Resolution Fourier Transform Ion Cyclotron Research Articles

Photochemical Release of Dissolved Organic Nitrogen from Algal Detritus and Sediment Particles in Lake Taihu, China

Solar irradiation in aquatic systems can induce the conversion of substances from the solid to the dissolved phase (photodissolution). Yet, the photochemical release of dissolved organic nitrogen (DON) from internal particles in lakes remains largely unknown. In this study, suspensions of algal detritus and sediment particles from a shallow eutrophic lake were exposed to simulated solar irradiation, and the release and compositional changes of dissolved organic matter were explored by measuring their UV–Visible absorption spectroscopy and ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS). The photochemical release of inorganic nitrogen during the incubations was also investigated. Results showed that light irradiation induced stronger dissolved organic carbon and DON production in the algal detritus suspensions, with release rates of 1.17 mg C L−1 h−1 and 0.14 mg N L−1 h−1, respectively, at an algal detritus concentration of 0.1 dry g L−1. Light irradiation also induced compositional changes of DON in both algal and sediment suspensions. A larger number of DON molecules with lower molecular weight were continuously released in the algal suspensions, e.g., the total number of DON formulas increased from 1349 to 4135 during an 8 h irradiation. In contrast, upon irradiation of sediment suspensions, DON showed decreased molecular diversity and increased aromaticity. The photochemical release of ammonium (photoammonification) was also higher in the algal suspensions with a rate of 0.015 mg N L−1 h−1, which may contribute to the eutrophication of the lake. This study provides new molecular insights into the photochemical release of DON from typical internal particles in eutrophic lakes.

Discriminative Behavior of Cyclodextrin Polymers against Dissolved Organic Matter: Role of Cavity Size and Sorbate Properties.

Cyclodextrin polymers (CDPs) are promising next-generation adsorbents in water purification technologies. The selectivity of the polymer derivate cross-linked with tetrafluoroterephthalonitrile (TFN-CDP) for nonionic and cationic micropollutants (MPs) over dissolved organic matter (DOM) renders the adsorbent also attractive for many analytical applications. The molecular drivers of the observed selectivity are, nonetheless, not yet fully understood. To provide new insights into the sorption mechanism, we (i) synthesized TFN-CDPs with different cavity sizes (α-, β-, γ-CDP); (ii) assessed their extraction efficiencies for selected nonionic MPs in competition with different DOM size fractions (<1, 1-3, 3-10, >10 kDa) to test for size-selectivity; and (iii) performed nontargeted, ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry analysis on CDP-extracted DOM compounds (<1 kDa) to probe for molecular sorbate properties governing their selective sorption. First, no evidence of size-selectivity was obtained through either the different CD cavity sizes (i) or the two independent approaches (ii) and (iii). Second, we found a dominant impact of sorbate oxygenation and polarity on the extraction of DOM and MPs, respectively, with relatively oxygen-poor/nonpolar molecules favorably retained on all α-, β-, and γ-CDP. Third, our data indicates exclusion of an anionic matrix, such as carboxylic acids, but preferential sorption of cationic nitrogen-bearing DOM, pointing at repulsive and attractive forces with the negatively charged cross-linker as a likely reason. Therefore, we ascribe TFN-CDP's selectivity to nonpolar and electrostatic interactions between MPs/DOM and the polymer building blocks. These molecular insights can further aid in the optimization of efficient and selective sorbent design for environmental and analytical applications.

Molecular characteristics and potential source of urban PM2.5-bound water-soluble organic matter in Shanghai during springtime

Water-soluble organic matter (WSOM) is complicated component in atmospheric fine particulate matter (PM2.5) and has attracted increasing attentions due to their effects on air quality, climate change, and human health. In this study, the molecular characteristics and potential source of PM2.5-bound water-soluble organic matter in Shanghai during springtime were investigated using ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometer (FT-ICR MS) coupled with electrospray ionization (ESI) source in negative ion mode. A total of 2537 monoisotopic molecular formulas were assigned in WSOM, and CHO, CHON, CHOS and CHNOS compounds were main components. Highly unsaturated CHO (DBE = 5.01−7.30) and CHON (DBE = 3.66−10.1) compounds were found in good weather days, while the highly oxygenated multifunctional CHOS compounds (O/C = 0.50−0.88) increased in slightly polluted days. Van Krevelen diagrams revealed that carbohydrates, lignin species, and protein species were the most abundant classes in all samples, which their relative abundance accounted for 81.8%. Comparison of our results with previously published data on atmospheric PM2.5 indicated that the biogenic aerosol and local industrial emission presented a larger impact on molecular compositions of WSOM in this region. These findings present a comprehensive overview of WSOM in Shanghai, which helps to understand their characteristics and sources.

Unsaturated Fatty Acids Enhance Aqueous Atmospheric Oxidation Ability by Producing Oxygen‐Containing Radicals in Fog Droplets

AbstractThe surface of atmospheric aqueous aerosol is covered with an organic film. However, there have been limited studies about the photochemical process between the organic coating and aqueous samples such as fogwater, which contains light absorbing brown carbon (BrC). Here, the interactional aging process between unsaturated fatty acids and aqueous samples was performed by laboratory studies and field observations. On the one hand, glycine and alanine were selected as organic nitrogen‐containing compounds to form BrC with carbonyl compounds like glyoxal or methylglyoxal. Oleic acid was induced to form organic peroxy radicals through H‐abstraction by the excited triplet BrC or hydroxyl radical (OH). On the other hand, one type of aqueous formation pathway of Criegee intermediates (CIs) was proposed through the oxidation of oleic acid. CIs may be formed by OH addition to C=C bonds and scavenged by interfacial reactions. Results from ultra‐high resolution Fourier transform ion cyclotron resonance mass spectrometry show that the synergistic effect of oleic acid and OH may have a higher oxidative capacity than OH. Furthermore, our study demonstrates that oleic acid can improve the aqueous oxidation ability by producing oxygen‐containing radicals. These findings highlight that the formation of free radicals is greatly influenced by photochemical reactions, which further reveal the complexities of fog organic chemistry.

Ultramarathon induces metabolite changes associated with the pathophysiology of cardiovascular diseases- in silico and in vivo analysis

Abstract Funding Acknowledgements Type of funding sources: Public grant(s) – National budget only. Main funding source(s): National Science Centre (NCN) and Internal source of Medical University of Warsaw. Introduction Regular physical exercise is analogous to improved cardiovascular health and increased longevity. However, if in excess it can act as a double edged sword. Acute bouts of extreme physical activity trigger complex molecular responses reflected by changes in inflammatory markers and metabolic pathways that are believed to yield detrimental effects on the cardiovascular system (CVS)[1]. Purpose We aimed to assess the effects of high-intensity and long-lasting exercise prototype (100km run) on the metabolomic changes in a unique population of high-level long-term ultra-marathon runners. Methods Plasma samples were collected from ultramarathon runners (n=22) with 2-time points: before and after the run (Completion (100 km) or exhaustion (52 - 91 km, median 74 km)). For untargeted metabolomic analysis we used ultra-high resolution Fourier-Transform Ion Cyclotron Resonance Mass Spectrometry with an electrospray ion source in direct injection. Mass spectra were analyzed by T-Rex2D algorithm in the MetaboScape5.0. Identified compounds were ontologically analyzed using MetaboAnalystR. MetscapeCytoscape plugin was used for metabolite-gene interaction analysis and gene lists were obtained from Biomart and DisGeNet. Results Mann-Whitney test (FDR&amp;lt;0.05) identified 1601 up and 1030 downregulated metabolites with a at least 2 fold of difference after high-intensity run. Enrichment analysis showed that the top pathways affected by analyzed metabolites were the TCA cycle (FDR=0.0442), metabolism of; Sphingolipids (p=0.00774), Glyoxylate and dicarboxylate (p=0.0249) and Butanoate (p=0.0352). Top disease phenotypes associated with differentially regulated metabolites were critical illness (major trauma, severe septic shock, or cardiogenic shock) (p=0.00154) and multiple CVS-related diseases (Fig1). Top after the run up-regulated metabolites identified in the study included heart failure associated acetylcarnitines[2] CAR(14:2) (log2FC=11.57; AUC=0.97), Dodecanoylcarnitine (2.00;0.960), 9-Decenoylcarnitine (1.78;0.95), CAR(DC8:0) (14.99;0.94), but also 2-Carboxy-5,7-dimethyl-4-octanolide (8.04;0.98), Methylmalonic acid (9.33;0.96) and cardiotoxic Cyclophosphamide (16.29;0.940)[3]. Top down-regulated metabolites after the run included potentially cardio-protective Gamma Glutamylglutamic acid (log2FC=-1.81; AUC=0.85), Fructose 1,6-bisphosphate (-2.42;0.88)[4], Oleamide (-1.82;0.86) and gamma-Glutamylglycine (-7.98;0.85). Interaction network analysis focused on genes associated with CVS identified atherosclerosis/ obesity-related Phospholipase A2 Group IB (PLA2G1B) as potentially the most affected gene by analyzed metabolites (Fig2). Conclusion Results show a twofold post run increase in metabolites that are both potential markers for acute exercise and that are strongly associated with CV diseases. This calls for consideration of the detrimental effects of excessive exercise and implementation of monitoring in amateur athletes.

Characterization of modified methylaluminoxane by ion mobility spectrometry mass spectrometry and ultra-high resolution Fourier-transform ion cyclotron resonance mass spectrometry

High resolution mass spectrometry and ion mobility spectrometry with paraffin inert ASAP provide valuable information on the structure of modified methylaluminoxane (MMAO).

Molecular-level evidence of early lipid transformations throughout oceanic depths

Our understanding of lipid biogeochemistry of the ocean’s interior is still in its infancy. Here we focus on early lipid transformation and the formation of lipid degradation products in the NE Atlantic Ocean (49.0°N, 16.5°W). We employed high resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS), a method that allows observation and elemental composition assignment of thousands of lipids in a single sample. Using these data, we infer molecular-level changes that occur during lipid transformation in the oceanic water column to shed new light on early lipid transformation processes and the formation of lipid decomposition intermediates, here termed CHO compounds (i.e., lipid-derived species that contain carbon, hydrogen and oxygen in their molecular formula). We considered the distribution of molecular rings and/or double bonds (DBE), H/C and O/C ratios, molecular diversity based on the number of mass spectral signals for monoisotopic species, and carbon number in CHO molecules. Data are elaborated for the four ocean zones, the epipelagic, mesopelagic, bathypelagic and abyssal. The highest molecular diversity characterizes CHO compounds associated with the epipelagic zone, which is explained by numerous and diverse planktonic communities inhabiting the epipelagic and by the effects of both biotic and abiotic processes on lipid transformation. Lipid transformations include crosslinking (condensation), partial degradation or fragmentation, double bond reduction, oxidation, hydrogenation, dehydrogenation and cyclization. Crosslinking likely results in a unimodal distribution of carbon number of CHO compounds, in contrast to cell lipids (referred to as Reported lipids based on the Lipid Maps Database), which have a bimodal distribution of carbon number. CHO compounds that appear to be formed by fragmentation (decrease of the number of C atoms) and ring/double bond reduction were more stable to further transformation and remained longer in the water column, i.e., these compounds were transferred deeper into the water column. Low unsaturation and fast transport to depth promotes CHO compound preservation in the water column. Dehydrogenation leads to increased unsaturation (average DBE up to 21.3), condensation, and cyclization, resulting in high molecular weight compounds with a high degree of unsaturation. Our data demonstrate that lipids with cyclic structures are more refractory than those with acyclic structures. The formation of aromatic structures is not a significant process during early lipid transformation in the oceanic water column.

A Use of Tritium-Labeled Peat Fulvic Acids and Polyphenolic Derivatives for Designing Pharmacokinetic Experiments on Mice.

Natural products (e.g., polyphenols) have been used as biologically active compounds for centuries. Still, the mechanisms of biological activity of these multicomponent systems are poorly understood due to a lack of appropriate experimental techniques. The method of tritium thermal bombardment allows for non-selective labeling and tracking of all components of complex natural systems. In this study, we applied it to label two well-characterized polyphenolic compounds, peat fulvic acid (FA-Vi18) and oxidized lignin derivative (BP-Cx-1), of predominantly hydrophilic and hydrophobic character, respectively. The identity of the labeled samples was confirmed using size exclusion chromatography. Using ultra-high resolution Fourier transform ion cyclotron resonance mass spectrometry (FT ICR MS), key differences in the molecular composition of BP-Cx-1 and FA-Vi18 were revealed. The labeled samples ([3H]-FA-Vi18 (10 mg/kg) and [3H]-BP-Cx-1 (100 mg/kg)) were administered to female BALB/c mice intravenously (i.v.) and orally. The label distribution was assessed in blood, liver, kidneys, brain, spleen, thymus, ovaries, and heart using liquid scintillation counting. Tritium label was found in all organs studied at different concentrations. For the fulvic acid sample, the largest accumulation was observed in the kidney (Cmax 28.5 mg/kg and 5.6 mg/kg, respectively) for both routes. The organs of preferential accumulation of the lignin derivative were the liver (Cmax accounted for 396.7 and 16.13 mg/kg for i.v. and p.o. routes, respectively) and kidney (Cmax accounted for 343.3 and 17.73 mg/kg for i.v. and p.o. routes, respectively). Our results demonstrate that using the tritium labeling technique enabled successful pharmacokinetic studies on polyphenolic drugs with very different molecular compositions. It proved to be efficient for tissue distribution studies. It was also shown that the dosage of the polyphenolic drug might be lower than 10 mg/kg due to the sensitivity of the 3H detection technique.

Natural organic matter composition and nanomaterial surface coating determine the nature of platinum nanomaterial-natural organic matter corona

Natural organic matter corona (NOM corona) is an interfacial area between nanomaterials (NMs) and the surrounding environment, which gives rise to NMs' unique surface identity. While the importance of the formation of natural organic matter (NOM) corona on engineered nanomaterials (NMs) to NM behavior, fate, and toxicity has been well-established, the understanding of how NOM molecular properties affect NOM corona composition remains elusive due to the complexity and heterogeneity of NOM. This is further complicated by the variation of NOMs from different origins. Here we use eight NOM isolates of different molecular composition and ultrahigh resolution Fourier-transform ion cyclotron resonance-mass spectrometry (ESI-FT-ICR-MS) to determine the molecular composition of platinum NM-NOM corona as a function of NOM composition and NM surface coating. We observed that the composition of PtNM-NOM corona varied with the composition of the original NOM. The percentage of NOM formulas that formed PVP-PtNM-NOM corona was higher than those formed citrate-PtNM-NOM corona, due to increased sorption of NOM formulas, in particular condensed hydrocarbons, to the PVP coating. The relative abundance of heteroatom formulas (CHON, CHOS, and CHOP) was higher in the PVP-PtNM-NOM corona than in citrate-PtNM-corona which was in turn higher than those in the original NOM isolate, indicating preferential partitioning of heteroatom-rich molecules to NM surfaces. The relative abundance of CHO, CHON, CHOS, CHOP and condensed hydrocarbons in PtNM-NOM corona increased with their increase in NOM isolates. Furthermore, PtNM-NOM corona is rich with compounds with high molecular weight. This study demonstrates that the composition and properties of PtNM-NOM corona depend on NOM molecular properties and PtNM surface coating. The results here provide evidence of molecular interactions between NOM and NMs, which are critical to understanding NM colloidal properties (e.g., surface charge and stability), interaction forces (e.g., van der Waals and hydrophobic), environmental behaviors (e.g., aggregation, dissolution, sulfidation, etc.), and biological effects (e.g., uptake, bioaccumulation, and toxicity).

Plastic Formulation is an Emerging Control of Its Photochemical Fate in the Ocean.

Sunlight exposure is a control of long-term plastic fate in the environment that converts plastic into oxygenated products spanning the polymer, dissolved, and gas phases. However, our understanding of how plastic formulation influences the amount and composition of these photoproducts remains incomplete. Here, we characterized the initial formulations and resulting dissolved photoproducts of four single-use consumer polyethylene (PE) bags from major retailers and one pure PE film. Consumer PE bags contained 15-36% inorganic additives, primarily calcium carbonate (13-34%) and titanium dioxide (TiO2; 1-2%). Sunlight exposure consistently increased production of dissolved organic carbon (DOC) relative to leaching in the dark (3- to 80-fold). All consumer PE bags produced more DOC during sunlight exposure than the pure PE (1.2- to 2.0-fold). The DOC leached after sunlight exposure increasingly reflected the 13C and 14C isotopic composition of the plastic. Ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry revealed that sunlight exposure substantially increased the number of DOC formulas detected (1.1- to 50-fold). TiO2-containing bags photochemically degraded into the most compositionally similar DOC, with 68-94% of photoproduced formulas in common with at least one other TiO2-containing bag. Conversely, only 28% of photoproduced formulas from the pure PE were detected in photoproduced DOC from the consumer PE. Overall, these findings suggest that plastic formulation, especially TiO2, plays a determining role in the amount and composition of DOC generated by sunlight. Consequently, studies on pure, unweathered polymers may not accurately represent the fates and impacts of the plastics entering the ocean.

Copper-hydride nanoclusters with enhanced stability by N-heterocyclic carbenes

Copper-hydrides have been intensively studied for a long time due to their utilization in a variety of technologically important chemical transformations. Nevertheless, poor stability of the species severely hinders its isolation, storage and operation, which is worse for nano-sized ones. We report here an unprecedented strategy to access to ultrastable copper-hydride nanoclusters (NCs), namely, using bidentate N-heterocyclic carbenes as stabilizing ligands in addition to thiolates. In this work, a simple synthetic protocol was developed to synthesize the first large copper-hydride nanoclusters (NCs) stabilized by N-heterocyclic carbenes (NHCs). The NC, with the formula of Cu31(RS)25(NHC)3H6 (NHC = 1,4-bis(1-benzyl-1H-benzimidazol-1-ium-3-yl) butane, RS = 4-fluorothiophenol), was fully characterized by high resolution Fourier transform ion cyclotron resonance mass spectrum, nuclear magnetic resonance, ultra-violet visible spectroscopy, density functional theory (DFT) calculations and single-crystal X-ray crystallography. Structurally, the title cluster exhibits unprecedented Cu4 tetrahedron-based vertex-sharing (TBVS) superstructure (fusion of six Cu4 tetrahedra). Moreover, the ultrahigh thermal stability renders the cluster a model system to highlight the power of NHCs (even other carbenes) in controlling geometrical, electronic and surface structure of polyhydrido copper clusters.

The importance of nutrients for microbial priming in a bog rhizosphere

Wetlands host anaerobic microbes which convert organic carbon into methane (CH4), a powerful greenhouse gas. Wetland plants can influence which carbon compounds are available for microbial processing by exuding freshly fixed carbon from their roots. Exudation of carbon from plant roots can trigger microbial priming: the process of new carbon stimulating the microbial community into processing more soil carbon than they otherwise would have. This study utilized high resolution Fourier transform ion cyclotron mass spectrometry (FT-ICR-MS) analysis to probe the composition of soil organic compounds from the rhizosphere of Carex aquatillis, a common wetland sedge, which is known to have stimulated microbial priming within peat soil. The goal was to identify what types of molecules were created or lost during microbial priming in the wetland rhizosphere and thus advance mechanistic understanding of the process. FT-ICR-MS analysis demonstrated that more microbial transformations of carbon occurred among water-soluble compounds than among hydrophobic compounds, but that some hydrophobic compounds were processed. Crucially for understanding microbial priming, the root exudates triggered increased processing of high molecular weight molecules regardless of nutrient content but processed low molecular weight compounds only if they contained nitrogen or sulfur, essential nutrients for plant growth. The importance of sulfur in determining molecular utilization is noteworthy because priming literature typically focuses on nitrogen-mining. The fact that some molecules were processed and others were not is evidence for a selective priming effect in which some carbon compounds with specific properties are used at an increased rate, while others are left unaltered.

Tandem surface-induced dissociation of protein complexes on an ultrahigh resolution platform

We describe instrumentation for conducting tandem surface-induced dissociation (tSID) of native protein complexes on an ultrahigh resolution Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometer. The two stages of SID are accomplished with split lenses replacing the entrance lenses of the quadrupole mass filter (stage 1, referred to herein as SID-Q) and the collision cell (stage 2, Q-SID). After SID-Q, the scattered projectile ions and subcomplexes formed in transit traverse the pre-filter prior to the mass-selecting quadrupole, providing preliminary insights into the SID fragmentation kinetics of noncovalent protein complexes. The isolated SID fragments (subcomplexes) are then fragmented by SID in the collision cell entrance lens (Q-SID), generating subcomplexes of subcomplexes. We show that the ultrahigh resolution of the FT-ICR can be used for deconvolving species overlapping in m/z, which are particularly prominent in tandem SID spectra due to the combination of symmetric charge partitioning and narrow product ion charge state distributions. Various protein complex topologies are explored, including homotetramers, homopentamers, a homohexamer, and a heterohexamer.

Antioxidant Activity and Phenolic Content of Marine Dissolved Organic Matter and Their Relation to Molecular Composition

The potential of marine dissolved organic matter (DOM) for free radical scavenging has been extensively evaluated, however, the quantitative assessment of the antioxidant potential has been recently measured for the first time. The linkage of the DOM antioxidant potential to its molecular composition has not yet been examined. Following this line, this article takes a step forward by assessing, throughout a polarity-mediated fractionation, (1) the antioxidant capacity and phenolic content and (2) the molecular characterization of DOM in a more exhaustive manner. (3) The DOM antioxidant potential and phenolic content was linked to the molecular composition of DOM, which was molecularly characterized using ultrahigh resolution Fourier transform Ion Cyclotron Resonance mass spectrometry (FT-ICR MS). Antioxidant activity and phenolic content were quantified by the free radical 2,2’-azino-bis-3-ethylbenzothiazoline-6-sulfonic acid (ABTS⋅) and the Folin-Ciocalteu methods, respectively. We considered three types of different natural DOM samples: the deep North Pacific Ocean, the oligotrophic surface of the North Pacific Ocean and porewater from the sulfidic tidal flats of the Wadden Sea. Bulk porewater and its individual polarity fractions presented the highest antioxidant activity and phenolic content. DOM from the water column samples had lower antioxidant activity and phenolic content than porewater, but exceeded what it is commonly found in macroalgae, microalgae, fruits and vegetables with cosmeceutical purposes. Our values were similar to published values for terrestrial DOM. The variations in bioactivity were dependent on polarity and molecular composition. The high resolution and high mass accuracy used to determine the molecular composition of marine DOM and the chemometric and multistatistical analyses employed have allowed to distinguish molecular categories that are related to the bioactive potential. As a future perspective, we performed cytotoxicity tests with human cells and propose marine DOM as a natural ingredient for the development of cosmeceutical products.

Proanthocyanidin Structural Details Revealed by Ultrahigh Resolution FT-ICR MALDI-Mass Spectrometry, 1H-13C HSQC NMR, and Thiolysis-HPLC-DAD.

Proanthocyanidins (condensed tannins) are important in food chemistry, agriculture, and health, driving demand for improvements in structure determination. We used ultrahigh resolution Fourier transform-ion cyclotron resonance mass spectrometry (FT-ICR MS) methods to determine the exact composition of individual species in heterogeneous mixtures of proanthocyanidin polymers from Sorghum bicolor grain and Neptunia lutea leaves. Fragmentation patterns obtained with FT-ICR ESI MS-MS (electrospray ionization) confirmed structural details from thiolysis-high-performance liquid chromatography (HPLC)-diode array detection (DAD) and 1H-13C heteronuclear single quantum coherence (HSQC) NMR. We found that A-type linkages were characteristic of shorter polymers in predominantly B-linked proanthocyanidin. We suggest that supramolecular complex formation between proanthocyanidins and matrix components such as 2,5-dihydroxybenzoic acid was responsible for anomalous 152 dalton peaks, incorrectly assigned as 3-O-galloylation, when using FT-ICR matrix-assisted laser desorption ionization (MALDI-MS). Our data illustrate the power of the ultrahigh resolution FT-ICR methods but include the caveat that MALDI-MS must be paired with complementary analytical tools to avoid artifacts.

Correlation between the Antimicrobial Activity and Metabolic Profiles of Cell Free Supernatants and Membrane Vesicles Produced by Lactobacillus reuteri DSM 17938.

The aim of the work is to assess the antimicrobial activities of Cell Free Supernatants (CFS) and Membrane Vesicles (MVs), produced by Lactobacillus reuteri DSM 17938, versus Gram-positive and Gram-negative bacteria and investigate their metabolic profiles. The Minimum Inhibitory Concentration was determined through the broth microdilution method and cell proliferation assay while the Minimum Bactericidal Concentration was determined by Colony Forming Units counts. The characteristics of the antimicrobial compounds were evaluated by pH adjustments, proteinase treatment, and size fractionation of the CFS. The cytotoxicity of CFS was tested on two human cell lines. A detailed snapshot of the L. reuteri metabolism was attained through an untargeted metabolic profiling by means of high resolution Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR MS) coupled with Electrospray Ionization Source (ESI). The results showed (i) a greater efficacy of CFS and its fractions towards Gram-negative compared to Gram-positive bacteria; (ii) an antimicrobial effect related to pH-dependent compounds but not to MVs; (iii) a molecular weight < 3 KDa as well as an a non-proteinaceous nature of the antimicrobial compounds; and (iv) more than 200 and 500 putative metabolites annotated in MVs and supernatants, covering several classes of metabolites, including amino acids, lipids, fatty and organic acids, polyalcohols, nucleotides, and vitamins. Some putative compounds were proposed not only as characteristic of specific fractions, but also possibly involved in antimicrobial activity.

A feasible strategy to improve confident elemental composition determination of compounds in complex organic mixture such as natural organic matter by FTICR-MS without internal calibration

Confident elemental composition determination of compounds in complex samples such as natural organic matter (NOM) by ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) is challenging due to the interference between multiple components in these samples during detection. Here the performance of Solarix 15T-FTICR-MS in terms of accurate relative natural isotope abundance (RIA) and mass measurements for elemental composition determination of compounds in complex samples such as NOM was systematically evaluated. The optimal sweep excitation power values ranging from 20% to 22% was found to significantly diminish the underestimation of RIA measurement for 13C1 peaks of NOM components by FTICR-MS. Random error was found to be one of the main sources for the RIA errors of 13C1 peaks with S/N ratios <25. The mean averaged RIA errors of less than 10% could be obtained by averaging the measured RIAs of each 13C1 peaks in five replicated runs. By adjusting the total ion abundance of NOM complex sample between 3.8-E7 and 1.4-E8 which was simultaneously similar to that of external calibrant during detection, mass errors of lower than 1 ppm for NOM components with m/z lower than 700 Da could be obtained without internal calibration. Meanwhile, a linear correlation between mass errors of ions in NOM complex sample and their m/z values could be obtained. The mass error deviation derived from the linearity was firstly used as new criterion to reduce the number of false formula candidates. A novel strategy of combination of high mass accuracy, high spectral accuracy, and mass error deviation for elemental composition determination of unknown compounds in complex sample such as NOM by FTICR-MS was proposed and applied for different complex samples. Compared to the traditional method, about one fold increasement in the number of the unique formula assignments for measured ions was obtained by using our strategy.

Characterization of spirostanol glycosides and furostanol glycosides from anemarrhenae rhizoma as dual targeted inhibitors of 5-lipoxygenase and Cyclooxygenase-2 by employing a combination of affinity ultrafiltration and HPLC/MS

Background : Modulation of the arachidonic acid (AA) cascade via 5-lipoxygenase (5-LOX) and cyclooxygenase-2 (COX-2) represent the two major pathways for treatments of inflammation and pain. The design and development of inhibitors targeting both 5-LOX and COX-2 has gained increasing popularity. As evidenced, 5-LOX and COX-2 dual targeted inhibitors have recently emerged as the front runners of anti-inflammatory drugs with improved efficacy and reduced side effects. Natural products represent a rich resource for the discovery of dual targeted 5-LOX and COX-2 inhibitors. By combining affinity ultrafiltration and high-performance liquid chromatography-mass spectrometry (AUF-LC-MS), an efficient method was developed to identify spirostanol glycosides and furostanol glycosides as the 5-LOX/COX-2 dual inhibitors from saponins extract of Anemarrhenae Rhizoma (SEAR).Methods: A highly efficient method by combining affinity ultrafiltration and high-performance liquid chromatography-mass spectrometry (AUF-LC-MS) was first developed to screen and characterize the 5-LOX/COX-2 dual targeted inhibitors from SEAR. The structures of compounds in the ultrafiltrate were characterized by high resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS). In addition, in vitro 5-LOX/COX-2 inhibition assays and their dual expression in vivo were performed to confirm the inhibitory activities of the compounds screened by AUF-LC-MS. Molecular docking studies with the corresponding binding energy were obtained which fit nicely to both 5-LOX and COX-2 protein cavities and in agreement with our affinity studies.Results: A total of 5 compounds, timosaponin A-II, timosaponin A-III, timosaponin B-II, timosaponin B-III and anemarrhenasaponin I, were identified as potential 5-LOX/COX-2 dual targeted inhibitors with specific binding values > 1.5 and IC50 ≤ 6.07 μM.Conclusion: The present work demonstrated that spirostanol glycoside and furostanol glycoside were identified as two novel classes of dual inhibitors of 5-LOX/COX-2 enzymes by employing a highly efficient screening method of AUF-LC-MS. These natural products represent a novel class of anti-inflammatory agents with the potential of improved efficacy and reduced side effects.

An untargeted metabolomic approach for the putative characterization of metabolites from Scenedesmus obliquus in response to cadmium stress

Cadmium (Cd) is a widespread contaminant in aquatic systems and has a variety of toxicological implications on freshwater microorganisms. In this study, the green algae Scenedesmus obliquus was exposed to increasing Cd concentrations that inhibited growth by 20% (12.6 μmol L−1), 30% (39.8 μmol L−1) and 40% (83.2 μmol L−1) and the metabolite profiles of released and cellular biomolecules were explored using an untargeted direct infusion high resolution Fourier transform ion cyclotron resonance mass spectrometry approach. In Cd untreated cultures, intrinsic differences in composition existed between released biomolecules and freeze-dried cells. Based on putatively characterized compound groups, a greater proportion of Cys-GSH isomers and carboxyamides were present in exudates whereas sugar isomers and phosphonic acids comprised most cellular metabolites. In cultures exposed to 83.2 μmol L−1 Cd, an overall shift in metabolomic response across both released biomolecules and cellular components resulted in an increase of lipid-based esters, and Cys-GSH isomers. These two important metabolites are used in antioxidant defense mechanisms and reactive oxygen species prevention during cellular stress. The diversity of metabolites also decreased as Cd concentrations increased when compared to untreated cultures, suggesting that overall metabolites specialize upon metal stress. We show systemic shifts from sugar and carboxylic isomers to specialized proteins and lipid isomers to help S. obliquus cope with stress. These findings highlight the potential use of this green algae as a potential biosorbent and sheds light into the metabolomics of Cd toxicology and insights into microbial metal adaptation.

Real time monitoring of slow pyrolysis of polyethylene terephthalate (PET) by different mass spectrometric techniques

In the context of waste upgrading of polyethylene terephthalate (PET) by pyrolysis, this study presents three on-line mass spectrometric techniques with soft ionization for monitoring the emitted decomposition products and their thermal dependent evolution profiles. Pyrolysis experiments were performed using a thermogravimetric analyzer (TGA) under nitrogen atmosphere with a heating rate of 5 °C/min from 30 °C to 600 °C. Single-photon ionization (SPI at 118 nm/10.5 eV) and resonance enhanced multiple photon ionization (REMPI at 266 nm) were used with time-of-flight mass spectrometry (TOF-MS) for evolved gas analysis (TGA-SPI/REMPI-TOFMS). Additionally, the chemical signature of the pyrolysis products was investigated by atmospheric pressure chemical ionization (APCI) ultra high resolution Fourier Transform ion cyclotron resonance mass spectrometry (FT-ICR MS) which enables assignment of molecular sum formulas (TGA-APCI FT-ICR MS). Despite the soft ionization by SPI, the fragmentation of some compounds with the loss of the [O-CH = CH2] fragment is observed. The major compounds were acetaldehyde (m/z 44), benzoic acid (m/z 122) and a fragment of m/z 149. Using REMPI, aromatic species were selectively detected. Several series of pyrolysis products were observed in different temperature intervals, showing the presence of polycyclic aromatic hydrocarbons (PAHs), especially at high temperatures. FT-ICR MS data showed, that the CHO4 class was the most abundant compound class with a relative abundance of 45.5%. The major compounds detected with this technique corresponded to m/z 193.0495 (C10H9O4+) and 149.0233 (C8H5O3+). Based on detailed chemical information, bulk reaction pathways are proposed, showing the formation of both cyclic monomer/dimer and linear structures.