Relative Abundance Of Common Species Research Articles

Comparison of alive and dead benthic foraminiferal fauna off the Changjiang Estuary: Understanding water-mass properties and taphonomic processes

Benthic foraminifera (BF) are utilized in palaeo-environmental reconstruction based on our understanding of how living individuals respond to environmental variations. However, there is still a lack of empirical insight into how non-environmental factors, such as taphonomic processes, influence the preservations of fossil BF in strata. In this study, we compare the spatial distribution and composition of alive and dead BF fauna in surface sediments to elucidate how well fossil foraminiferal fauna mirror quasi-contemporary alive BF groups indicative of different water masses off a mega-river (Changjiang) estuary, which is characterized by intense and complex river-sea interactions. On-site measurements of bottom water salinity, temperature, and dissolved oxygen were conducted in the summer to determine water mass properties. A same-site comparison of alive (Rose Bengal stained) and dead foraminiferal fauna in surface sediment samples over 73 stations was then carried out. Q-mode Hierarchical clustering analysis was used to differentiate foraminiferal assemblages based on the relative abundance of common species. Three distinct regions with different water-mass properties were identified. The distribution pattern of dead foraminiferal fauna is mainly inherited from alive fauna, while the density and diversity of the dead fauna were found to be higher than those of the alive one. Both alive and dead fauna were clustered into four assemblages. A few common alive species (small-agglutinated and thin-calcareous) were rarely found in dead fauna, and a few common dead species (preferring low temperature and indicating allochthonous sources) were rarely present in alive fauna. The alive foraminiferal abundance and diversity were mainly determined by food resources and environmental properties of salinity and temperature. Alive foraminiferal assemblages were separated by different water masses determined by river-sea interactions off the Changjiang Estuary. The “time-averaging” effect was found to be responsible for the higher density and diversity of the dead fauna. Disintegration of agglutinated tests, dissolution of calcareous tests and selective transportation were observed to contribute to the different species compositions between the alive and dead fauna. Nevertheless, indicative species-environment relations in alive and taphocoenose fauna were found to be almost homologous among most common species. This suggests that distinct benthic foraminiferal assemblages can be used to effectively differentiate between different water masses in the study coastal seas.

SPECIES OF INSECTS HARMFUL TO LEAVES, BUDS, AND FLOWERS IN THE APPLE ORCHARDS OF SOUTHERN ROMANIA

The aim of the study was to update knowledge of the complex of harmful species that damage apple tree buds, flowers and leaves in orchards in the southern part of Romania. The pest fauna identified by visual observation and collection of infested plant material in the 2021 study, performed in 3 orchards, was represented by a total of 4 species of beetles: Phyllobius pomaceus, P. oblongus, Anthonomus pomorum (Coleoptera: Curculionidae) and Tropinota (Epicometis) hirta (Coleoptera:Scarabaeidae) and 12 species of moths: Phyllonorycter blancardella (Lepidoptera: Gracillariidae), Stigmella malella (Lepidoptera:Nepticulidae), Hyphantria cunea (Lepidoptera:Erebidae), Leucoptera malifoliella, Lyonetia clerkella (Lepidoptera: Lyonetiidae), Adoxophyes orana, Archips podanus, A. rosanus, Clepsis consimilana, Pandemis heparana, P. cerasana and Hedia nubiferana (Lepidoptera:Tortricidae). The report reveals the variations among orchards, in terms of species composition, relative abundance of common species and their importance for the region.

Long-Term Changes of Species Composition and Functional Traits of Epiphytic Diatoms in the Szigetköz Region (Hungary) of the Danube River

Here we report the results of our decades-long study on epiphytic communities from two tributary systems of the Szigetköz section of the Danube River. The main goal of the investigation was to detect changes in the epiphytic communities at structural (core species, changes in the relative abundance of common species) and functional (trait changes) levels as a result of the most important anthropogenic effects on Szigetköz, i.e., hydro-morphological modifications. We also examined the impact of rehabilitation on the tributary systems in terms of ecological potential. We discovered that mainly motile diatom species characterized the epiphyton due to reduced water volume were introduced into the tributary system after the diversion of the Danube. The ecosystem stabilized in the rehabilitated section, while the non-rehabilitated section showed a worsening tendency, mainly in the parapotamic branches. Our long-term data sets may provide a good basis for comparisons of different aquatic ecosystems, to define changes in the abundance of core species and in the structure of community in response to different anthropogenic pressures. It is fundamental to determine adaptive traits in assessing the impact of global warming stressors on biodiversity.

Impacts of White-Nose Syndrome Observed During Long-Term Monitoring of a Midwestern Bat Community

Abstract White-nose syndrome (WNS) is an emerging fungal disease suspected to have infected Indiana caves in the winter of 2010–2011. This disease places energetic strains on cave-hibernating bats by forcing them to wake and use energy reserves. It has caused >5.5 million bat deaths across eastern North America, and may be the driving force for extinction of certain bat species. White-nose syndrome infection can be identified in hibernacula, but it may be difficult to determine whether bats in a particular area are affected if no known hibernacula exist. Thus, our aim was to use long-term monitoring data to examine changes in a summer population away from hibernacula that may be attributable to WNS effects during winter. We used capture data from a long-term bat-monitoring project in central Indiana with data from 10 repeatedly netted sites consistent across all reproductive periods. We modeled capture data by WNS exposure probability to assess changes in relative abundance of common species and reproductive classes as WNS exposure probability increases. We base exposure probability on a cokriging spatial model that interpolated WNS infection from hibernaculum survey data. The little brown bat Myotis lucifugus, the Indiana bat M. sodalis, and the tri-colored bat Perimyotis subflavus suffered 12.5–79.6% declines; whereas, the big brown bat Eptesicus fuscus, the eastern red bat Lasiurus borealis, and the evening bat Nycticeius humeralis showed 11.5–50.5% increases. We caught more nonreproductive adult females and postlactating females when WNS exposure probabilities were high, suggesting that WNS is influencing reproductive success of affected species. We conclude that, in Indiana, WNS is causing species-specific declines and may have caused the local extinction of M. lucifugus. Furthermore, WNS-affected species appear to be losing pups or forgoing pregnancy. Ongoing long-term monitoring studies, especially those focusing on reproductive success, are needed to measure the ultimate impacts of WNS.

What is the most efficient and effective method for long-term monitoring of alpine tundra vegetation?

Nondestructive estimations of plant community characteristics are essential to vegetation monitoring programs. However, there is no universally accepted method for this purpose in the Arctic, partly because not all programs share the same logistical constraints and monitoring goals. Our aim was to determine the most efficient and effective method for long-term monitoring of alpine tundra vegetation. To achieve this, we established 12 vegetation-monitoring plots on a south-facing slope in the alpine tundra of southern Yukon Territory, Canada. Four observers assessed these plots for vascular plant species abundance employing three methods: visual cover (VC) and subplot frequency (SF) estimation and modified point-intercept (PI) (includes rare species present but not intersected by a pin). SF performed best in terms of time required per plot and sensitivity to variations in species richness. All methods were similarly poor at estimating relative abundance for rare species, but PI and VC were substantially better at high abundances. Differences among methods were larger than among observers. Our results suggest that SF is best when the monitoring focus is on rare species or species richness across extensive areas. However, when the focus is on monitoring changes in relative abundance of common species, VC or PI should be preferred.

Changes in Species Richness, Abundance, and Composition of Arboreal Twig‐nesting Ants Along an Elevational Gradient in Coffee Landscapes

AbstractThe distribution, diversity, and assembly of tropical insects have long intrigued ecologists, and for tropical ants, can be affected by competitive interactions, microhabitat requirements, dispersal, and availability and diversity of nesting sites. Arboreal twig‐nesting ants are limited by the number of hollow twigs available, especially in intensive agricultural systems. Ant diversity and abundance may shift along elevation gradients, but no studies have examined if the proportion of occupied twigs or richness of arboreal twig‐nesting ants vary with elevation. In coffee agroecosystems, there are over 40 species of arboreal twig‐nesting ants. We examined communities of twig‐nesting ants in coffee plants along an elevational gradient to answer the following questions: (1) Do species richness and colony abundance decline with elevation or show a mid‐elevation peak? (2) Does community composition change with elevation? (3) Is elevation an important predictor of change in ant abundance, richness, and relative abundance of common species? We surveyed 42 10 × 10 m plots in 2013 from 450 to1550 m elevation across a coffee landscape in Chiapas, Mexico. We sampled a total of 2211 hollow coffee twigs, 77.1 percent of which were occupied by one of 28 species of ants. Pseudomyrmex simplex was more abundant in lower elevations, whereas Pseudomyrmex ejectus dominated in high elevations. Species richness and the percent of occupied hollow twigs both peaked at mid‐elevations (800–1050 m). In sum, we found that species richness, abundance, and composition of arboreal twig‐nesting ants shift with elevation. These findings may provide important insights for understanding ant communities in coffee agroecosystems.

Sampling procedures and species estimation: testing the effectiveness of herbarium data against vegetation sampling in an oceanic island

Questions: What is the relationship between species assemblages in herbarium collections and species abundances in the field, and how trustworthy are herbarium data in vegetation science? Location: Guadalupe Island, Baja California, Mexico. Methods: We compared species-abundance distribution and evenness in 110 vegetation plots in Guadalupe Island against data from four herbaria. We tested whether the relative frequencies derived from herbarium specimens differed significantly from species frequencies in the field. We compared the rarefaction curves for both field and herbarium data sets, and tested whether taxonomic collectors accumulated new species at a higher rate than that observed in ecological plot sampling. Results: At any given sampling effort, the total number of observed species was higher in herbarium data. The relative abundance of common species in the field was higher, and the evenness of the distribution was lower, than in herbarium data. There was no significant correlation between species abundances in the field and in the herbaria. By selectively targeting rare species, collectors accumulate previously unseen species much faster than through ecological sampling. Conclusions: Because collectors aim for the rarer species and avoid the more common ones, the relative abundance of species in herbarium collections cannot be interpreted as a predictor of their true abundance in the field. Any statistical procedure that requires the sample to be representative of the true abundance distribution is likely to show errors when applied to herbarium data. However, because collectors actively search for rare species their rate of species accumulation is higher and their floristic lists are more complete than those obtained through ecological field sampling.

The spatial heterogeneity of diatoms in eight southeastern Ohio streams: how far does a single riffle reach?

Periphyton is a commonly used biomonitoring tool for streams. Often only one or few riffles are sampled and assumed to be representative of a stream reach. Current literature focuses on periphyton heterogeneity at small scales, on individual rocks within a riffle, and larger scales, within watersheds or ecoregions. The intermediate scales, within single riffles or among riffles, have not been adequately addressed. The purpose of this research was to determine how many riffles must be sampled in order to represent a reach and whether the number of necessary riffles varied with stream health. Since periphyton is sensitive to habitat change, it was hypothesized that heterogeneity would be primarily partitioned among riffles. Eight to ten consecutive riffles were sampled at eight individual stream reaches. Sampled reaches were categorized based on previously collected bioassesment data: three non-attaining, three partially-attaining, and two fully-attaining water quality standards as defined by the Ohio Environmental Protection Agency. Data were analyzed using the Bray-Curtis Similarity Index, Hill’s N2 dominance diversity index, and the Acid Mine Drainage Diatom Index of Biotic Integrity. Diatoms appeared to be patchily distributed within a reach. This patchiness often led to varied relative abundance of common species and the introduction or loss of rare species among riffles. To account for this variation within a reach, at least two riffles should be sampled. However, a multimetric index may correctly classify a stream based on a one-riffle sample. Variation does not appear to correspond directly to stream health, but to species richness and diversity.

The Role of Substrate Type on Benthic Diatom Assemblages in the Daly and Roper Rivers of the Australian Wet/Dry Tropics

The selection of one or more river substrata for the collection of benthic diatoms is fundamental to any monitoring or research programme because it can potentially bias the diatom data set. In the wet/dry tropics of Australia, where the use of benthic diatoms for river health assessment is in its infancy, the comparability of diatom assemblages on river substrata has been assessed. Benthic diatoms were sampled from seven river sites, with a range of ionic chemistries (conductivities 27–6500 μS cm−1) but low nutrient concentrations. At each site, triplicate samples were collected from 3 to 6 substrata. The diatom assemblages sampled were: epilithon (assemblages on rock), epiphytes on macroalgae and macrophytes, epidendron (assemblages on wood), epipsammon (assemblages on sand), epipelon (assemblages on mud) and bacterial slime. The variability between substrate assemblages, at each site, were assessed according to the following: (1) a multivariate analysis of diatom assemblages, (2) ANOVA tests of species richness, (3) ANOVA tests of the relative abundance of common species (defined by an abundance of at least 10% in any one sample), and (4) a comparison of the number of species unique to a substrate. A total of 198 taxa were identified, with some taxa common to temperate Australia. Common species were found on all substrata, with sometimes statistically significantly different relative abundances. Taxa unique to a substrate had low relative abundances (0.1–2%), were most often found on only one replicate, and are unlikely to be substrate specific because many are known to occur on other substrata. The assemblages on hard substrata, epilithon and epidendron, were found to be most similar. Diatom assemblages on macroalgal and macrophyte substrata, compared to other substrata, were highly variable. This is attributed to the loss of diatoms from grazing and sloughing, followed by recolonisation of newly exposed substrate. Other assemblages, notably epipsammon, were similar to epilithon and epidendron but sometimes differed in their relative abundance of common species. The principal finding of the study was the similarity of the epilithon and epidendron, which are considered to be indistinguishable. Rock and wood hard substrata can be substituted for one another during field surveys, thereby increasing the number of potential sample sites available for monitoring activities that standardise to a hard substrate.

SPATIOTEMPORAL RESPONSES OF REPTILES AND AMPHIBIANS TO TIMBER HARVEST TREATMENTS

We compared the influence of clearcut and selective timber harvest treatments on spatial and temporal variability of amphibians and reptiles in an east Texas bottomland hardwood forest. The dataset represented a time series of 5 years post-treatment. A total of 18,645 amphibians and reptiles was captured in 144 pitfall arrays. We used 9 plots (3 clearcut, 3 select cut, and 3 untreated). Each plot had 16 arrays and was bisected by 1 of 3 streams. Pitfall captures represented 46 species (16 amphibians, 30 reptiles). When analyzed with a traditional ANOVA approach, these data suggested an increase in reptile species richness in response to clearcut treatments; amphibian species richness did not respond to treatment. When analyzed as a time series, however, the data revealed fluctuations in site use by species and species groups, and these fluctuations were independent of treatment effects. Exploratory analyses of spatio-temporal dynamics showed that species richness and the relative abundance of common species displayed spatial patterns that remained consistent over time. In control and select cut treatments, spatial patterns of richness and abundance shifted over time and were not necessarily confined to areas adjacent to streams. In clearcuts, stationary habitat refugia were located within riparian management zones.

Latitudinal gradient of species diversity: multi‐scale variability in rocky intertidal sessile assemblages along the Northwestern Pacific coast

This study examined the latitudinal gradient of species diversity of rocky intertidal sessile assemblages on the slopes of rocks along the Northwestern Pacific coast of Japan, located between 31°N and 43°N, by explicitly incorporating an hierarchical spatial scale into the monitoring design. The specific questions were to examine: (1) whether there is a latitudinal gradient of regional diversity, (2) how spatial components of the regional diversity (local diversity and turnover diversity) vary with latitude depending on spatial scale, and (3) whether the latitudinal gradient differs between different measures of species diversity, i.e. species richness and Simpson’s diversity index. We measured coverage and the presence or absence of all sessile organisms in a total of 150 census plots established at five shores in each of six regions. The results showed that there were clear latitudinal gradients in regional species richness and in species turnover among shores. However, these patterns were not reflected in smaller-scale local species richness. For Simpson’s diversity index, there was no evidence of latitudinal clines either in regional diversity or in spatial components. These results suggest that relative abundance of common species does not vary along latitude, while the number of rare species increases with decreasing latitude.

Latitudinal gradient of species diversity: multi‐scale variability in rocky intertidal sessile assemblages along the Northwestern Pacific coast

AbstractThis study examined the latitudinal gradient of species diversity of rocky intertidal sessile assemblages on the slopes of rocks along the Northwestern Pacific coast of Japan, located between 31°N and 43°N, by explicitly incorporating an hierarchical spatial scale into the monitoring design. The specific questions were to examine: (1) whether there is a latitudinal gradient of regional diversity, (2) how spatial components of the regional diversity (local diversity and turnover diversity) vary with latitude depending on spatial scale, and (3) whether the latitudinal gradient differs between different measures of species diversity, i.e. species richness and Simpson's diversity index. We measured coverage and the presence or absence of all sessile organisms in a total of 150 census plots established at five shores in each of six regions. The results showed that there were clear latitudinal gradients in regional species richness and in species turnover among shores. However, these patterns were not reflected in smaller‐scale local species richness. For Simpson's diversity index, there was no evidence of latitudinal clines either in regional diversity or in spatial components. These results suggest that relative abundance of common species does not vary along latitude, while the number of rare species increases with decreasing latitude.