Soil Respiration Activity Research Articles

Herbicides Effects on Soil Functions: A Review

This review explores the impact of herbicides on soil functions, offering a detailed analysis of how these chemicals influence soil health. Herbicides, commonly used for controlling unwanted plants, often disturb the balance of soil ecosystems by altering microbial diversity, disrupting nutrient cycling, and affecting organic matter breakdown. The findings show that herbicides can either inhibit or stimulate soil microbial activities, depending on their type, concentration, and environmental conditions. While some herbicides have minimal short-term effects on soil respiration and microbial activity, others significantly reduce soil enzyme activities, slow down nitrogen mineralization, and disrupt beneficial microbial relationships, such as those involving mycorrhizal fungi. The persistence of herbicide residues in soil presents further challenges, with potential risks of contaminating soil and groundwater. It highlights the importance of using herbicides carefully, considering both their effectiveness in weed control and their long-term effects on soil health. However, the paper concludes with an evaluation of the ecological and evolutionary impacts of herbicides on soil microbial communities, calling for further research to fully understand these complex interactions.

Impact of winter coverage crops and nitrogen fertilization on soil respiration and nitrogen mineralization in no-tillage systems

Microbiological activity in soil is crucially important to maintaining soil quality. Soil is sensitive to management practices, and microbiological activity plays a crucial role in processes like transforming organic N into inorganic fractions. The objective of this study was to assess how winter coverage crop residues influence soil respiratory activity and N mineralization during successive corn crop developments under a no-tillage regime. We employed a randomized block experimental design with subdivided plots and three replications. The main plots comprised various coverage crops (Black Oats, Ryegrass, Rye, White Lupin, Common vetch, Turnip, consortia of Oats + Vetch and Oats + Vetch + Turnip, while subplots received doses of N-mineral (0 and 180 kg ha-1) during the corn growth stage. We evaluated the respiratory activity of microorganisms and levels of inorganic N in the soil throughout the corn crop cycle. The consortia of coverage crops exhibited distinct responses in respiratory rates, with Oats + Vetch having superior results compared to Oats + Vetch + Turnip. We observed positive responses in nitric N (N-NO3-) due to the mineralization of common vetch residues within the first fifteen Days After Sowing (DAS). However, N-mineral doses from nitrogen fertilization during the corn coverage age phase did not alter the respiratory of the microorganisms nor did it alter the concentrations of N-NH4+ in the soil. Mineral fertilization resulted in the immediate availability of N in the form of N-NO3-.

Digestate Improves Stinging Nettle (Urtica dioica) Growth and Fiber Production at a Chlor-Alkali Site.

Marginal lands have been proposed to produce non-food crop biomass for energy or green materials. For this purpose, the selection, implementation, and growth optimization of plant species on such lands are key elements to investigate to achieve relevant plant yields. Stinging nettle (Urtica dioica) is a herbaceous perennial that grows spontaneously on contaminated lands and was described as suitable to produce fibers for material applications. Two mercury-contaminated soils from industrial wastelands with different properties (grassland soil and sediment landfill) were used in this study to assess the potential growth of stinging nettle in a greenhouse mesocosm experiment. Two organic amendments were studied for their impact on nettle growth. The solid digestate from organic food wastes significantly doubled plant biomass whereas the compost from green wastes had a lower impact. The highest doses of organic amendments significantly increased the number of fibers, which doubled following digestate application, while reducing leaf Hg concentration. Both amendments significantly improved soil respiration and enzymatic activities linked to the microbial biomass in the soil from the sediment landfill by the end of the experiment. In the context of a phytomanagement scenario, solid digestate would be a preferred amendment resource to improve nettle production on industrial wastelands.

Effect of turfgrass care products on soil biological health, disease suppression, and turfgrass quality

Despite the wide use of turfgrass care products such as wetting agents (WAs), plant growth regulators (PGRs), and biological products (BPs), little is known about their effect on soil biological health, turfgrass quality, and disease suppression. Studies were conducted to evaluate the effect of some commonly used turfgrass care products on soil biological health, dollar spot suppression, and turfgrass quality. The turfgrass care products were: nine WAs (Vivax, Fleet, Magnus, Cascade, Dispatch, Duplex, Pervade, Sixteen90, and Revolution); four PGRs (Anuew, Trimmit, Proxy, and Cutless) and; three BPs (Plant Helper, KaPreRemeD8-NSL, and KaPreRemeD8-NSP). Potted bentgrass (Agrotis stolonifera L.) were treated independently with the WAs, PGRs, and BPs, and deionized water was used as a control. Soil samples were collected from the pots at 7 and 14 weeks after treatment (WAT) and analyzed for soil biological health using soil respiration, urease, and phosphatase activities as indicators. Disease suppression was evaluated by inoculating potted bentgrass with an isolate of Clarireedia jacksonii, the causal agent of dollar spot of cool season grasses and the infection was visually assessed at intervals of 10 days. The WAs Dispatch, Fleet, Magnus, and Vivax stimulated rate of soil respiration at 7 WAT compared to the control. The PGRs Cutless, Trimmit, and Proxy had no effect on soil respiration whereas Anuew suppressed soil respiration. Turfgrass quality was improved by the WAs Revolution, Cascade, Pervade, Duplex, and Sixteen90 at 7 WAT, but none of the PGRs and BPs improved turf quality. Cascade stimulated phosphatase activity and was the only product to impact this indicator. None of the products had a significant effect on dollar spot suppression. These results could guide turfgrass growers and professionals in making decisions that enhance the quality of turfgrass without compromising the health of the soil that sustains it.

Newly plant-derived carbon in the deeper vadose zone of a sandy agricultural soil does not stimulate denitrification

Analysis of stable carbon (C) isotopic signatures (δ13C) in various soil C pools provides useful information on soil C sources, transport, and availability. Understanding the extent of deeper soil (below 40 cm) sequestration and transport of plant derived C is of particular interest as this provides a source for microorganisms to drive biological denitrification (as indicated by denitrification enzyme activity, DEA) and hence mitigate the nitrate leaching to groundwater. Meanwhile, studies on deeper soil C sequestration are rare due to methodological constraints. This study was done in deeper vadose zone (0–160 cm) of a sandy agricultural soil in a humid and temperature zone after a C3-C4 vegetation change taking advantage of the marked isotopic differences between C3 and C4 plants. It took place in a site previously grown with C3 crops (beet, barley, grass), but where C4 crops (maize) were grown continuously for the last 20 years. The other site where C3 crops were continuously grown was used for comparison. Specifically, the δ13C signature in top and deeper soil layers was used to distinguish between old C3– and newly C4-plant derived C in four C pools, i.e., bulk soil C, hot- and cold-water extractable C, and respired CO2-C. The δ13C signature between C3 soils and C3-C4 shifted soils was similar for bulk soil C but significantly different for water extractable and respired C pools. Hence, we estimated that the contribution of newly derived C to bulk soil C was negligible, whereas the contributions to the other C pools amounted up to 28.4 % along the soil profile. This emphasizes the importance of simultaneously analysing δ13C signature in various soil C pools to accurately assess C vertical transport and distribution. The concentrations of cold-DOC and values of specific ultraviolet visible absorbance of the wavelengths 254 and 280 nm decreased from 50 to 130 cm soil depths, while they increased below these depths. However, this suggested rise in C chemical quality at the deepest soil depths did not cause an increase in soil respiration activity or DEA, which was attributed to the protective effects of iron and aluminium oxides on C decomposition. Upon the application of labile C and N substrates, the deepest soil layers displayed a significantly increased DEA, suggesting the presence of a relatively abundant population of active denitrifying organisms. Overall, this study documents the presence of plant-derived C in the deeper vadose zone. Meanwhile, this particular C pool might not be an important substrate to drive deep-soil denitrification due to constraints imposed by the protection by metal oxides.

Strengthen sunflowers resilience to cadmium in saline-alkali soil by PGPR-augmented biochar

In the center of the Nile Delta in Egypt, the Kitchener drain as the primary drainage discharges about 1.9 billion m3 per year of water, which comprises agricultural drainage (75 %), domestic water (23 %), and industrial water (2 %), to the Mediterranean Sea. Cadmium (Cd) stands out as a significant contaminant in this drain; therefore, this study aimed to assess the integration of biochar (0, 5, and 10 ton ha−1) and three PGPRs (PGPR-1, PGPR-2, and PGPR-3) to alleviate the negative impacts of Cd on sunflowers (Helianthus annuus L.) in saline-alkali soil. The treatment of biochar (10 ton ha−1) and PGPR-3 enhanced the soil respiration, dehydrogenase, nitrogenase, and phosphatase activities by 137 %, 129 %, 326 %, and 127 %, while it declined soil electrical conductivity and available Cd content by 31.7 % and 61.3 %. Also, it decreased Cd content in root, shoot, and seed by 55.3 %, 50.7 %, and 92.5 %, and biological concentration and translocation factors by 55 % and 5 %. It also declined the proline, lipid peroxidation, H2O2, and electrolyte leakage contents by 48 %, 94 %, 80 %, and 76 %, whereas increased the catalase, peroxidase, superoxide dismutase, and polyphenol oxidase activities by 80 %, 79 %, 61 %, and 116 %. Same treatment increased seed and oil yields increased by 76.1 % and 76.2 %. The unique aspect of this research is its investigation into the utilization of biochar in saline-alkali soil conditions, coupled with the combined application of biochar and PGPR to mitigate the adverse effects of Cd contamination on sunflower cultivation in saline-alkali soil.

Biochar applications and enzyme activity, carbon dioxide emission, and carbon sequestration in a calcareous soil

Biochar is a carbon-rich product obtained by biomass pyrolysis and is considered as a means of carbon sequestration. However, there is limited knowledge regarding responses of soil respiration and C-cycle enzyme activities to BC in a calcareous soil. In this study, different biochar AS, TS, PP, CS were applied to the soil at different rates (0.5, 1.0, and 1.5%) The highest increase in soil organic C content was observed in the TS treatment, while the AS treatment caused a slight increase of soil organic C. The highest MBC content was recorded in AS treatment and the lowest was observed in TS. The highest CO2-C emission was recorded in the TS treatment. In contrast, the lowest CO2-C emission was observed in the PP treatment due to its high recalcitrant C content and was attributed to a positive priming effect, stabilizing BC mineralization to improve the soil. The highest β-galactosidase enzyme activity was observed in the CS treatment and the lowest activity was observed in AS. The highest change in β-glycosidase enzyme activity was observed of PP treatment and the lowest was in AS biochar application. Thus, TS treatment is recommended to increase the organic C content of soils, and the PP biochar can be used to reduce CO2-C emission. The TS, PP, and CS can be applied to increase enzyme activities. The study clearly shows that the addition of BC to arid soils may have a high potential to improve soil enzyme activities and subsequent carbon sequestration and biochemical cycles.

Bioremediation of Crude Oil Contaminated Saline Soil Using a Bacterial Consortium and Different Carriers

AbstractBioremediation of crude‐oil‐contaminated soils is critical to supporting soil ecosystem health and functioning. Here, to explore the potential for different remediation strategies to restore soil microbial functioning and enhance remediation, three strains of bacteria, Bacillus toyonensis, Bacillus sp. and Bacillus cereus, were inoculated to saline, crude oil‐contaminated soil collected from Azadegan Oil Field, Iran. Bacteria were added using different carriers, including corn biochar, humic acid, chitosan and kaolin, and free bacteria as a control. Changes in soil metal concentrations and residual crude oil were determined after 60 days of incubation. Soil respiration, microbial biomass, and enzyme (dehydrogenase and catalase) activities were measured. The carriers accompanying a bacterial consortium were more efficient than free bacteria in removing crude oil and heavy metals from soil, and they performed better in removing n‐alkanes with carbon chains of C12–24. The oil removal rate and metal immobilization efficiencies were greatest in soils with chitosan‐bacteria treatment, with removal of crude oil, Al, Pb, Sr, and Cr (93%, 63%, 37%, 54%, and 15%, respectively) greater than for soils with free cells without treatment (61%, 54%, 9%, 50%, and 3%, respectively). Soil electrical conductivity decreased after application of bacterial mixtures with and without carriers. The inoculation of bacteria and application of soil amendments increased soil microbial biomass carbon and the activity of catalase and dehydrogenase. Overall, our results indicated the greatest potential remediation was achieved by applying immobilized microorganisms in chitosan to accelerate the biodegradation of crude oil and the removal of heavy metals.

ACC deaminase producing bacteria alleviate the polyethylene glycol induced drought stress in black gram (Vigna mungo L.) by enhancing nutrient uptake and soil respiration activity

The present study aimed to exploit ACC deaminase (ACCD) producing drought-tolerant bacteria to mitigate drought stress (PEG stress) and simultaneous enhancement of the essential nutrients (N and P), relative water content (RWC), and chlorophyll pigment. In this study, 80 previously isolated ACCD-producing bacteria were screened for drought tolerance, and the results showed that 13.75 % (11isolates) were tolerant to up to -0.73 MPa. Further, screening of these drought tolerant ACCD producers revealed that the 11 isolates produced siderophore (96.82–99.67 %), indole-3-acetic acid like substances (15.15–70.55 µg/mL), and phosphate solubilization (39.33–142.67 µg/mL). Furthermore, pot studies (2000 ppm PEG stress) revealed an enhanced root (40.97–174.24 %) and shoot length (14.06–194.86 %) in inoculated plants compared to the control plants. In addition, inoculated plants also enhanced the uptake of nitrogen (35.10–42.61 mg/g) and phosphorus (2.67–3.68 mg/g), relative water content (55.26–83.33 %), chlorophyll (15.83–47.25 mg/g) and ACCD production in the soils (2.03–5.51 µmol/mL). The inoculated bacteria also enhanced the soil respiration activity such as dehydrogenase enzyme (65.31–144.48 µg/g), fluorescein diacetate hydrolysis (19.27–55.25 µg/g), and alkaline phosphatase (611.53–1011.53 µg/g). In conclusion, IPTS 7 (Rhodococcus kroppenstedtii) and CWN 5 (Bacillus altitudinis) can be used to mitigate drought stress and mobilize essential nutrients (N and P).

Investigation of the effects of different substrates on the promotion of the soil microbial consortium, encompassing bacteria and fungi, in the bioremediation of decabromodiphenyl ether (BDE-209).

Decabromodiphenyl ether (BDE-209) is recognized as an emerging and hazardous pollutant in numerous ecosystems. Despite this, only a few studies have concurrently investigated the biodegradation of BDE-209 by a microbial consortium comprising both bacteria and fungi. Consequently, the interactions between bacterial and fungal populations and their mutual effects on BDE-209 degradation remain unclear. Our main objective was to concurrently assess the changes and activity of bacterial and fungal communities during the biodegradation of BDE-209 in a real soil matrix. In the present study, various organic substrates were employed to promote soil biomass for the biodegradation of BDE-209. Soil respiration and molecular analysis were utilized to monitor biological activity and biomass community structure, respectively. The findings revealed that the use of wheat straw in the soil matrix resulted in the highest soil respiration and microbial activity among the treatments. This approach obviously provided suitable habitats for the soil microflora, which led to a significant increase in the biodegradability of BDE-209 (49%). Biomass survival efforts and the metabolic pathway of lignin degradation through co-metabolism contributed to the biodegradation of BDE-209. Microbial community analysis identified Proteobacteria (Alphaproteobacteria-Betaproteobacteria), Firmicutes, Bacteroides (bacterial phyla), as well as Ascomycota and Basidiomycota (fungal phyla) as the key microorganisms in the biological community involved in the biodegradation of BDE-209. This study demonstrated that applying wheat straw can improve both the biological activity and the biodegradation of BDE-209 in the soil of polluted sites.

Effects of Organic Substrate Amendments on Selected Organic Fractions and Biochemical Parameters under Different Soils.

The application of organic substrates can affect soil respiration, dehydrogenase (DH-ase) activity, dissolved organic carbon (DOC), and humic acid (HA) fractions. This study aimed to evaluate the effects of five organic substrates in the organic fractions of degraded alluvial soil, acid sulfate soil, and sandy soils and the physicochemical properties of the soil. Soil samples were amended at a rate of 5 tons ha-1 with (1) water hyacinth compost, (2) sugarcane filter cake compost, (3) biogas sludge-rice straw compost, (4) vermicompost, and (5) sludge. The results showed that soil respiration and DH-ase activity increased rapidly within the first 5 days of incubation, while the concentrations of DOC and HA decreased throughout the incubation period. The highest respiration and DH-ase activity occurred after the application of vermicompost. DOC was found to be the highest in soils amended with sugarcane. The highest concentration of HA was observed with the application of sugarcane residues, regardless of the type of soil. The application of water hyacinth and biogas sludge stimulated cumulative HA only in the acid sulfate soil, while vermicompost improved HA only in the degraded soil. The largest stimulation in respiration and DH-ase activity was observed in degraded and sandy soils, regardless of the type of amendment. In the acid sulfate soil (3.7 mg·C·g-1), larger amounts of DOC and HA were observed than in both degraded (1.7 mg·C·g-1) and sandy soils (1 mg·C·g-1). However, DH-ase activity was the lowest in acid sulfate soil.

Long-term warming increased carbon sequestration capacity in a humid subtropical forest.

Tropical and subtropical forests play a crucial role in global carbon (C) pools, and their responses to warming can significantly impact C-climate feedback and predictions of future global warming. Despite earth system models projecting reductions in land C storage with warming, the magnitude of this response varies greatly between models, particularly in tropical and subtropical regions. Here, we conducted a field ecosystem-level warming experiment in a subtropical forest in southern China, by translocating mesocosms (ecosystem composed of soils and plants) across 600 m elevation gradients with temperature gradients of 2.1°C (moderate warming), to explore the response of ecosystem C dynamics of the subtropical forest to continuous 6-year warming. Compared with the control, the ecosystem C stock decreased by 3.8% under the first year of 2.1°C warming; but increased by 13.4% by the sixth year of 2.1°C warming. The increased ecosystem C stock by the sixth year of warming was mainly attributed to a combination of sustained increased plant C stock due to the maintenance of a high plant growth rate and unchanged soil C stock. The unchanged soil C stock was driven by compensating and offsetting thermal adaptation of soil microorganisms (unresponsive soil respiration and enzyme activity, and more stable microbial community), increased plant C input, and inhibitory C loss (decreased C leaching and inhibited temperature sensitivity of soil respiration) from soil drying. These results suggest that the humid subtropical forest C pool would not necessarily diminish consistently under future long-term warming. We highlight that differential and asynchronous responses of plant and soil C processes over relatively long-term periods should be considered when predicting the effects of climate warming on ecosystem C dynamics of subtropical forests.

The Ameliorating Effect of Alkaline Industrial Byproducts in the Presence of Exogenous Low-Molecular-Weight Organic Acids on an Acidic Brown Soil from Jiaodong Peninsula of China

ABSTRACT It has been proposed that the quality of acidic soils can be improved in the presence of alkaline byproduct amendments containing silicon (Si), calcium (Ca), magnesium (Mg), and potassium (K). In the present study, we aimed to explore the effect of byproduct amendments on ameliorating acidic soil in Jiaodong Peninsula of China in the existence of different types of low-molecular-weight organic acids (LOAs, such as malic acid, citric acid, oxalic acid, and succinic acid) that are usually excreted by plant roots. Therefore, a 60-day incubation test was carried out to assess the effect of byproduct amendments and LOAs on soil physicochemical properties, soil available Mg and Ca, cation exchange capacity (CEC), soil respiration, and enzyme activities. The results showed that in the presence of LOAs, the byproduct amendments could still increased the soil pH and decreased the soil exchangeable acid and exchangeable Al3+. Compared with the control group (CK), all byproduct amendment-containing treatments could increase soil available Mg and Ca, soil CEC, soil respiration, and soil sucrase (S-SC) activity. The addition of byproduct amendments could significantly improve the chemical and biological properties of the acidic brown soils in Jiaodong Peninsula of China. However, LOAs, especially the LOAs that could precipitate with Ca in byproduct amendments, negatively impair the ameliorating effect on acidic soil compared with byproduct amendments alone treatment. When using byproduct amendments to ameliorate acidic soil, the type of LOAs secreted by plant roots was an influencing factor that must be considered.

Litter and soil biodiversity jointly drive ecosystem functions.

The decomposition of litter and the supply of nutrients into and from the soil are two fundamental processes through which the above- and belowground world interact. Microbial biodiversity, and especially that of decomposers, plays a key role in these processes by helping litter decomposition. Yet the relative contribution of litter diversity and soil biodiversity in supporting multiple ecosystem services remains virtually unknown. Here we conducted a mesocosm experiment where leaf litter and soil biodiversity were manipulated to investigate their influence on plant productivity, litter decomposition, soil respiration, and enzymatic activity in the littersphere. We showed that both leaf litter diversity and soil microbial diversity (richness and community composition) independently contributed to explain multiple ecosystem functions. Fungal saprobes community composition was especially important for supporting ecosystem multifunctionality (EMF), plant production, litter decomposition, and activity of soil phosphatase when compared with bacteria or other fungal functional groups and litter species richness. Moreover, leaf litter diversity and soil microbial diversity exerted previously undescribed and significantly interactive effects on EMF and multiple individual ecosystem functions, such as litter decomposition and plant production. Together, our work provides experimental evidence supporting the independent and interactive roles of litter and belowground soil biodiversity to maintain ecosystem functions and multiple services.

Impact of green manure and weeds on selected soil health indicators in an organic grain cropping system in Nova Scotia

The green manure residual effect on soil health 2 years later in crop rotation is understudied. Little is known about weed biomass impact on soil microbial communities or their interactions. A Colchester County, NS, Canada, organic grain research trial during 2016–2017 comprised 2 or 3-year rotations with or without green manure crop prior to wheat, and then soybeans. Fall soil sampling was conducted both years. The soybean phase of the crop rotation was managed as weedy or non-weedy. Weedy soil showed significantly increased soil respiratory activity and fungal microbial biomass. Green manure treatments did not significantly influence soil health indicators.

Miscanthus x giganteus stress tolerance and phytoremediation capacities in highly diesel contaminated soils

Second generation biofuel crop Miscanthus x giganteus (Mxg) was studied as a candidate for petroleum hydrocarbons (PHs) contaminated soil phytomanagement. The soil was polluted by diesel in wide concentration gradient up to 50 g⋅kg−1 in an ex-situ pot experiment. The contaminated soil/plant interactions were investigated using plant biometric and physiological parameters, soil physico-chemical and microbial community's characteristics. The plant parameters and chlorophyll fluorescence indicators showed an inhibitory effect of diesel contamination; however much lower than expected from previously published results. Moreover, lower PHs concentrations (5 and 10 g⋅kg−1) resulted in positive reinforcement of electron transport as a result of hormesis effect. The soil pH did not change significantly during the vegetation season. The decrease of total organic carbon was significantly lower in planted pots. Soil respiration and dehydrogenases activity increased with the increasing contamination indicating ongoing PHs biodegradation. In addition, microbial biomass estimated by phospholipid fatty acids increased only at higher PHs concentrations. Higher dehydrogenases values were obtained in planted pots compared to unplanted. PHs degradation followed the first-order kinetics and for the middle range of contamination (10–40 g⋅kg−1) significantly lower PHs half-lives were determined in planted than unplanted soil pointing on phytoremediation. Diesel degradation was in range 35–70 % according to pot variant. Results confirmed the potential of Mxg for diesel contaminated soils phytomanagement mainly in PHs concentrations up to 20 g⋅kg−1 where phytoremediation was proved, and biomass yield was reduced only by 29 %.

Soil polluted with nano ZnO reveals unstable bacterial communities and decoupling of taxonomic and functional diversities

Due to relentless production and disposal of nano zinc oxide (nZnO), it has become critical to comprehend the serious risks large-scale accumulation of nZnO pose to bacterial communities in soil. The primary objective was to evaluate the changes in bacterial community structure and associated functional pathways through predictive metagenomic profiling and subsequent validation through Quantitative Realtime PCR in soil spiked with nZnO (0, 50, 200, 500 and 1000 mg Zn kg−1) and similar levels of bulk ZnO (bZnO). The results revealed that soil microbial biomass-C, -N, -P, soil respiration and enzyme activities decreased markedly at higher ZnO levels. The alpha diversity decreased with increasing ZnO level, with more impact under nZnO, while beta diversity analyses indicated a distinct dose- dependent separation of bacterial communities. The dominant taxa including Proteobacteria, Bacterioidetes, Acidobacteria and Planctomycetes significantly increased in abundance, while Firmicutes, Actinobacteria and Chloroflexi decreased in abundance with elevated nZnO and bZnO levels. Redundancy analysis indicated that changes in bacterial community structure instilled a greater dose- rather than size- specific response on key microbial parameters. Predicted key functions did not show a dose- specific response, and at 1000 mg Zn kg−1, methane metabolism as well as starch and sucrose metabolism were attenuated, while functions involving two component systems and bacterial secretion systems were enhanced under bZnO indicating better stress avoidance mechanism than under nZnO. Realtime PCR and microbial endpoint assays confirmed the metagenome derived taxonomic and functional data, respectively. Taxa and functions that varied substantially under stress were established as bioindicators to predict nZnO toxicity in soils. Taxon-function decoupling indicated that the soil bacterial communities deployed adaptive mechanisms under high ZnO, with lesser buffering capacity and resilience of communities under nZnO.

One thousand soils for molecular understanding of belowground carbon cycling

While significant progress has been made in understanding global carbon (C) cycling, the mechanisms regulating belowground C fluxes and storage are still uncertain. New molecular technologies have the power to elucidate these processes, yet we have no widespread standardized implementation of molecular techniques. To address this gap, we introduce the Molecular Observation Network (MONet), a decadal vision from the Environmental Molecular Sciences Laboratory (EMSL), to develop a national network for understanding the molecular composition, physical structure, and hydraulic and biological properties of soil and water. These data are essential for advancing the next generation of multiscale Earth systems models. In this paper, we discuss the 1000 Soils Pilot for MONet, including a description of standardized sampling materials and protocols and a use case to highlight the utility of molecular-level and microstructural measurements for assessing the impacts of wildfire on soil. While the 1000 Soils Pilot generated a plethora of data, we focus on assessments of soil organic matter (SOM) chemistry via Fourier-transform ion cyclotron resonance-mass spectrometry and microstructural properties via X-ray computed tomography to highlight the effects of recent fire history in forested ecosystems on belowground C cycling. We observed decreases in soil respiration, microbial biomass, and potential enzyme activity in soils with high frequency burns. Additionally, the nominal oxidation state of carbon in SOM increased with burn frequency in surface soils. This results in a quantifiable shift in the molecular signature of SOM and shows that wildfire may result in oxidation of SOM and structural changes to soil pore networks that persist into deeper soils.

Effect of In-Situ Oxidation Method on Soil Biological Properties in Total Petroleum Hydrocarbon Contaminated Soil

Total petroleum hydrocarbon (TPH) is one of the main pollutant in soil environment and oxidation treatment method using hydrogen peroxide (H2O2) is common for TPH remediation in soil. The main objective of this research was to monitor change of soil biological properties including soil respiration (SR) and soil enzyme activity in TPH contaminated soil after oxidation treatment. Laboratory batch experiment was conducted to simulate field treatment. Five percent of H2O2 was applied to TPH contaminated soil and soil biological properties was monitored at 3, 7, and 11 days after H2O2 application. Result showed that reduction efficiency of TPH was 64.8% after 11 days and SR rate was increased to 58.4% as TPH was reduced to 64.8% after 11 days. However, soil enzyme activity was not significantly increased and even dehydrogenase and urease activity were decreased to 59.0 and 56.3% after H2O2 application. This result might indicate that certain period is necessary to recover nutrient cycle in soil after remediation. In addition, long time of monitoring might be necessary to understand microbial activity for nutrient utilization in soil.Schematic diagram of remediation experiment for TPH contaminated soil and change of biological properties.

Comparison of Physicochemical and Biological Soil Properties in Organic and Conventional Upland Fields

Application of organic farming system has been increased recently but change of soil properties due to organic farming system has not been thoroughly studied. The main purpose of this study was to compare physicochemical and biological soil properties between conventional and organic farming system and to identify the most affected soil parameters for two different farming system. Soil samples were collected from upland fields that have been using conventional or organic farming system for over five years. Then, physicochemical and biological soil properties were determined, including bulk density, porosity, pH, electrical conductivity (EC), cation exchange capacity (CEC), soil organic matter, total nitrogen (T-N), available phosphorus, soil respiration, and soil enzyme activities. For soil physical perspective, soils from organic farming system had lower bulk density and higher porosity values than conventional farming system. This result indicate that organic farming system had beneficial effect on soil physical properties. In case of soil chemical properties, the available phosphorus content in soil from conventional farming system was higher than in organic farming system probably due to the continuous use of inorganic fertilizers containing phosphorus in the arable area. For soil biological properties, β-glucosidase and phosphatase activities were higher under conventionally managed soils than organic farming system. Overall, physicochemical and biological soil properties can be varied depending on differently managed farming system and long terms of monitoring is necessary for understanding the change of soil properties between organic and conventional farming system.Soil properties including a) bulk density, b) soil organic matter content, c) β-glucosidase activity, and d) urease activity (CF, conventional farming; OF, organic farming).