Particulate Organic Carbon Remineralization Research Articles

Long-term sediment organic carbon remineralization in different seagrass and macroalgae habitats: implication for blue carbon storage

Seagrass and macroalgae beds are key blue carbon ecosystems in the ocean. However, coastal development and climate change are sparking a growing concern about the vulnerability of sediment organic carbon (OC) to remineralization after macrophyte perturbation. Thus, the aim of this study was to assess the potential of long-term remineralization of sediment OC stocks (1 year) in coastal vegetated habitats (i.e., seagrasses Zostera noltei and Cymodocea nodosa, macroalgae Caulerpa prolifera and unvegetated sediment) after complete disturbance of macrophyte meadows under conducive conditions to microorganisms growth (i.e., oxygen saturated, non-nutrient limitation, turbulence and dark). Leached dissolved organic carbon (DOC) from particulate organic carbon (POC) remineralization, carbonate dissolution and photo-reactivity of long-term persistent DOC were also evaluated. Our results evidenced that, sediment OC from Z. noltei and unvegetated habitats were entirely remineralized to CO2. However, sediment OC from C. nodosa and C. prolifera communities exhibited a significant fraction of recalcitrant OC, and therefore, a 42 and 46% of the sediment OC still remained after 1 year of culture, respectively. POC remineralization released relevant amounts of both labile and recalcitrant DOC, which showed low photo-reactivity. Finally, we discuss that the main argument to promote management, monitoring, and restoration programs for macrophytes is usually based on their sediment OC deposit, which favor larger species. The study presented here adds arguments to also include small macrophyte species, since their sediment OC may be highly labile and entirely remineralized to CO2 once these habitats are disturbed.

Cycling Rates of Particulate Organic Carbon Along the GEOTRACES Pacific Meridional Transect GP15

AbstractUnderstanding particle cycling processes in the ocean is critical for predicting the response of the biological carbon pump to external perturbations. Here, measurements of particulate organic carbon (POC) concentration in two size fractions (1–51 and >51 μm) from GEOTRACES Pacific meridional transect GP15 are combined with a POC cycling model to estimate rates of POC production, (dis)aggregation, sinking, remineralization, and vertical transport mediated by migrating zooplankton, in the euphotic zone (EZ) and upper mesopelagic zone (UMZ) of distinct environments. We find coherent variations in POC cycling parameters and fluxes throughout the transect. Thus, the settling speed of POC in the >51 μm fraction increased with depth in the UMZ, presumably due to higher particle densities at depth. The settling flux of total POC (>1 μm) out of the EZ was positively correlated with primary production integrated over the EZ; the highest export occurred in the subarctic gyre while the lowest occurred in the subtropical gyres. The ratio of POC settling flux to integrated primary production was low (<5%) along GP15, which suggests an efficient recycling of POC in the EZ in all trophic regimes. Specific rates of POC remineralization did not show clear variations with temperature or dissolved oxygen concentration, that is, POC recycling was apparently controlled by other factors such as microbial colonization and substrate lability. Particle cohesiveness, as approximated by the second‐order rate constant for particle aggregation, was negatively correlated with trophic regime: particles appeared more cohesive in low‐productivity regions than in high‐productivity regions.

A novel method to sample individual marine snow particles for downstream molecular analyses

AbstractThe ocean–atmosphere exchange of carbon largely depends on the balance between carbon export of particulate organic carbon (POC) as sinking marine particles, and POC remineralization by attached microbial communities. Despite the vast spectrum of types, sources, ages, shapes, and composition of individual sinking particles, they are usually considered as a bulk together with their associated microbial communities. This limits our mechanistic understanding of the biological carbon pump (BCP) and its feedback on the global carbon cycle. We established a method to sample individual particles while preserving their shape, structure, and nucleic acids by placing a jellified RNA‐fixative at the bottom of drifting sediment traps. Coupling imaging of individual particles with associated 16S rRNA analysis reveals that active bacterial communities are highly heterogenous from one particles origin to another. In contrast to lab‐made particles, we found that complex in situ conditions lead to heterogeneity even within the same particle type. Our new method allows to associate patterns of active prokaryotic and functional diversity to particle features, enabling the detection of potential remineralization niches. This new approach will therefore improve our understanding of the BCP and numerical representation in the context of a rapidly changing ocean.

Slow-sinking particulate organic carbon and its attenuation in the mesopelagic water of the South China Sea

Coastal acidification has been widely investigated in terms of its rationale and ecological effects in the last decade. However, the driving mechanism for acidification in open seawater, especially in mesopelagic water, is still poorly understood. Here, the sinking velocity and flux attenuation of particulate organic carbon (POC) were examined based upon the radioactive 210Po-210Pb tracer to reveal the remineralization of POC in the mesopelagic zone in the northeastern South China Sea (SCS). Overall, the profiles of 210Po followed those of 210Pb, lending support to the particle sinking controlled top-down deficits of 210Po. Using an inverse model, the sinking velocity of particles, for the first time in the SCS, was estimated to vary from 3 to 34 m d-1 with the mean value of 15 ± 9 m d-1, indicating that the slow sinking particles largely contribute to the POC flux in the SCS. Beneath the euphotic zone, a consistent descending of the sinking speed implied continuous remineralization of sinking POC in the twilight zone. A preliminary estimate revealed that 1.9-5.4 mmol-C m-2 d-1 remineralized back to carbon dioxide within 100-500 m, representing about 70% of the exported autochthonous POC from the euphotic zone. In 100-1000 m, 2.4-6.6 mmol-C m-2 d-1 (i.e., 84%) remineralized. Thus, the upper twilight zone (i.e., 100-500 m) is the dominant layer of POC remineralization, and POC-induced acidification could be unneglectable there. These results provided insights into the POC-induced acidification mechanism in the mesopelagic water, especially in the upper mesopelagic layer.

Early winter barium excess in the southern Indian Ocean as an annual remineralisation proxy (GEOTRACES GIPr07 cruise)

Abstract. The Southern Ocean (SO) is of global importance to the carbon cycle, and processes such as mesopelagic remineralisation that impact the efficiency of the biological carbon pump in this region need to be better constrained. During this study early austral winter barium excess (Baxs) concentrations were measured for the first time, along 30∘ E in the southern Indian Ocean. Winter Baxs concentrations of 59 to 684 pmol L−1 were comparable to those observed throughout other seasons. The expected decline of the mesopelagic Baxs signal to background values during winter was not observed, supporting the hypothesis that this remineralisation proxy likely has a longer timescale than previously reported. A compilation of available SO mesopelagic Baxs data, including data from this study, shows an accumulation rate of ∼0.9 µmol m−2 d−1 from September to July that correlates with temporally integrated remotely sensed primary productivity (PP) throughout the SO from data spanning ∼20 years, advocating for a possible annual timescale of this proxy. The percentage of mesopelagic particulate organic carbon (POC) remineralisation as calculated from estimated POC remineralisation fluxes over integrated remotely sensed PP was ∼2-fold higher south of the polar front (19 ± 15 %, n=39) than north of the polar front (10 ± 10 %, n=29), revealing the higher surface carbon export efficiency further south. By linking integrated remotely sensed PP to mesopelagic Baxs stock, we could obtain better estimates of carbon export and remineralisation signals within the SO on annual and basin scales.

Factors Controlling Acidification in Intermediate and Deep/Bottom Layers of the Japan/East Sea

AbstractMuch effort has been devoted to studying the absorption of anthropogenic CO2 by the surface and subsurface ocean, where surface seawater acidifies rapidly while the deep ocean was thought to respond to CO2 intrusion at longer time scales. However, recent studies have revealed rapid acidification of the deep Japan/East Sea, implying that ongoing changes in ocean dynamics are accelerating acidification at depth, and the controlling mechanisms have not been fully addressed. Using a multibox model of ocean circulation and carbonate chemistry, we demonstrate that a combination of reduced deep/bottom water formation and an increase in organic matter remineralization can best explain the observed pattern of rapid acidification in deep waters. In contrast, acidification in the intermediate layer is controlled by increased particulate organic carbon remineralization accompanied by intensified intermediate ventilation. Variations of ventilation and remineralization of particulate organic carbon dominating acidification in different layers of the water column need to be considered in future investigations.

Particulate biogenic barium tracer of mesopelagic carbon remineralization in the Mediterranean Sea (PEACETIME project)

Abstract. We report on the sub-basin variability in particulate organic carbon (POC) remineralization in the western and central Mediterranean Sea in late spring during the PEACETIME (ProcEss studies at the Air–sEa Interface after dust deposition in the MEditerranean sea) cruise. POC remineralization rates were estimated using the excess biogenic particulate barium (Baxs) inventories in the mesopelagic layers (100–1000 m depth) and compared with prokaryotic heterotrophic production (PHP). Baxs-based mesopelagic remineralization rates (MRs) ranged from 25±2 to 306±70 mgCm-2d-1. MRs were larger in the Algero-Provençal (ALG) Basin than in the Tyrrhenian (TYR) and Ionian (ION) basins. Our Baxs inventories and integrated PHP data also indicated that significant mesopelagic remineralization occurred down to 1000 m depth in the ALG Basin in contrast to the ION and TYR basins, where remineralization was mainly located above 500 m depth. We propose that the higher and deeper MRs in the ALG Basin were sustained by an additional particle export event driven by deep convection. The TYR Basin (in contrast to the ALG and ION basins) presented the impact of a previous dust event, as reflected by our particulate Al water column concentrations. The ION and TYR basins showed small-scale heterogeneity in remineralization processes, reflected by our Baxs inventories and integrated PHP data at the Tyrr long-duration station. This heterogeneity was linked to the mosaic of blooming and non-blooming patches reported in this area during the cruise. In contrast to the western Mediterranean Sea (ALG Basin), the central Mediterranean Sea (ION and TYR basins) showed lower remineralization rates restricted to the upper mesopelagic layer during the late spring PEACETIME cruise.

Illuminating Key Microbial Players and Metabolic Processes Involved in the Remineralization of Particulate Organic Carbon in the Ocean's Twilight Zone by Metaproteomics.

The twilight zone (from the base of the euphotic zone to the depth of 1,000 m) is the major area of particulate organic carbon (POC) remineralization in the ocean, and heterotrophic microbes contribute to more than 70% of the estimated remineralization. However, little is known about the microbial community and metabolic activity directly associated with POC remineralization in this chronically understudied realm. Here, we characterized the microbial community proteomes of POC samples collected from the twilight zone of three contrasting sites in the Northwest Pacific Ocean using a metaproteomic approach. The particle-attached bacteria from Alteromonadales, Rhodobacterales, and Enterobacterales were the primary POC remineralizers. Hydrolytic enzymes, including proteases and hydrolases, that degrade proteinaceous components and polysaccharides, the main constituents of POC, were abundant and taxonomically associated with these bacterial groups. Furthermore, identification of diverse species-specific transporters and metabolic enzymes implied niche specialization for nutrient acquisition among these bacterial groups. Temperature was the main environmental factor driving the active bacterial groups and metabolic processes, and Enterobacterales replaced Alteromonadales as the predominant group under low temperature. This study provides insight into the key bacteria and metabolic processes involved in POC remineralization, and niche complementarity and species substitution among bacterial groups are critical for efficient POC remineralization in the twilight zone. IMPORTANCE The ocean's twilight zone is a critical zone where more than 70% of the sinking particulate organic carbon (POC) is remineralized. Therefore, the twilight zone determines the size of biological carbon storage in the ocean and regulates the global climate. Prokaryotes are major players that govern remineralization of POC in this region. However, knowledge of microbial community structure and metabolic activity is still lacking. This study unveiled microbial communities and metabolic activities of POC samples collected from the twilight zone of three contrasting environments in the Northwest Pacific Ocean using a metaproteomic approach. Alteromonadales, Rhodobacterales, and Enterobacterales were the major remineralizers of POC. They excreted diverse species-specific hydrolytic enzymes to split POC into solubilized POC or dissolved organic carbon. Temperature played a crucial role in regulating the community composition and metabolism. Furthermore, niche complementarity or species substitution among bacterial groups guaranteed the efficient remineralization of POC in the twilight zone.

Microstructure and composition of marine aggregates as co-determinants for vertical particulate organic carbon transfer in the global ocean

Abstract. Marine aggregates are the vector for biogenically bound carbon and nutrients from the euphotic zone to the interior of the oceans. To improve the representation of this biological carbon pump in the global biogeochemical HAMburg Ocean Carbon Cycle (HAMOCC) model, we implemented a novel Microstructure, Multiscale, Mechanistic, Marine Aggregates in the Global Ocean (M4AGO) sinking scheme. M4AGO explicitly represents the size, microstructure, heterogeneous composition, density and porosity of aggregates and ties ballasting mineral and particulate organic carbon (POC) fluxes together. Additionally, we incorporated temperature-dependent remineralization of POC. We compare M4AGO with the standard HAMOCC version, where POC fluxes follow a Martin curve approach with (i) linearly increasing sinking velocity with depth and (ii) temperature-independent remineralization. Minerals descend separately with a constant speed. In contrast to the standard HAMOCC, M4AGO reproduces the latitudinal pattern of POC transfer efficiency, as recently constrained by Weber et al. (2016). High latitudes show transfer efficiencies of ≈0.25±0.04, and the subtropical gyres show lower values of about 0.10±0.03. In addition to temperature as a driving factor for remineralization, diatom frustule size co-determines POC fluxes in silicifier-dominated ocean regions, while calcium carbonate enhances the aggregate excess density and thus sinking velocity in subtropical gyres. Prescribing rising carbon dioxide (CO2) concentrations in stand-alone runs (without climate feedback), M4AGO alters the regional ocean atmosphere CO2 fluxes compared to the standard model. M4AGO exhibits higher CO2 uptake in the Southern Ocean compared to the standard run, while in subtropical gyres, less CO2 is taken up. Overall, the global oceanic CO2 uptake remains the same. With the explicit representation of measurable aggregate properties, M4AGO can serve as a test bed for evaluating the impact of aggregate-associated processes on global biogeochemical cycles and, in particular, on the biological carbon pump.

A new look at the multi-G model for organic carbon degradation in surface marine sediments for coupled benthic–pelagic simulations of the global ocean

Abstract. The kinetics of particulate organic carbon (POC) mineralization in marine surface sediments is not well constrained. This creates considerable uncertainties when benthic processes are considered in global biogeochemical or Earth system circulation models to simulate climate–ocean interactions and biogeochemical tracer distributions in the ocean. In an attempt to improve our understanding of the rate and depth distribution of organic carbon mineralization in bioturbated (0–20 cm) sediments at the global scale, we parameterized a 1-D diagenetic model that simulates the mineralization of three discrete POC pools (a multi-G model). The rate constants of the three reactive classes (highly reactive, reactive, refractory) are fixed and determined to be 70, 0.5 and ∼ 0.001 yr−1, respectively, based on the Martin curve model for pelagic POC degradation. In contrast to previous approaches, however, the reactivity of the organic material degraded in the seafloor is continuous with, and set by, the apparent reactivity of material sinking through the water column. Despite the simplifications of describing POC remineralization using G-type approaches, the model is able to simulate a global database (185 stations) of benthic oxygen and nitrate fluxes across the sediment–water interface in addition to porewater oxygen and nitrate distributions and organic carbon burial efficiencies. It is further consistent with degradation experiments using fresh phytoplankton reported in a previous study. We propose that an important yet mostly overlooked consideration in upscaling approaches is the proportion of the reactive POC classes reaching the seafloor in addition to their reactivity. The approach presented is applicable to both steady-state and non-steady state scenarios, and links POC degradation kinetics in sedimentary environments to water depth and the POC rain rate to the seafloor.

Particulate barium tracing of significant mesopelagic carbon remineralisation in the North Atlantic

Abstract. The remineralisation of sinking particles by prokaryotic heterotrophic activity is important for controlling oceanic carbon sequestration. Here, we report mesopelagic particulate organic carbon (POC) remineralisation fluxes in the North Atlantic along the GEOTRACES-GA01 section (GEOVIDE cruise; May–June 2014) using the particulate biogenic barium (excess barium; Baxs) proxy. Important mesopelagic (100–1000 m) Baxs differences were observed along the transect depending on the intensity of past blooms, the phytoplankton community structure, and the physical forcing, including downwelling. The subpolar province was characterized by the highest mesopelagic Baxs content (up to 727 pmol L−1), which was attributed to an intense bloom averaging 6 mg chl a m−3 between January and June 2014 and by an intense 1500 m deep convection in the central Labrador Sea during the winter preceding the sampling. This downwelling could have promoted a deepening of the prokaryotic heterotrophic activity, increasing the Baxs content. In comparison, the temperate province, characterized by the lowest Baxs content (391 pmol L−1), was sampled during the bloom period and phytoplankton appear to be dominated by small and calcifying species, such as coccolithophorids. The Baxs content, related to oxygen consumption, was converted into a remineralisation flux using an updated relationship, proposed for the first time in the North Atlantic. The estimated fluxes were of the same order of magnitude as other fluxes obtained using independent methods (moored sediment traps, incubations) in the North Atlantic. Interestingly, in the subpolar and subtropical provinces, mesopelagic POC remineralisation fluxes (up to 13 and 4.6 mmol C m−2 d−1, respectively) were equalling and occasionally even exceeding upper-ocean POC export fluxes, deduced using the 234Th method. These results highlight the important impact of the mesopelagic remineralisation on the biological carbon pump of the studied area with a near-zero, deep (> 1000 m) carbon sequestration efficiency in spring 2014.

Remineralization of particulate organic carbon in an ocean oxygen minimum zone

Biological oceanic processes, principally the surface production, sinking and interior remineralization of organic particles, keep atmospheric CO2 lower than if the ocean was abiotic. The remineralization length scale (RLS, the vertical distance over which organic particle flux declines by 63%, affected by particle respiration, fragmentation and sinking rates) controls the size of this effect and is anomalously high in oxygen minimum zones (OMZ). Here we show in the Eastern Tropical North Pacific OMZ 70% of POC remineralization is due to microbial respiration, indicating that the high RLS is the result of lower particle fragmentation by zooplankton, likely due to the almost complete absence of zooplankton particle interactions in OMZ waters. Hence, the sensitivity of zooplankton to ocean oxygen concentrations can have direct implications for atmospheric carbon sequestration. Future expansion of OMZs is likely to increase biological ocean carbon storage and act as a negative feedback on climate change.

Development of a global ocean mercury model with a methylation cycle: Outstanding issues

We present a newly developed global ocean mercury (Hg) transport and biogeochemistry model and use preanthropogenic equilibrium simulations to highlight physical and chemical processes which reveal significant knowledge gaps that need to be addressed. As with previous 3‐D ocean Hg model work we use a bulk chemistry scheme based on particulate organic carbon remineralization. We also include an explicit methylation cycle based on available reaction rates. The methylation to demethylation rate ratio based on various field studies is found to be inconsistent with the concentration ratios measured in the Southern Ocean around Antarctica and in the Arctic. There is also model‐measurement disagreement in the old waters of the tropical and North Pacific Ocean. The model produces an intermediate water maximum in total Hg in this region reflecting the higher age of water which is absent in observations. The model also underestimates total Hg concentrations in the deepest waters in this region. These disagreements in depth profile shape point to an inadequate representation of scavenging and sedimentation and possibly seabed emission or remobilization of Hg. In addition, the total Hg distribution differences compared to previous model work reflect sensitivity to ocean model transport characteristics and in particular the tracer diffusion. The residence time of Hg in the global ocean and the surface evasion flux of elemental Hg is sensitive to such model aspects. We find a global ocean Hg turnover time against sediment burial to be about 1100 years which is within the range of previous studies.

Early spring mesopelagic carbon remineralization and transfer efficiency in the naturally iron-fertilized Kerguelen area

Abstract. We report on the zonal variability of mesopelagic particulate organic carbon remineralization and deep carbon transfer potential during the Kerguelen Ocean and Plateau compared Study 2 expedition (KEOPS 2; October–November 2011) in an area of the polar front supporting recurrent massive blooms from natural Fe fertilization. Mesopelagic carbon remineralization (MR) was assessed using the excess, non-lithogenic particulate barium (Baxs) inventories in mesopelagic waters and compared with bacterial production (BP), surface primary production (PP) and export production (EP). Results for this early season study are compared with the results obtained during a previous study (2005; KEOPS 1) for the same area at a later stage of the phytoplankton bloom. Our results reveal the patchiness of the seasonal advancement and of the establishment of remineralization processes between the plateau (A3) and polar front sites during KEOPS 2. For the Kerguelen plateau (A3 site) we observe a similar functioning of the mesopelagic ecosystem during both seasons (spring and summer), with low and rather stable remineralization fluxes in the mesopelagic column (150–400 m). The shallow water column (~500 m), the lateral advection, the zooplankton grazing pressure and the pulsed nature of the particulate organic carbon (POC) transfer at A3 seem to drive the extent of MR processes on the plateau. For deeper stations (>2000 m) located on the margin, inside a polar front meander, as well as in the vicinity of the polar front, east of Kerguelen, remineralization in the upper 400 m in general represents a larger part of surface carbon export. However, when considering the upper 800 m, in some cases, the entire flux of exported carbon is remineralized. In the polar front meander, where successive stations form a time series, two successive events of particle transfer were evidenced by remineralization rates: a first mesopelagic and deep transfer from a past bloom before the cruise, and a second transfer expanding at mesopelagic layers during the cruise. Regarding the deep carbon transfer efficiency, it appeared that above the plateau (A3 site) the mesopelagic remineralization was not a major barrier to the transfer of organic matter to the seafloor (close to 500 m). There, the efficiency of carbon transfer to the bottom waters (>400 m) as assessed by PP, EP and MR fluxes comparisons reached up to 87% of the carbon exported from the upper 150 m. In contrast, at the deeper locations, mesopelagic remineralization clearly limited the transfer of carbon to depths of >400 m. For sites at the margin of the plateau (station E-4W) and the polar front (station F-L), mesopelagic remineralization even exceeded upper 150 m export, resulting in a zero transfer efficiency to depths >800 m. In the polar front meander (time series), the capacity of the meander to transfer carbon to depth >800 m was highly variable (0 to 73%). The highest carbon transfer efficiencies in the meander are furthermore coupled to intense and complete deep (>800 m) remineralization, resulting again in a near-zero, deep (>2000 m) carbon sequestration efficiency there.

Dynamics of particulate organic carbon flux in a global ocean model

Abstract. The sinking of particulate organic carbon (POC) is a key component of the ocean carbon cycle and plays an important role in the global climate system. However, the processes controlling the fraction of primary production that is exported from the euphotic zone (export ratio) and how much of it survives respiration in the mesopelagic to be sequestered in the deep ocean (transfer efficiency) are not well understood. In this study, we use a three-dimensional, coupled physical–biogeochemical model (CCSM–BEC; Community Climate System Model–ocean Biogeochemical Elemental Cycle) to investigate the processes controlling the export of particulate organic matter from the euphotic zone and its flux to depth. We also compare model results with sediment trap data and other parameterizations of POC flux to depth to evaluate model skill and gain further insight into the causes of error and uncertainty in POC flux estimates. In the model, export ratios are mainly a function of diatom relative abundance and temperature while absolute fluxes and transfer efficiency are driven by mineral ballast composition of sinking material. The temperature dependence of the POC remineralization length scale is modulated by denitrification under low O2 concentrations and lithogenic (dust) fluxes. Lithogenic material is an important control of transfer efficiency in the model, but its effect is restricted to regions of strong atmospheric dust deposition. In the remaining regions, CaCO3 content of exported material is the main factor affecting transfer efficiency. The fact that mineral ballast composition is inextricably linked to plankton community structure results in correlations between export ratios and ballast minerals fluxes (opal and CaCO3), and transfer efficiency and diatom relative abundance that do not necessarily reflect ballast or direct ecosystem effects, respectively. This suggests that it might be difficult to differentiate between ecosystem and ballast effects in observations. The model's skill in reproducing sediment trap observations is equal to or better than that of other parameterizations. However, the sparseness and relatively large uncertainties of sediment trap data makes it difficult to accurately evaluate the skill of the model and other parameterizations. More POC flux observations, over a wider range of ecological regimes, are necessary to thoroughly evaluate and test model results and better understand the processes controlling POC flux to depth in the ocean.

Late summer particulate organic carbon export and twilight zone remineralisation in the Atlantic sector of the Southern Ocean

Abstract. As part of the GEOTRACES Bonus-GoodHope (BGH) expedition (January–March 2008) in the Atlantic sector of the Southern Ocean, particulate organic carbon (POC) export was examined from the surface to the mesopelagic twilight zone using water column distributions of total 234Th and biogenic particulate Ba (Baxs). Surface POC export production was estimated from steady state and non steady state modelling of 234Th fluxes, which were converted into POC fluxes, using the POC/234Th ratio of large, potentially sinking particles (> 53 μm) collected via in situ pumps. Deficits in 234Th activities were observed at all stations from the surface to the bottom of the mixed layer, yielding 234Th export fluxes from the upper 100 m of 496 ± 214 dpm m−2 d−1 to 1195 ± 158 dpm m−2 d−1 for the steady state model and of 149 ±517 dpm m−2 d−1 to 1217 ± 231 dpm m−2 d−1 for the non steady state model. Using the POC/234Thp ratio of sinking particles (ratios varied from 1.7 ± 0.2 μmol dpm−1 to 4.8 ± 1.9 μmol dpm−1) POC export production at 100 m was calculated to range between 0.9 ± 0.4 and 5.1 ± 2.1 mmol C m−2 d−1,assuming steady state and between 0.3 ± 0.9 m−2 d−1 and 4.9 ± 3.3 mmol C m−2 d−1, assuming non steady state. From the comparison of both approaches, it appears that during late summer export decreased by 56 to 16% for the area between the sub-Antarctic zone and the southern Antarctic Circumpolar Current Front (SACCF), whereas it remained rather constant over time in the HNLC area south of the SACCF. POC export represented only 6 to 54% of new production, indicating that export efficiency was, in general, low, except in the vicinity of the SACCF, where export represented 56% of new production. Attenuation of the POC sinking flux in the upper mesopelagic waters (100–600 m depth interval) was evidenced both, from excess 234Th activities and from particulate biogenic Ba (Baxs) accumulation. Excess 234Th activities, reflected by 234Th/238U ratios as large as 1.21 ± 0.05, are attributed to remineralisation/disaggregation of 234Th-bearing particles. The accumulation of excess 234Th in the 100–600 m depth interval ranged from 458 ± 633 dpm m−2 d−1 to 3068 ± 897 dpm m−2 d−1, assuming steady state. Using the POC/234Thp ratio of sinking particles (> 53 μm), this 234Th accumulation flux was converted into a POC remineralisation flux which ranged between 0.9 ± 1.2 mmol C m−2 d−1 and 9.2 ± 2.9 mmol C m−2 d−1. Mesopelagic particulate biogenic Ba has been reported to reflect bacterial degradation of organic matter and to be related to oxygen consumption and bacterial carbon respiration. We observed that the highest Baxs contents (reaching up to > 1000 pM), in general, occurred between 200 and 400 m. Depth-weighted average mesopelagic Baxs (meso-Baxs) values were converted into respired C fluxes, which ranged between 0.23 and 6.4 mmol C m−2 d−1, in good agreement with 234Th-based remineralisation fluxes. A major outcome from this study is the observed significant positive correlation between POC remineralisation as estimated from meso-Baxs contents and from 234Th excess (R2 = 0.73; excluding 2 outliers). Remineralisation of POC in the twilight zone was particularly efficient relative to POC export resulting in negligible bathypelagic (> 600 m) POC export fluxes in the sub-Antarctic zone, the Polar Front zone and the northern Weddell Gyre, while the subtropical zone as well as the vicinity of the SACCF had significant deep POC fluxes.

Vertically structured prokaryotic community can control the efficiency of the biological pump in the oceans

Despite recent advances in molecular and metagenomic approaches, it is still unclear how spatiotemporal variations in microbial communities influence the biological pump, exporting organic carbon from the surface to the deep oceans. We address this important problem by constructing a simple model of a prokaryotic metacommunity in which two generalist ecotypes compete for two resources. The first and the second ecotypes have, respectively, a higher preference for particulate organic carbon (POC) and dissolved organic carbon. Sinking of POC would lead to a higher abundance of the first ecotype in the deep layer compared to the surface layer, but vertical mixing in turn generates a net upward flux of this ecotype to the surface layer. This upward movement accelerates the shifts in the community composition during the phytoplankton bloom, contributing to a higher efficiency in POC remineralization at the surface layer and reducing the carbon flux to the deep layer.

Immigration of prokaryotes to local environments enhances remineralization efficiency of sinking particles: a metacommunity model

MEPS Marine Ecology Progress Series Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsTheme Sections MEPS 366:1-14 (2008) - DOI: https://doi.org/10.3354/meps07597 FEATURE ARTICLE Immigration of prokaryotes to local environments enhances remineralization efficiency of sinking particles: a metacommunity model Takeshi Miki1,4,*, Taichi Yokokawa2, Toshi Nagata1,5, Norio Yamamura3 1Center for Ecological Research, Kyoto University, Hirano 2-509-3, Otsu, Shiga 5202113, Japan 2Department of Biological Oceanography, Royal Netherlands Institute for Sea Research PO Box 59, 1790 AB Den Burg, The Netherlands 3Research Institute for Humanity and Nature, 457-4 Motoyama, Kamigamo, Kita-ku, Kyoto 603-8047, Japan 4Present address: Institute of Oceanography, National Taiwan University, No. 1, Sec. 4, Roosevelt Rd., Taipei 10617, Taiwan 5Present address: Marine Biogeochemistry Group, Department of Chemical Oceanography, Ocean Research Institute, The University of Tokyo, 1-15-1 Minami-dai, Nakano, Tokyo 164-8639, Japan *Email: tks_miki@yahoo.co.jp ABSTRACT: Processing of organic matter by heterotrophic prokaryotes regulates carbon sequestration in the ocean, and thus influences the global climate. Recent studies have begun to elucidate the remarkable diversity of oceanic prokaryotes with estimates of >1000 species or phylotypes in a single local habitat and up to 2 million in the global ocean. However, how this prokaryotic diversity and spatial heterogeneity in their compositions contribute to regional variations in major biogeochemical fluxes driven by heterotrophic prokaryotes is still unclear. A new theoretical model integrating the metacommunity concept with oceanic biogeochemistry demonstrates that increased production of particulate organic carbon (POC) leads to increased efficiency of remineralization of POC in the surface ocean, affecting the carbon export to deep waters. This is attributed to flexible shifts in the local prokaryotic community composition in response to changes in primary production, which is facilitated by the high degree of diversity in the metacommunity and moderate immigration rates of prokaryotes into the local community. By linking the spatial heterogeneity of microbial communities to their transient dynamics, a metacommunity concept will improve our understanding of the regional variability of biogeochemical processes in the oceans. KEY WORDS: Theoretical model · Biological pump · Carbon cycle · Biodiversity · Bacteria · Metacommunity Full text in pdf format Information about this Feature Article NextCite this article as: Miki T, Yokokawa T, Nagata T, Yamamura N (2008) Immigration of prokaryotes to local environments enhances remineralization efficiency of sinking particles: a metacommunity model. Mar Ecol Prog Ser 366:1-14. https://doi.org/10.3354/meps07597 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in MEPS Vol. 366. Online publication date: August 29, 2008 Print ISSN: 0171-8630; Online ISSN: 1616-1599 Copyright © 2008 Inter-Research.

Optimization and sensitivity of a global biogeochemistry ocean model using combined in situ DIC, alkalinity, and phosphate data

We present a systematic parameter optimization and sensitivity analysis of a three‐dimensional global ocean biogeochemistry model. We use the global data sets of dissolved inorganic carbon (DIC), alkalinity, and phosphate to constrain the parameters of a biogeochemistry model which include the stoichiometric ratios rC:P and rN:P, the fraction σ of organic material production allocated to dissolved organic matter (DOM), the lifetime 1/κ of DOM, the exponent α in the power law for the depth profile of the remineralization of particulate organic carbon (POC), the rain ratio R of CaCO3, and the e‐folding length scale d for the depth profile of CaCO3 dissolution. The data‐constrained parameter values are rC:P = 137 ± 11, σ = 0.74 ± 0.04, 1/κ = 1.7 ± 0.5 years, α = −0.97 ± 0.07, R = 0.081 ± 0.008, and d = 2100 ± 300 m. The postoptimization carbon export from POC is 15 ± 1 Gt/a and from CaCO3 is 1.2 ± 0.1 Gt/a of which 67 ± 4% dissolves above 2000 m. The ± ranges indicate an average 1% decrease in the fraction of the spatial variance in the observed tracer data captured by the model. The sensitivity of the model to its parameters is presented in terms of sensitivity patterns defined as the derivative of the model's equilibrium tracer distribution with respect to the parameters (S patterns). The soft‐tissue, carbonate, and gas exchange pump mechanisms responsible for the sensitivities are presented. The pump decomposition of the S patterns illustrates quantitatively how changes in organic and inorganic carbon fluxes are coupled with the large‐scale ocean circulation and how the gas exchange pump couples to the global ventilation patterns through changes in surface chemistry.

Particulate organic carbon fluxes to the ocean interior and factors controlling the biological pump: A synthesis of global sediment trap programs since 1983

Particulate organic carbon (POC) is vertically transported to the oceanic interior by aggregates and their ballasts, mainly CaCO 3 and biogenic opal, with a smaller role for lithogenic aerosols through the mesopelagic zone. Diel migrating zooplankton communities effect vertical transport and remineralization of POC in the upper layers of the ocean. Below 1.5 km, the presence of zooplankton is reduced and thus the aggregates travel mainly by gravitational transport. We normalized the fluxes of POC, CaCO 3, and biogenic opal from data published on samples collected at 134 globally distributed, bottom-tethered, time-series sediment trap (TS-trap) stations to annual mole fluxes at the mesopelagic/bathypelagic boundary (m/b) at 2 km and defined them as F m/bC org, F m/bC inorg, and F m/bSi bio. Using this global data set, we investigated (1) the geographic contrasts of POC export at m/b and (2) the supply rate of ∑CO 2 to the world mesopelagic water column. F m/bC org varies from 25 (Pacific Warm Pool) to 605 (divergent Arabian Sea) mmolC m −2 yr −1; F m/bC inorg varies from >8 (high latitude Polar Oceans) or 15 (Pacific Warm Pool) to 459 (divergent Arabian Sea) mmolC m −2 yr −1; and F m/bSi bio, the most spatially/temporally variable flux, ranges from 6 (North Atlantic Drift) to 1118 (Pacific Subarctic Gyre) mmolSi m −2 yr −1. The oceanic region exhibiting the highest POC flux over a significantly large region is the area of the North Pacific Boreal Gyres where the average F m/bC org = 213, F m/bC inorg = 126, and F m/bSi bio = 578 mmol m −2 yr −1. F m/bC org and F m/bC inorg are particularly high in large upwelling margins, including the divergent Arabian Sea and off Cape Verde. One of the data sets showing the lowest flux over a significant region/basin is F m/bC org = 39, F m/bC inorg = 69, and F m/bSi bio = 22 mmol m −2 yr −1 in the North Pacific subtropical/tropical gyres; Pan-Atlantic average fluxes are similar except F m/bSi bio fluxes are even lower. Where C org/C inorg and Si bio/C inorg are <1 defines the “Carbonate Ocean”, and where these ratios are ⩾1 defines the “Silica Ocean”. The Carbonate Ocean occupies about 80% of the present world pelagic ocean between the two major oceanographic fronts, the North Pacific Polar Front and the Antarctic Polar Front, and the Silica Ocean is found on the polar sides of these fronts. The total global annual fluxes of F m/bC org, F m/bC inorg, and F m/bSi bio at m/b calculated by parameterizations of the export flux data from 134 stations are surprisingly similar; 36.2, 33.8, and 34.6 teramol yr −1 (120, 112, and 114 mmol m −2 yr −1), respectively, resulting in a near uniform binary ratio between the above three elements of about one. The global ternary % ratios estimated from 152 TS-trap samples of the three elements are 35:32:33. From our global F m/bC org and a published model estimate of the global export production, we estimate the regeneration rate of CO 2 through the mesopelagic zone by the biological pump is 441 teramolC yr −1. Based on our global F m/bC inorg and recently estimated global primary production of PIC, 36–86 teramolC yr −1 of PIC is assumed to be dissolved within the upper 2 km of the water column.