Increasing soil and water salinity threatens global agriculture, particularly affecting rice. This study investigated the residual effects of microbial biochar and nitrogen fertilizer in mitigating salt stress in paddy soil and regulating the biochemical characteristics of rice plants. Two rice varieties, Shuang Liang You 138 (SLY138), a salt-tolerant, and Jing Liang You 534 (JLY534), a salt-sensitive, were grown under 0.4 ds/m EC (S0) and 6.84 ds/m EC (S1) in a glass house under controlled conditions. Three types of biochar-rice straw biochar (BC), fungal biochar (BF), and bacterial biochar (BB)-were applied alongside two nitrogen (N) fertilizer rates (60 kg ha-1 and 120 kg ha-1) in a previous study. The required salinity levels were maintained in respective pots through the application of saline irrigation water. Results showed that residual effects of microbial biochars (BF and BB) had higher salt mitigation efficiency than sole BC. The combination of BB and N fertilizer (BB + N120) significantly decreased soil pH by 23.45% and Na+ levels by 46.85%, creating a more conducive environment for rice growth by enhancing beneficial microbial abundance and decreasing pathogenic fungi in saline soil. Microbial biochars (BF and BB) positively improved soil properties (physicochemical) and biochemical and physiological properties of plants, ultimately rice growth. SLY138 significantly had a less severe response to salt stress compared to JLY534. The mitigation effects of BB + N120 kg ha-1 were particularly favorable for SLY138. In summary, the combined residual effect of BF and BB with N120 kg ha-1, especially bacterial biochar (BB), played a positive role in alleviating salt stress on rice growth, suggesting its potential utility for enhancing rice yield in paddy fields.