Relative Abundance Of Methanogens Research Articles

Temperature sensitivity of methanogenesis and anaerobic methane oxidation in thermokarst lakes modulated by surrounding vegetation on the Qinghai-Tibet Plateau

Understanding the balance between methane (CH4) production (methanogenesis) and its oxidation is important for predicting carbon emissions from thermokarst lakes under global warming. However, the response of thermokarst lake methanogenesis and the anaerobic oxidation of methane (AOM) to warming, especially from Qinghai-Tibetan Plateau (QTP), is still not quantified. In this study, sediments were collected from 11 thermokarst lakes on the QTP. These lakes are surrounded with different vegetation types, including alpine desert (AD), alpine steppe (AS), alpine meadow (AM) and alpine swamp meadow (ASM). The results showed that methanogenesis and AOM rates exponentially increased with temperature, while the temperature sensitivity (Q10, average Q10 values of methanogenesis and AOM were 0.69–30 and 0.54–16.9 respectively) of methanogenesis were larger than AOM, but not significant, showing a similar temperature dependence of methanogenesis and AOM in thermokarst lake sediments. Thermokarst lake sediments in the ASM had higher methanogenesis and anaerobic oxidation potential, matching its higher NDVI and relative abundances of methanogens and SBM (syntrophic bacteria with methanogens). Although the thermokarst lake sediments AOM depleted 15 %–27.8 % of the total CH4 production, the AOM rate was lower than methanogenesis in thermokarst lake sediments, it did not offset increased CH4 production under anaerobic conditions. The increase in CH4 production in thermokarst lake sediments will likely lead to higher emissions within a warming world. These findings indicate that methanogenesis and AOM in thermokarst lake sediments are sensitive to climate change. Models should consider the Q10 values of methanogenesis and AOM and vegetation types when predicting carbon cycle in thermokarst lakes under global warming.

Greenhouse Gas Emissions and Bacterial Community Structure as Influenced by Biodegradable Film Mulching in Eastern China

Machine transplanting technology of biodegradable films has solved the problems of the higher cost of artificial film and the serious environmental pollution of polyethylene film residue. Previous studies have shown the positive impact of mulching on mitigating global warming potential. However, the mechanisms underlying the association between greenhouse gas emissions and the bacterial community structure in paddy field soil with biodegradable film mulching (BM) still remain limited. In this study, greenhouse gas emissions and the associated bacterial community in non-mulching, biodegradable mulching in a paddy field in Eastern China were analyzed over the 2019 and 2020 rice growing seasons. Rice mulching cultivation significantly inhibited CH4 emissions from a rice paddy, mainly due to the significant reduction in methane emission peaks. Film mulching significantly increased the diversity of the bacterial community as revealed by 16S rRNA gene sequencing. The relative abundance of methanogens was decreased, while the relative abundance of methanotrophs was increased in the paddy soil due to the BM treatment, with the change pattern basically consistent with CH4 emissions. The N2O emissions during the growth period showed a pronounced downward trend. However, the total abundance of bacteria involved in nitrification and denitrification was higher under BM. Mulching cultivation improved the soil nutrient availability and significantly increased the yield by 5.0%. BM inhibited the greenhouse gas emission intensity (GHGI) of the paddy field by 46.9%. Film mechanical transplanting could promote yield increases and significantly mediate the warming potential (GWP) of greenhouse gases in the paddy fields of the Middle-Lower Yangtze Area. The rational use of film mechanical transplanting would play a role in carbon neutrality in paddy fields. This study provided a theoretical basis for paddy field emission reduction and sustainable agricultural development.

Effects of inoculating feruloyl esterase-producing Lactiplantibacillus plantarum A1 on ensiling characteristics, in vitro ruminal fermentation and microbiota of alfalfa silage

BackgroundFerulic acid esterase (FAE)-secreting Lactiplantibacillus plantarum A1 (Lp A1) is a promising silage inoculant due to the FAE’s ability to alter the plant cell wall structure during ensiling, an action that is expected to improve forage digestibility. However, little is known regarding the impacts of Lp A1 on rumen microbiota. Our research assessed the influences of Lp A1 in comparison to a widely adopted commercial inoculant Lp MTD/1 on alfalfa’s ensilage, in vitro rumen incubation and microbiota.ResultsSamples of fresh and ensiled alfalfa treated with (either Lp A1 or Lp MTD/1) or without additives (as control; CON) and ensiled for 30, 60 and 90 d were used for fermentation quality, in vitro digestibility and batch culture study. Inoculants treated silage had lower (P < 0.001) pH, acetic acid concentration and dry matter (DM) loss, but higher (P = 0.001) lactic acid concentration than the CON during ensiling. Compared to the CON and Lp MTD/1, silage treated with Lp A1 had lower (P < 0.001) aNDF, ADF, ADL, hemicellulose, and cellulose contents and higher (P < 0.001) free ferulic acid concentration. Compared silage treated with Lp MTD/1, silage treated with Lp A1 had significantly (P < 0.01) improved ruminal gas production and digestibility, which were equivalent to those of fresh alfalfa. Real-time PCR analysis indicated that Lp A1 inoculation improved the relative abundances of rumen’s total bacteria, fungi, Ruminococcus albus and Ruminococcus flavefaciens, while the relative abundance of methanogens was reduced by Lp MTD/1 compared with CON. Principal component analysis of rumen bacterial 16S rRNA gene amplicons showed a clear distinction between CON and inoculated treatments without noticeable distinction between Lp A1 and Lp MTD/1 treatments. Comparison analysis revealed differences in the relative abundance of some bacteria in different taxa between Lp A1 and Lp MTD/1 treatments. Silage treated with Lp A1 exhibited improved rumen fermentation characteristics due to the inoculant effects on the rumen microbial populations and bacterial community.ConclusionsOur findings suggest that silage inoculation of the FAE-producing Lp A1 could be effective in improving silage quality and digestibility, and modulating the rumen fermentation to improve feed utilization.

Contrasting Fecal Methanogenic and Bacterial Profiles of Organic Dairy Cows Located in Northwest Washington Receiving Either a Mixed Diet of Pasture and TMR or Solely TMR.

Simple SummaryMethane is a by-product of the microbial fermentation process from a group of archaea known as methanogens. Ruminants harbor methanogens as a component of their normal gastrointestinal microbiota. In this study, we assessed the fecal microbiome of organic dairy cows across different time points receiving a mixed diet of pasture and TMR or TMR only. Our aim was to compare the archaea and bacterial fecal microbial structure, diversity and their interactions across diets. Cluster analysis based on the cows’ fecal microbial community identified four clusters. We found little difference in the relative abundance of methanogens across clusters. However, there was evidence of differences in diversity between pasture associated communities and those associated with TMR only. The cluster associated with cows receiving high-quality pasture and TMR, had higher diversity and a less robust co-occurrence network than those in TMR only or lower-quality pasture communities. The overall good pasture and TMR quality, combined with the organic allowance for feeding high levels of TMR, might have contributed to the lack of differences in the fecal archaeal community. The development of novel strategies that are independent of pasture management could have a greater impact in helping to reduce enteric CH4 emissions on organic dairies.Currently, little is known regarding fecal microbial populations and their associations with methanogenic archaea in pasture-based dairy cattle. In this study, we assessed the fecal microbiome of organic dairy cows across different time points receiving a mixed diet of pasture and total mixed ration (TMR) or TMR only. We hypothesized that the fecal methanogenic community, as well as co-occurrence patterns with bacteria, change across diets. To test these hypotheses, we analyzed TMR and pasture samples, as well as the V3-V4 region of 16S rRNA of fecal samples collected over the course of a one-year study period from 209 cows located on an organic dairy in Northwest Washington. The inherent variability in pasture quality, quantity, availability, and animal preference can lead to diverse dietary intakes. Therefore, we conducted a k-means clustering analysis to identify samples from cows that were associated with either a pasture-based diet or a solely TMR diet. A total of 4 clusters were identified. Clusters 1 and 3 were mainly associated with samples primarily collected from cows with access to pasture of varying quality and TMR, cluster 2 was formed by samples from cows receiving only TMR, and cluster 4 was a mix of samples from cows receiving high-quality pasture and TMR or TMR only. Interestingly, we found little difference in the relative abundance of methanogens between the community clusters. There was evidence of differences in diversity between pasture associated bacterial communities and those associated with TMR. Cluster 4 had higher diversity and a less robust co-occurrence network based on Spearman correlations than communities representing TMR only or lower-quality pasture samples. These findings indicate that varied bacterial communities are correlated with the metabolic characteristics of different diets. The overall good pasture and TMR quality in this study, combined with the organic allowance for feeding high levels of TMR even during the grazing season, might have contributed to the lack of differences in the fecal archaeal community from samples associated with a mixed pasture and TMR diet, and a TMR only diet. Mitigation strategies to decrease methane emissions such as increasing concentrate to forage ratio, decreasing pasture maturity and adopting grazing systems targeting high quality pasture have been shown to be efficient for pasture-based systems. However, the allowance for organic dairy producers to provide up to an average of 70% of a ruminant’s dry matter demand from dry matter fed (e.g., TMR), suggests that reducing enteric methane emissions may require the development of novel dietary strategies independent of pasture management.

Emission factors for Vietnamese beef cattle manure sun-drying and the effects of drying on manure microbial community.

Livestock manure and its management are significant sources of greenhouse gas (GHG). In most Southeast Asian countries, the current GHG emissions are estimated by the Intergovernmental Panel on Climate Change (IPCC) Tier 1 approach using default emission factors. Sun-drying is the dominant manure treatment in Vietnam, and in this study, we measured GHG emissions during manure drying using a chamber-based approach. Results show the emission factors for CH4 and N2O were 0.295 ± 0.078 g kg-1 volatile solids (VS) and 0.132 ± 0.136 g N2O-N kg-1 Ninitial, respectively. We monitored the total bacterial/archaeal community using 16S rRNA gene amplicon sequencing and measured the abundance of functional genes required for methanogenesis (mcrA), nitrification (amoA) and denitrification (nirK, nirS and nosZ) processes. Methane emission occurred only at the beginning of the drying process (days 1 to 3). The results of amplicon sequencing indicated that the relative abundance of methanogens also decreased during this period. Although some nitrification activity was detected, there was no significant N2O emission. These findings well describe the manure management system in south Vietnam and the GHG emission from this manure category, paving the way for higher Tier estimations using country-specific values.

Deep sequencing reveals changes in prokaryotic taxonomy and functional diversity of pit muds in different distilleries of China

PurposeThe microbial community in the pit mud correlated closely with the quality of the final product of Chinese strong-flavored Baijiu (CSFB). However, environmental conditions and brewing processes can vary by region and distilleries. This may lead to differences in microbial composition and function in pit mud. Therefore, revealing the features of the pit mud microbial community structure and functions of different distilleries will provide key information for understanding the diversity and difference of microbes in the brewing of CSFB, which will be beneficial for the improvement of the quality of pit mud and CSFB in the future.Methods and resultsIllumina MiSeq sequencing of 16S rRNA gene amplicons was used to analyze the similarities and differences in microbial community structure and function in pit muds of different distilleries located in Shihezi (Xinjiang), Xiangyang (Hubei), and Yibin (Sichuan). At the genus level, Clostridium, Lactobacillus, Aminobacterium, Petrimonas, Syntrophomonas, Methanoculleus, Syntrophaceticus, Sedimentibacter, Caloramator, Ruminococcus, Bacillus, Methanosarcina, and Garciella were the dominated genera of pit muds. There were great differences in the composition of microorganisms in pit muds used by different distilleries. The significantly enriched prokaryotic microbiotas of pit muds collected in the distilleries of Xiangyang were mainly affiliated with Bacillus, Lactobacillus, and Croceifilum, and the relative abundance of methanogens, such as Methanomicrobia and Methanobacteria, were only significantly enriched in the pit mud collected from the distilleries of Yibin (P < 0.05). Functional analysis indicated that the difference of microbial composition in pit mud will further lead to significant differences in various metabolic functions.ConclusionThe compositions and functions of dominant microorganisms in pit mud used for the production of CSFB by different enterprises across regions in China were greatly different, and there was a close relationship between the compositions and functions of microorganisms in pit mud. Therefore, it may be an effective method to improve CSFB fermentation processes by directionally regulating the microbial community functions of pit mud using specific strains.

Encapsulated nitrate replacing soybean meal in diets with and without monensin on in vitro ruminal fermentation

This study assessed the association between encapsulated nitrate product (ENP) and monensin (MON) to mitigate enteric methane (CH4) in vitro and possible effects on ruminal degradability, enteric fermentation characteristics, and microbial populations. Six treatments were used in randomized complete design in a 2×3 factorial arrangement with two levels of MON (0 and 2.08 mg/mL of buffered rumen fluid) and three levels of ENP (0, 1.5 and 3.0%). The substrate consisted of 50% Tifton-85 hay and 50% concentrate mixture (ground corn and soybean meal). ENP replaced soybean meal to achieve isonitrogenous diets (15% CP). No ENP×MON interaction was observed for any measured variable (P > 0.05) except for the relative abundance of F. succinogenes (P = 0.02) that linearly increased in diets with MON when ENP was added. The ENP addition decreased CH4 production (P < 0.01) without affecting (P > 0.05) truly degraded organic matter nor the relative abundance of methanogens. Hydrogen production was reduced with MON (P = 0.04) and linearly decreased with ENP inclusion (P = 0.02). We concluded that use of nitrate is a viable strategy for CH4 reduction, however, no additive effect of ENP and MON was observed for mitigating CH4 production.

Effects of Soil Moisture and Temperature on Microbial Regulation of Methane Fluxes in a Poplar Plantation

Improved mechanistic understanding of soil methane (CH4) exchange responses to shifts in soil moisture and temperature in forest ecosystems is pivotal to reducing uncertainty in estimates of the soil-atmospheric CH4 budget under climate change. We investigated the mechanism behind the effects of soil moisture and temperature shifts on soil CH4 fluxes under laboratory conditions. Soils from the Huai River Basin in China, an area that experiences frequent hydrological shifts, were sampled from two consecutive depths (0–20 and 20–50 cm) and incubated for 2 weeks under different combinations of soil moisture and temperature. Soils from both depths showed an increase in soil moisture and temperature-dependent cumulative CH4 fluxes. CH4 production rates incubated in different moisture and temperature in surface soil ranged from 1.27 to 2.18 ng g−1 d−1, and that of subsurface soil ranged from 1.18 to 2.34 ng g−1 d−1. The Q10 range for soil CH4 efflux rates was 1.04–1.37. For surface soils, the relative abundance and diversity of methanotrophs decreased with moisture increase when incubated at 5 °C, while it increased with moisture increase when incubated at 15 and 30 °C. For subsurface soils, the relative abundance and diversity of methanotrophs in all samples decreased with moisture increase. However, there was no significant difference in the diversity of methanogens between the two soil depths, while the relative abundance of methanogens in both depths soils increased with temperature increase when incubated at 150% water-filled pore space (WFPS). Microbial community composition exhibited large variations in post incubation samples except for one treatment based on the surface soils incubated at 15 °C, which showed a decrease in the total and unique species number of methanotrophs with moisture increase. In contrast, the unique species number of methanogens in surface soils increased with moisture increase. The analysis of distance-based redundancy analysis (db-RDA) showed that soil pH, dissolved organic carbon (DOC), dissolved organic nitrogen (DON), microbial biomass carbon (MBC), NO3−-N, and NH4+-N mainly performed a significant effect on methanotrophs community composition when incubated at 60% WFPS, while they performed a significant effect on methanogens community composition when incubated at 150% WFPS. Overall, our findings emphasized the vital function of soil hydrology in triggering CH4 efflux from subtropical plantation forest soils under future climate change.

Comparative Study of Methanogenic Pathways in the Sediments of Thermokarst and Polygenetic Yamal Lakes

Comparative study of methanogen diversity and potential activity of different methanogenic pathways in the sediments of young thermokarst and mature polygenetic Yamal lakes was carried out. The hydrogenotrophic pathway of methanogenesis played an important role in methane formation in thermokarst lakes. The acetoclastic and methylotrophic pathways were also revealed there. In a polygenetic lake with a dissolved organic matter content closest to that of the thermokarst lakes, methanogenesis proceeded more intensively, and the relative abundance of methanogens, especially acetoclastic ones, was higher than in thermokarst lakes. The activity of methyl-reducing methanogens was also assumed there. Methanogens of the genera Methanothrix and Methanoregula, as well as representatives of the family Methanomassiliicoccaceae were identified in the sediments of all lakes. Methane-oxidizing bacteria (Methylobacter, Candidatus “Methylomirabilis”) and archaea (Ca. “Methanoperedens”) were also detected.

Ozone Decreased Enteric Methane Production by 20% in an in vitro Rumen Fermentation System.

Ozone (O3) is volatile, highly oxidative, and has theoretical potential to reduce ruminant enteric methanogenesis by interactions between archaea and bacteria, and substrate and oxygen. The effects of O3 on the rumen microbiota, fermentation parameters, and CH4 emissions were studied through in vitro fermentation using a RUSITEC apparatus with O3 dissolved in the salivary buffer. The substrate consisted of maize silage or grain concentrates, and the treatments were (1) control (no O3) and (2) O3 at 0.07 ± 0.022 mg/L in the buffer. A 4-day adaptation period followed by a 6-day experimental period was used for measuring gas production and composition, as well as fermentation characteristics, which included ruminal volatile fatty acids (VFA) and liquid- and solid-associated microbial communities. Ozone treatment decreased total gas production by 15.4%, most notably CH4 production by 20.4%, and CH4 gas concentration by 5.8%, without compromising dry matter digestibility (DMD) of either maize silage or grain concentrates. There were no significant effects of O3 treatment on VFA production or pH. Ozone treatment reduced the relative abundance of methanogens, particularly Methanomicrobium. This study demonstrates the potential use of O3 as a method to reduce ruminant enteric methanogenesis.

Methyl-compounds driven benthic carbon cycling in the sulfate-reducing sediments of South China Sea.

Methane is a potent greenhouse gas; methane production and consumption within seafloor sediments has generated intense interest. Anaerobic oxidation of methane (AOM) and methanogenesis (MOG) primarily occur at the depth of the sulfate-methane transition zone or underlying sediment respectively. Methanogenesis can also occur in the sulfate-reducing sediments through the utilization of non-competitive methylated compounds; however, the occurrence and importance of this process are not fully understood. Here, we combined a variety of data, including geochemical measurements, rate measurements and molecular analyses to demonstrate the presence of a cryptic methane cycle in sulfate-reducing sediments from the continental shelf of the northern South China Sea. The abundance of methanogenic substrates as well as the high MOG rates from methylated compounds indicated that methylotrophic methanogenesis was the dominant methanogenic pathway; this conclusion was further supported by the presence of the methylotrophic genus Methanococcoides. High potential rates of AOM were observed in the sediments, indicating that methane produced in situ could be oxidized simultaneously by AOM, presumably by ANME-2a/b as indicated by 16S rRNA gene analysis. A significant correlation between the relative abundance of methanogens and methanotrophs was observed over sediment depth, indicating that methylotrophic methanogenesis could potentially fuel AOM in this environment. In addition, higher potential rates of AOM than sulfate reduction rates at in situ methane conditions were observed, making alternative electron acceptors important to support AOM in sulfate-reducing sediment. AOM rates were stimulated by the addition of Fe/Mn oxides, suggesting AOM could be partially coupled to metal oxide reduction. These results suggest that methyl-compounds driven methane production drives a cryptic methane cycling and fuels AOM coupled to the reduction of sulfate and other electron acceptors.

Changes in microbial community composition, activity, and greenhouse gas production upon inundation of drained iron-rich peat soils

Globally, large-scale land drainage has severely deteriorated the functioning and services of peatlands, making restoration plans of the utmost importance. Rewetting is essential for the restoration of drained peatlands, but the level of success including greenhouse gas (GHG) mitigation largely depends on the soil microbiome interactions under the prevailing biogeochemical conditions. Here, we investigated the effects of inundation of drained iron (Fe) -rich peat topsoils on nutrient release, surface water quality, GHG production and consumption, and on the composition and activity of the microbial community. The effect of the addition of different potential electron acceptors on methane (CH4) production and consumption were studied in incubation experiments. In response to inundation, porewater concentrations of Fe, total inorganic carbon, ammonium, and phosphorus increased. CH4 emissions increased in the control (i.e. without any additions) and Fe(III) oxide amended incubations upon inundation. This could be explained by the increase in the relative abundance of methanogens even though Fe(III) was previously hypothesized to lower methanogenic activity. In contrast, nitrite, nitrate, and sulfate-rich incubations inhibited methanogenesis. The prolonged exposure to nitrogen oxides stimulated denitrification with nitrous oxide (N2O) as the main gaseous product, together with an increase in the relative abundance of denitrifying microorganisms. Our results demonstrate that insights into the changes in microbial communities in relation to soil geochemistry explain differences in responses observed in different peat soils observed upon inundation. The increase in emissions of the potent GHGs CH4 and N2O from Fe-rich peat topsoils are a major adverse effect in the early stage of inundation.

Nonlinear response of methane release to increased trophic state levels coupled with microbial processes in shallow lakes

Shallow lakes are a crucial source of methane (CH4), a potent greenhouse gas, to the atmosphere. However, large uncertainties still exist regarding the response of CH4 emissions to the increasing trophic levels of lakes as well as the underlying mechanisms. Here, we investigate the CH4 emission flux from lakes with different trophic states in the middle and lower reaches of the Yangtze River basin, China to evaluate the effect of the trophic lake index (TLI) on CH4 emissions. The mean CH4 emission fluxes from mesotrophic, eutrophic, middle-eutrophic, and hyper-eutrophic lakes were 0.1, 4.4, 12.0, and 130.4 mg m−2 h−1, respectively. Thus, the CH4 emission flux ranged widely and was positively correlated with the degree of eutrophication. The relative abundance of methanogens with respect to the total population for the mesotrophic, eutrophic, mid-eutrophic, and hyper-eutrophic states was 0.03%, 0.35%, 0.94%, and 1.17%, respectively. The biogeographic-scale pattern of lakes classified as each of these four trophic states indicated that CH4 emissions could be well-predicted by the NH4+-N concentration in the water column, as both NH4+-N and CH4 were produced during mineralisation of labile organic matter in lake sediment. In addition, the shift from clear to turbid water, which is an unhealthy evolution for lakes, was associated with a nonlinear increase in the CH4 emissions from the studied lakes. In particular, the hypereutrophic lakes functioned as CH4 emission hotspots. Our findings highlight that nutrient levels, as a potential facilitator of CH4 emissions, should be considered in future research to accurately evaluate the greenhouse gas emissions from shallow lakes.

Specific affinity and relative abundance of methanogens in acclimated anaerobic sludge treating low-strength wastewater.

Kinetic parameters affecting effluent water quality including half saturation constant (Ks), maximum specific growth rate (μmax), and specific affinity ([Formula: see text], defined as μmax/Ks) were investigated using three types of anaerobic sludge (raw anaerobic digestion sludge referred to as unacclimated sludge, unacclimated sludge after endogenous decay, and sludge acclimated to low-strength wastewater in an anaerobic membrane bioreactor (AnMBR) for 360 days). Long-term acclimation to low-strength wastewater resulted in sludge with high specific affinity (1.6 × 10-3 L/mg COD/day for acclimated sludge compared to 4.1 × 10-4 L/mg COD/day for unacclimated sludge). The μmax values for unacclimated sludge and acclimated sludge were 0.08 and 0.07 day-1, respectively. The Ks values for unacclimated sludge and acclimated sludge were 194 ± 81 mg COD/L and 45 ± 13 mg COD/L, respectively. Although the Ks of unacclimated sludge after endogenous decay increased to 772 ± 74 mg COD/L, μmax increased to 0.35 day-1 as well, resulting in no statistically significant difference of [Formula: see text] between the two types of unacclimated sludge. Overall, [Formula: see text] is a better indicator than μmax or Ks alone for determining effluent water quality, as effluent substrate concentration is approximately inversely proportional to the specific affinity. 16S rRNA sequencing data analysis indicated a high abundance (85.8% of total archaea) of Methanosaeta in the microbial community after long-term acclimation. High [Formula: see text] associated with the enrichment of Methanosaeta appears to ensure successful anaerobic treatment of low-strength wastewater.

Effects of graphite and Mn ore media on electro-active bacteria enrichment and fate of antibiotic and corresponding resistance gene in up flow microbial fuel cell constructed wetland

This study assessed the influence of substrate type on pollutants removal, antibiotic resistance gene (ARG) fate and bacterial community evolution in up-flow microbial fuel cell constructed wetlands (UCW-MFC) with graphite and Mn ore electrode substrates. Better COD removal and higher bacterial community diversity and electricity generation performance were achieved in Mn ore constructed UCW-MFC (Mn). However, the lower concentration of sulfadiazine (SDZ) and the total abundances of ARGs were obtained in the effluent in the graphite constructed UCW-MFC (s), which may be related to higher graphite adsorption and filter capacity. Notably, both reactors can remove more than 97.8% of ciprofloxacin. In addition, significant negative correlations were observed between SDZ, COD concentration, ARG abundances and bacterial a-diversity indices. The LEfse analysis revealed significantly different bacterial communities due to the substrate differences in the two reactors, and Geobacter, a typical model electro-active bacteria (EAB), was greatly enriched on the anode of UCW-MFC (Mn). In contrast, the relative abundance of methanogens (Methanosaeta) was inhibited. PICRUSt analysis results further demonstrated that the abundance of extracellular electron transfer related functional genes was increased, but the methanogen function genes and multiple antibiotic resistance genes in UCW-MFC (Mn) anode were reduced. Redundancy analyses indicated that substrate type, antibiotic accumulation and bacterial community were the main factors affecting ARGs. Moreover, the potential ARG hosts and the co-occurrence of ARGs and intI1 were revealed by network analysis.

Semi-continuous feeding combined with traditional domestication improved anaerobic performance during treatment of cassava stillage

The effects of feeding pattern were studied during anaerobic digestion of cassava stillage. Continuous feeding and semi-continuous feeding, were adopted in two internal circulation (IC) reactors (A and B, respectively). The reactors showed different performance in the anaerobic digestion process. The maximum difference, was observed for the soluble chemical oxygen demand (SCOD) removal rate and the biogas production, which were 23.2% and 95.7 L/2 d higher in reactor B than reactor A, respectively. The overall VFAs level of reactor A was higher than that of reactor B. Microbial community analyses indicated that the abundances of dominant bacteria and methanogens became higher in the reactor B than in reactor A as the digestion process progressed. Hence, semi-continuous feeding showed superior performance than continuous feeding for SCOD removal rate, biogas production, and the relative abundances of methanogens in the case of high OLR.

Effect of the macroalgae Asparagopsis taxiformis on methane production and rumen microbiome assemblage

BackgroundRecent studies using batch-fermentation suggest that the red macroalgae Asparagopsis taxiformis has the potential to reduce methane (CH4) production from beef cattle by up to ~ 99% when added to Rhodes grass hay; a common feed in the Australian beef industry. These experiments have shown significant reductions in CH4 without compromising other fermentation parameters (i.e. volatile fatty acid production) with A. taxiformis organic matter (OM) inclusion rates of up to 5%. In the study presented here, A. taxiformis was evaluated for its ability to reduce methane production from dairy cattle fed a mixed ration widely utilized in California, the largest milk producing state in the US.ResultsFermentation in a semi-continuous in-vitro rumen system suggests that A. taxiformis can reduce methane production from enteric fermentation in dairy cattle by 95% when added at a 5% OM inclusion rate without any obvious negative impacts on volatile fatty acid production. High-throughput 16S ribosomal RNA (rRNA) gene amplicon sequencing showed that seaweed amendment effects rumen microbiome consistent with the Anna Karenina hypothesis, with increased β-diversity, over time scales of approximately 3 days. The relative abundance of methanogens in the fermentation vessels amended with A. taxiformis decreased significantly compared to control vessels, but this reduction in methanogen abundance was only significant when averaged over the course of the experiment. Alternatively, significant reductions of CH4 in the A. taxiformis amended vessels was measured in the early stages of the experiment. This suggests that A. taxiformis has an immediate effect on the metabolic functionality of rumen methanogens whereas its impact on microbiome assemblage, specifically methanogen abundance, is delayed.ConclusionsThe methane reducing effect of A. taxiformis during rumen fermentation makes this macroalgae a promising candidate as a biotic methane mitigation strategy for dairy cattle. But its effect in-vivo (i.e. in dairy cattle) remains to be investigated in animal trials. Furthermore, to obtain a holistic understanding of the biochemistry responsible for the significant reduction of methane, gene expression profiles of the rumen microbiome and the host animal are warranted.

Biochemical Conversion and Microbial Community in Response to Ternary pH Buffer System during Anaerobic Digestion of Swine Manure

The ternary pH buffer system with ammonia-carbonates-volatile fatty acids (VFAs) is essential to anaerobes for bioenergy recovery via anaerobic digestion (AD). However, ammonia and VFAs are recognized as potential inhibitors that depress methanogenesis. In this study, biochemical conversion and the microbial community in batch AD at total solid (TS) from 4% to 14% were investigated to reveal their response to the ternary pH buffer system. The rapid ammonia release, probably promoted by Anaerosphaera and Eubacterium inferred from the concurrent peak of their relative abundance, triggered total ammonia (TAN) inhibition with the accumulation of VFAs in the start-up stage of high solid AD (HSAD, TS ≥ 8%). Along with evolution of the microbial community to resist high TAN and VFAs, methanogenesis recovered with improved degradation of VFAs and reduction of COD. When exposed to 3500 mg·N·L−1 TAN at 8% TS, aceticlastic Methanosarcina became dominant first and then together with hydrogenotrophic Methanoculleus, achieved the optimal biochemical conversion. While in HSAD at 11–14% TS, the main pathway of methanogenesis appeared to have shifted from the aceticlastic pathway to the hydrogenotrophic pathway, as inferred by changes in the relative abundance of methanogens, and this could have been induced by the increasing concentration of high free ammonia (FAN, ≥588 mg·N·L−1). Although the anaerobes had acclimatized to high TAN, the propionate-oxidizing bacteria and acetate-oxidizing bacteria might have again been inhibited by high FAN, frustrating the H2 supply for FAN-tolerant Methanoculleus and causing an 8.2–11.3% depression of COD reduction (mainly propionate residual).

Anaerobic co-digestion of wastes from fruit processing and activated sludge reactor in juice production industry

Anaerobic co-digestion of wastes from fruit processing wastes (FPW) and activated sludge reactor (WAS) were studied in a semi-continuous digester at 30-32 °C during 193 days. The best results of biogas yield and volumetric biogas production were 635.4 L·kg−1 total volatile solids (TVS) fed and 473.9 L·m−3·d−1, respectively, obtained when FPW:WAS ratio applied was 1:1 and retention time was 40 days. Biogas yield and volumetric biogas production increased 210% and 357%, respectively, when FPW:WAS ratio was changed from 0:1 to 1:1; and hydrolysis was also improved since TVS removal efficiency achieved nearly 75%. The microbiological analysis of samples taken at day 70, 135 and 168 supported these results with increased FPW:WAS ratio. Both the relative abundance of methanogens and hydrolytic bacteria were observed to increase significantly; in the case of hydrolysis, the percentage of Chloroflexi relative abundance increased from 17% at day 70 to 50% at day 168.

Increased soil methane emissions and methanogenesis in oil contaminated areas

AbstractCrude oil exploration and related activities cause severe soil contamination and land degradation. However, how soil CH4 and CO2 fluxes respond to oil contamination is poorly understood. To address this question, we conducted in situ investigation of CH4 and CO2 emissions in the Shengli Oilfield, China. CH4 emissions from contaminated soils were 60–1,800 μg·m−2·hr−1, much higher than those from uncontaminated soils (29–33 μg·m−2·hr−1). CO2 fluxes of 2–78 mg·m−2·hr−1 were lower from contaminated soils compared with uncontaminated controls (78–104 mg·m−2·hr−1). The variance of CH4 and CO2 fluxes could be explained to 78.0% by soil properties and oil well age (p &lt; .001) as suggested by the redundancy analysis and the variance partitioning analysis. On the basis of the Illumina MiSeq sequencing of the archaeal 16S rRNA gene, the relative abundance of methanogens over archaea increased by 8 times in contaminated soils compared with that in the uncontaminated soils, suggesting enhanced methanogenesis processes. The proportion of hydrogenotrophic methanogens over the total methanogens increased from 35% in the uncontaminated soil to 43% in the contaminated soils, consistent with the higher apparent fractionation factor (αC) in the stable isotope analysis. Both microbial and isotopic results suggested that the hydrogenotrophic methanogenesis relatively enhanced with the oil contamination, with less dominance of the acetoclastic methanogenesis. The dramatically increased CH4 emissions under oil contamination call for great attention as a potentially important anthropogenic source of CH4 in the atmosphere.