with comparable data quality. The flux model ensemble, without retraining, performed well (mean NSE = 0.32-0.84) in seven distinct watersheds in Asia, Europe, and North America, and retraining with multi-watershed data further improved the lowest NSE from 0.32 to 0.68. DL interpretation confirmed that interbasin consistency of riverine nitrogen export exists across different continents, which stems from the similarities in rainfall-runoff relationships. The multi-watershed flux model projects 0.60-12.4% increases in the nitrogen export to oceans from the studied watersheds under a 20% increase in fertilizer consumption, which rises to 6.7-20.1% with a 10% increase in runoff, indicating the synergistic effect of human activities and climate change. The DL-based method represents a successful case of explainable artificial intelligence in environmental science, providing a potential shortcut to a consistent understanding of the global daily-resolution dynamics of riverine nitrogen export under the currently limited data conditions.

Gene flow in a pioneer plant metapopulation (Myricaria germanica) at the catchment scale in a fragmented alpine river system

River alterations for natural hazard mitigation and land reclamation result in habitat decline and fragmentation for riparian plant species. Extreme events such as floods are responsible for additional local species loss or population decline. Tributaries might provide refugia and subsequent source populations for the colonization of downstream sites in connected riverine networks with metapopulations of plant species. In this study, we analyzed the metapopulation structure of the endangered riparian shrub species Myricaria germanica along the river Isel, Austria, which is part of the Natura 2000 network, and its tributaries. The use of 22 microsatellite markers allowed us to assess the role of tributaries and single populations as well as gene flow up- and downstream. The analysis of 1307 individuals from 45 sites shows the influence of tributaries to the genetic diversity at Isel and no overall isolation by distance pattern. Ongoing bidirectional gene flow is revealed by the detection of first-generation migrants in populations of all tributaries as well as the river Isel, supporting upstream dispersal by wind (seeds) or animals (seeds and pollen). However, some populations display significant population declines and high inbreeding, and recent migration rates are non-significant or low. The genetic pattern at the mouth of river Schwarzach into Isel and shortly thereafter river Kalserbach supports the finding that geographically close populations remain connected and that tributaries can form important refugia for M. germanica in the dynamic riverine network. Conservation and mitigation measures should therefore focus on providing sufficient habitat along tributaries of various size allowing pioneer plants to cope with extreme events in the main channel, especially as they are expected to be more frequent under changing climate.

Drivers of historical and projected changes in diverse boreal ecosystems: fires, thermokarst, riverine dynamics, and humans

Alaska has diverse boreal ecosystems across heterogeneous landscapes driven by a wide range of biological and geomorphic processes associated with disturbance and successional patterns under a changing climate. To assess historical patterns and rates of change, we quantified the areal extent of ecotypes and the biophysical factors driving change through photo-interpretation of 2200 points on a time-series (∼1949, ∼1978, ∼2007, ∼2017) of geo-rectified imagery for 22 grids across central Alaska. Overall, 68.6% of the area had changes in ecotypes over ∼68 years. Most of the change resulted from increases in upland and lowland forest types, with an accompanying decrease in upland and lowland scrub types, as post-fire succession led to mid- and late-successional stages. Of 17 drivers of landscape change, fire was by far the largest, affecting 46.5% of the region overall from 1949 to 2017. Fire was notably more extensive in the early 1900s. Thermokarst nearly doubled from 3.9% in 1949 to 6.3% in 2017. Riverine ecotypes covered 7.8% area and showed dynamic changes related to channel migration and succession. Using past rates of ecotype transitions, we developed four state-transition models to project future ecotype extent based on historical rates, increasing temperatures, and driver associations. Ecotype changes from 2017 to 2100, nearly tripled for the driver-adjusted RCP6.0 temperature model (30.6%) compared to the historical rate model (11.5%), and the RCP4.5 (12.4%) and RCP8.0 (14.7%) temperature models. The historical-rate model projected 38 ecotypes will gain area and 24 will lose area by 2100. Overall, disturbance and recovery associated with a wide range of drivers across the patchy mosaic of differing aged ecotypes led to a fairly stable overall composition of most ecotypes over long intervals, although fire caused large temporal fluctuations for many ecotypes. Thermokarst, however, is accelerating and projected to have increasingly transformative effects on future ecotype distributions.

Effective restoration measures in river‐floodplain ecosystems: Lessons learned from the ‘Wilde Mulde’ project

AbstractOver the last 40 years, a growing number of restoration projects have been implemented to improve the ecological conditions of highly degraded rivers and their floodplains. Despite considerable investment in these projects, information is still limited about the effectiveness and the success of such river restoration measures, mainly due to a lack of standardised and interdisciplinary assessment approaches. During the project ‘Wilde Mulde—Restoration of a dynamic riverine landscape in Central Germany’, we implemented hydromorphological restoration measures (installation of large wood, removal of rip‐rap, reconnection of a former river side‐arm) along a lowland river in Central Germany. We carried out intensive scientific monitoring of biodiversity, hydromorphology, ecosystem functions and services, as well as socio‐economic aspects. A Before/After‐Control/Impact (BACI) design was used to identify the spatial and temporal effects of the restoration measures and to distinguish them from changes caused by background variation. For this, we used a comprehensive set of indicators, including abiotic (flow velocity, diversity of riverbed topography, and flow resistance), biological (ecosystem respiration, macroinvertebrates, fish, carabids, vegetation, and birds) and socio‐economic (acceptance and public awareness) indicators as well as the ecosystem service indicator aesthetic quality of the landscape. To meet the inherent challenges of such a large‐scale field experiment, like unpredictable environmental conditions, we used an experimental approach that allowed us to demonstrate a measurable success of the implemented restoration measures. The majority of the abiotic and some of the biological and socio‐economic indicators at the restored sites approached values of a natural reference site while already deviating from values of a nonnatural reference site two years after restoration. In addition to the applied interdisciplinary approach, multiple scales of field investigations and data analyses are essential as key components for evaluating successful river and floodplain restoration projects.

Special issue editorial: Revitalisation of dynamic riverine landscapes—Evaluation of the effects of hydromorphological restoration measures

AbstractThe progressive loss of biodiversity in rivers and their floodplains has not yet been stopped. With the European Biodiversity Strategy and the goal of restoring at least 25,000 km of free‐flowing European rivers by 2030, the first important step has been taken. Now we need to be able to effectively demonstrate a reversal of biodiversity loss as well as the success of urgently needed restoration measures. This special issue presents twelve results of current river and floodplain restoration and evaluation approaches that have successfully combined hydromorphological restoration measures with interdisciplinary research. We report comprehensively on the challenges and opportunities that river and floodplain restoration can offer to protect the biodiversity and ecosystem functioning of these habitats.

Vegetal Undercurrents-Obscured Riverine Dynamics of Plant Debris.

Much attention has been focused on fine‐grained sediments carried as suspended load in rivers due to their potential to transport, disperse, and preserve organic carbon (OC), while the transfer and fate of OC associated with coarser‐grained sediments in fluvial systems have been less extensively studied. Here, sedimentological, geochemical, and biomolecular characteristics of sediments from river depth profiles reveal distinct hydrodynamic behavior for different pools of OC within the Mackenzie River system. Higher radiocarbon (14C) contents, low N/OC ratios, and elevated plant‐derived biomarker loadings suggest a systematic transport of submerged vascular plant debris above the active riverbed in large channels both upstream of and within the delta. Subzero temperatures hinder OC degradation promoting the accumulation and waterlogging of plant detritus within the watershed. Once entrained into a channel, sustained flow strength and buoyancy prevent plant debris from settling and keep it suspended in the water column above the riverbed. Helical flow motions within meandering river segments concentrate lithogenic and organic debris near the inner river bends forming a sediment‐laden plume. Moving offshore, we observe a lack of discrete, particulate OC in continental shelf sediments, suggesting preferential trapping of coarse debris within deltaic and neritic environments. The delivery of waterlogged plant detritus transport and high sediment loads during the spring flood may reduce oxygen exposure times and microbial decomposition, leading to enhanced sequestration of biospheric OC. Undercurrents enriched in coarse, relatively fresh plant fragments appear to be reoccurring features, highlighting a poorly understood yet significant mechanism operating within the terrestrial carbon cycle.

The Lower Rhine (Germany) in Late Antiquity: a time of dissolving structures

Abstract From the middle of the 1st century AD, the Lower Rhine was part of the frontier of the Roman Empire (Limes). However, this Limes was not an impermeable line, but rather an open corridor that served as march area and as a trade and supply route for the adjacent military and civilian settlements as well as the hinterland. This required access to the river and permanent harbours. When planning military camps and towns along the Rhine, the existing topography and the challenge of a dynamic riverine landscape had to be taken into account. The prefered location for forts and towns were the raised edges of the Lower Terraces close to the undercut bank of a meander. For many years, research assumed that the river bend adjacent to a Roman site had to be an oxbow lake. The main argument being that only an oxbow situation would have protected the Roman sites against strong currents and the risk of demolition of land and settlements by the main stream (abandoned channel hypothesis). A re-evaluation of the extensive archaeological, sedimentological and palynological archive and published data from the Rhine plain, as well as of supplementary data from new boreholes, lead to a considerable increase in the previously incomplete knowledge of the fluvial history, especially regarding the timing of palaeomeander infilling. It showed that most of the meanders and river bends of the Rhine with Roman settlements on their banks not silted up before Late Antiquity (from the end of the 3rd century AD on). Before that those meanders were part of the main stream. The advantage of steep undercut banks was that a quay could be built on a location that ensured mooring all year round, even at low water level. However, it was necessary that stabilising bank protections were present in order to avoid shifting the course of the river with subsequent destruction of the infrastructure. Such an antique bank protection construction (a so called “Packwerk”) could be recognised in front of the Colonia Ulpia Traiana (CUT, Xanten). With this knowledge in mind, other excavated structures on the banks of palaeomeanders, previously mostly interpreted as Roman harbour remains, could be interpreted as bank protections. At Wesel near the strategically important mouth of the Lippe, the archaeological, sedimentological and palynological data showed that a meander that had silted up in Prehistoric times (Bronze Age) had been reactivated in Roman times and silted up again in Late Antiquity. A man-made diversion (perhaps by building a groyne) of the main stream could have been responsible for this. With the beginning of the Late Antiquity crisis of the Roman Empire at the end of the 3rd century, it presumably became increasingly difficult to maintain these water works. This enabled the river to regain its morphodynamics, by cutting of the meanders that were active during Roman times. We hypothesise that this increase in fluvial activities of the Lower Rhine from the end of the 3rd century onwards is due to an anthropogenic trigger: the collapse of the Roman Empire.

Biodiversity assessment across a dynamic riverine system: A comparison of eDNA metabarcoding versus traditional fish surveying methods

AbstractWhile many studies have considered the ability of eDNA to assess animal communities in lacustrine settings, fewer have considered riverine systems, particularly those spanning the environmental gradients present in large river basins. Such dynamic systems are challenging for eDNA biomonitoring due to differing eDNA transport distances in rivers and the effects of river chemistry. To address this challenge, we focused on the Thames River system, UK, which has exceptional historical fish records providing a baseline to test the accuracy of eDNA metabarcoding in recovering fish community structure across both fresh and tidal zones. Two primer sets targeting 12S and CO1 regions were used to capture fish communities across the Thames catchment, from the upper freshwaters to the mid estuary. eDNA was collected at 35 sites, 14 of which were simultaneously paired with traditional fish surveys for direct comparison. We demonstrated that eDNA metabarcoding consistently detected more freshwater species than traditional methods, despite extensive sampling effort using the latter. In contrast, metabarcoding did not perform as well as traditional approaches in estuarine waters, although results included the novel detection of the protected sea lamprey. We further demonstrated that minor variations in the recovery of all approaches would not impact on the assessment of simple ecological models of community structure and, thus, some variability between approaches should not be viewed as a serious hindrance to uptake. Rather, our findings support a growing consensus that eDNA can reliably detect fish communities across dynamic freshwater habitats.

Gene flow in a highly dynamic habitat and a single founder event: Proof from a plant population on a relocated river site

River relocations due to realization of infrastructure projects or flood protection provide a high potential for ecological restorations and the creation of near-natural habitats. Colonization success of new riparian habitats in the dynamic riverine zone is rarely predictable, as the survival of sessile plants is highly dependent on flood events. Relocated rivers offer a unique opportunity to study restoration success, and using genetic information allows tracing to source populations and assessing connectivity. This study focuses on the colonization of a new, 3.4 km long river stretch in the Inn catchment (Switzerland), with an artificial, stable shoreline and a dynamic riverine zone with gravel bars. We assess the colonization success of Myricaria germanica, a flagship species for floodplain pioneer vegetation, 14 years after river relocation. The population with over 600 individuals of which 147 were used for genetic analysis based on 22 microsatellite markers in comparison to 11 potential source populations up- and downstream of the new site. Our results on demography and genetic composition together with information on flood events allow tracing the origin of the subpopulation along the stable shoreline to a single founder event but several founder individuals further upstream. The subpopulation in the dynamic zone is younger and more likely strongly dependent on gene flow from the stable shoreline subpopulation, but allows for rejuvenation at the site. Genetic patterns along the catchment indicate ongoing gene flow, suggesting potential for colonization success for further restorations in the catchment. Our data reveals that near-natural flood dynamics with repeated larger flood events is a key factor for successful colonization of dynamic riparian habitats.

Modeling Impacts of Submersed Aquatic Vegetation on Sediment Dynamics Under Storm Conditions in Upper Chesapeake Bay

Submersed aquatic vegetation is an important modulator of sediment delivery from the Susquehanna River through the Susquehanna Flats into the Chesapeake Bay. However, the dynamic interactions between vegetation and the physical drivers of sediment transport through the region are not well understood. This study used a new vegetation component in a coupled flow-wave-sediment transport modeling system (COAWST) to simulate summer through fall 2011, when the region experienced a sequence of events including Hurricane Irene and Tropical Storm Lee. Fine sediment was exported under normal flows and high-wind forcing but accumulated under high flows, with accumulation doubling in the presence of vegetation. The relative effects of vegetation under normal flows and high-wind forcing depended on previous sediment dynamics. The presence of vegetation facilitated deposition of fine sediments within the patch under normal flows and subsequent resuspension during a wind-driven event. However, during significant discharge events, the system was completely dominated by riverine dynamics with vegetation enhancing net deposition as well as channeling the flow. While further refinement of the bed model may be needed to capture some nuances, the COAWST modeling system provides new insights into detailed sediment dynamics in complex vegetated deltaic systems.

A greedy non-intrusive reduced order model for shallow water equations

In this work, we develop Non-Intrusive Reduced Order Models (NIROMs) that combine Proper Orthogonal Decomposition (POD) with a Radial Basis Function (RBF) interpolation method to construct efficient reduced order models for time-dependent problems arising in large scale environmental flow applications. The performance of the POD-RBF NIROM is compared with a traditional nonlinear POD (NPOD) model by evaluating the accuracy and robustness for test problems representative of riverine flows. Different greedy algorithms are studied in order to determine a near-optimal distribution of interpolation points for the RBF approximation. A new power-scaled residual greedy (psr-greedy) algorithm is proposed to address some of the primary drawbacks of the existing greedy approaches. The relative performances of these greedy algorithms are studied with numerical experiments using realistic two-dimensional (2D) shallow water flow applications involving coastal and riverine dynamics.