Reef Morphology Research Articles

A Comparative Crash-Test of Manual and Semi-Automated Methods for Detecting Complex Submarine Morphologies

Multibeam echosounders provide ideal data for the semi-automated seabed feature extraction and accurate morphometric measurements. In this study, bathymetric and raw backscatter data were initially used to manually delimit the reef morphologies found in an insular semi-enclosed gulf in the northern Aegean Sea (Gera Gulf, Lesvos Island, Greece). The complexity of this environment makes it an ideal area to “crash test” (test to the limit) and compare the results of the delineation methods. A large number of (more than 7000) small but prominent reefs were detected, which made manual mapping extremely time-consuming. Three semi-automated tools were also employed to map the reefs: the Benthic Terrain Modeler (BTM), Confined Morphologies Mapping (CoMMa), and eCognition Multiresolution Segmentation. BTM did not function properly with irregular reef footprints, but by modifying both the bathymetry and slope, the outcome was improved, producing accurate results that appeared to exceed the accuracy of manual mapping. CoMMa, a new GIS morphometric toolbox, was a “one-stop shop” that, besides generating satisfactory reef delineation results (i.e., detecting the same total reef area as the manual method), was also used to extract the morphometric characteristics of the polygons resulting from all the methods. Lastly, the Multiresolution Segmentation also gave satisfactory results with the highest precision. To compare the final maps with the distribution of the reefs, mapcurves were created to estimate the goodness-of-fit (GOF) with the Precision, Recall, and F1 Scores producing values higher than 0.78, suggesting a good detection accuracy for the semi-automated methods. The analysis reveals that the semi-automated methods provided more efficient results in comparison with the time-consuming manual mapping. Overall, for this case study, the modification of the bathymetry and slope enabled the results’ accuracy to be further enhanced. This study asserts that the use of semi-automated mapping is an effective method for delineating the geomorphometry of intricate relief and serves as a powerful tool for habitat mapping and decision-making.

Classification, density, and spatial distribution of polychaete reefs in the Coorong, South Australia

The cosmopolitan species Ficopomatus enigmaticus is one of the most prominent providers of polychaete reefs in shallow and brackish waters. The effects of polychaete reefs on the environment can be positive or negative subject to their structural complexity and vary with local environmental conditions and over time. The Coorong is a large temperate estuarine and lagoonal system with extensive polychaete reefs built by F. enigmaticus. The aims of this study were to (1) classify polychaete reefs based on size and morphology, (2) quantify reef density, (3) assess their spatial distribution and (4) assess the correlation between reefs (e.g., density, size) with the environmental gradient. Structural morphologies of F. enigmaticus were classified as either halo, circular, irregular, platform or fringing reef types. The largest densities of polychaete reefs were recorded in the vicinity of the mouth of the estuary with 224 reefs per ha compared to the lagoon (62 reefs per ha). The most common reef morphology was circular and largest sizes in the lagoon were positively correlated with salinity, chlorophyll a, TRIX (trophic index) and bicarbonate. The largest reef diameter recorded was 11.3 m, exceeding previously known F. enigmaticus circular reef formations globally. The growth of large circular reefs may have benefitted from low flows and eutrophic conditions in the Coorong during the last two decades. This study serves as an important baseline for future assessments of reef change in a Ramsar listed wetland. Furthermore, this study highlights reef characteristics of F. enigmaticus across an environmental gradient, which can be informative for the management of flow and eutrophication in estuaries and coastal lagoons.

Structure and diversity patterns of coralligenous cliffs across three ecoregions in the Central‐Western Mediterranean Sea

AbstractAimCoralligenous reefs are the main marine bioconstructions in terms of spatial distribution within the Mediterranean basin. Two distinct reef morphologies can be distinguished based on the surface and topographical features of the seafloor: cliffs developing vertical slopes and banks found on gently steep or horizontal bottoms. Despite their importance for monitoring and conservation efforts, observations regarding the variability of biogeographical patterns are scarce. Here, we aimed to assess the differences in the composition and structure of these cliffs across ecoregions and estimate the relative role of abiotic environmental features, geographic location, and connectivity in shaping diversity patterns.LocationThe study was carried out in the Central‐Western Mediterranean Sea. Samples were collected at 65 sites across the Algero‐Provençal Basin, the Ionian Sea and the Tyrrhenian Sea.MethodsWe assessed the composition and structure of coralligenous cliffs through photographic samplings collected by scuba divers. Patterns in α‐ and β‐diversity were associated with 9 abiotic environmental variables, latitudinal and longitudinal gradients, and connectivity measures using Generalized Additive (GAM) and Conditional Autoregressive (CAR) models.ResultsCoralligenous cliffs were primarily composed of algae and displayed a high degree of variability. The Partition Around Medoids (PAM) clustering method successfully delineated seven distinct clusters with a non‐uniform distribution within the studied ecoregions. The α‐diversity increased in eastern and northern sites and with phosphate concentration, while decreased with temperature, chlorophyll and nitrates concentration. β‐diversity at the site level increased with temperature, while it was negatively affected by northward current speed and chlorophyll concentration. Moveover, β‐diversity increased within connected sites.Main ConclusionsCoralligenous cliff diversity responds both to the physico‐chemical features of the habitat and between‐habitats connectivity. However, our findings suggest that small‐scale abiotic and biotic processes could contribute to explaining the variability observed. These findings can significantly enhance the monitoring and conservation efforts of this Mediterranean endemic ecosystem.

Benthic community structure and geomorphology of uncharted nearshore reefs in Kuantan coastal waters.

The nearshore reefs play several important ecosystem functions in marine environments, especially in coastal areas. Six relatively unknown nearshore reef sites were surveyed in the southern Kuantan coastal waters using the coral video transect (CVT) technique between April 2021 and September 2022 to estimate coral reef benthic components. Data analysis on coral reef benthic components indicated that these uncharted nearshore reefs have ‘fair’ coral cover with an average percentage of 39.4 % ± 17.8 in which ST 1 recorded the highest live coral cover coverage with 68.06 %. Abiotic components (sand and rock) were the second-most abundant and the coverage of dead coral was relatively low at all stations. A total of 33 coral genera were recorded in this study in which Porites, Acropora and Montipora mean percentage cover dominated most of the reef sites. Bathymetry data indicated that some of these uncharted reefs were located on submerged shoals with a depth range between 12 – 17 meters. The variation in benthic community composition observed among reef sites highlights the importance of location-specific management and conservation strategies.

Numerical study of wave-induced flow and wave set-up on a platform reef with steep slope

A 2D numerical model was developed in this study to investigate the wave-induced flow and wave set-up on a platform reef with steep frontal slope. The model solves the Reynolds Averaged Navier-Stokes (RANS) equations, with the classical k−ε turbulence closure model. The inflow boundary was modified by adding fluid replenishment to balance the water level in the numerical flume to ensure long-term simulation in the platform reef system. The numerical model was first validated by systematically comparing the wave breaking, flow structure, and mean water level against laboratory measurements. The validated model was employed to further analyze the detailed flow field and reveal the influence of the reef morphology on the wave-induced flow and wave set-up. The complex distribution pattern of wave-induced flow and wave set-up on the reef flat were found to be related to the Froude number. The results also reveal that reef slope and reef roughness will not only change the wave breaking morphology but also affect the distribution pattern of wave-induced flow and wave set-up.

Ecomorphodynamics of oyster reefs and their influence on oyster reef morphology

Over 85 % of oyster reefs have been lost globally due to disease, overharvesting, global warming, and pollution. Consideration of the ecosystem services provided by healthy oyster reefs (e.g., coastal protection, water purification and carbon burial) has driven recent research and restoration efforts worldwide. However, hydrodynamic studies, specifically looking at the effects of different levels of wave exposure on the ecomorphodynamics of oyster reefs, are scarce. In this study, we consider oyster reefs in microtidal estuaries under different levels of relative wave exposure to determine how hydrodynamics may shape reef morphology and how reef morphology affects wave dissipation. We quantify oyster reef morphology through spatial analysis, using morphometrics and spatial density and relate these to the ability of oyster reefs to dissipate wave energy. Field campaigns were undertaken at three microtidal sites in southeast Australia with different hydrodynamic exposure and morphology: Gamay (Botany Bay), Port Hacking and Crookhaven River. We found that reef morphology and orientation is related to estuarine hydrodynamic conditions and thus we propose an ecomorphodynamic model with a continuum of morphologies from sparse reefs aligned perpendicular to the tidal currents and incoming waves (patch reefs), through broken up barriers semi-aligned or obliquely to the tidal flows (string reefs), to the total barrier that exists under the lowest hydrodynamic conditions (fringing reefs). The highest dissipative ability of locally generated wind waves occurred at Crookhaven (patch reef, 165 kW/m2), and lowest at Gamay (string reef, 11.66 kW/m2). Our results suggest that reef morphology, and orientation to currents and waves, influence wave dissipation, and that hydrodynamic conditions in turn influence reef morphology. These findings are important to inform future reef restoration under increasingly severe climate change conditions to optimise ecosystem services on restored oyster reefs.

Numerical investigation of the restored oyster reef flow field with the lattice Boltzmann method

Oyster reefs play a dual role in the ecological and economic sustainability of global estuarine resources. Due to human activity and climate change, the prevalence of cosmopolitan oyster reefs has noticeably declined in recent decades, triggering a global restoration movement. However, the hydrodynamic functions of oyster reefs during and after restoration, particularly the impacts of growth and morphology on the flow field, remain poorly understood. This study employs the lattice Boltzmann method coupled with large-eddy simulation to simulate unidirectional flow around restored oyster reef models using the open-source Palabos library. It examines the effects of unidirectional flow velocity and reef morphology on hydrodynamic characteristics. The research analyzes spatial and temporal variations in velocity, vorticity, and turbulence structure around the reef. The findings indicated significant flow field differences between the initially restored reefs and those post-restoration. The dimensionless wake region scale parameters of the initially restored reefs exhibit hysteresis effects, generating larger turbulence during the post-recruitment stage than in the initial stage. Areas of high turbulence in the wake are associated with above-canopy flow, bypass flow, and within-canopy flow. The presence of gaps and branches in the reef leads to complex turbulence structures and irregular vortex shedding in the reef's wake at the post-recruitment stage. These results are valuable for assessing oyster reef resilience and planning effective restoration interventions.

Short-Term Spatiotemporal Variability in Seawater Carbonate Chemistry at Two Contrasting Reef Locations in Bocas del Toro, Panama

There is growing concern about the effects of ocean acidification (OA) on coral reefs, with many studies indicating decreasing calcium carbonate production and reef growth. However, to accurately predict how coral reefs will respond to OA, it is necessary to characterize natural carbonate chemistry conditions, including the spatiotemporal mean and variability and the physical and biogeochemical drivers across different environments. In this study, spatial and temporal physiochemical variability was characterized at two contrasting reef locations in Bocas del Toro, Panama, that differed in their benthic community composition, reef morphology, and exposure to open ocean conditions, using a combination of approaches including autonomous sensors and spatial surveys during November 2015. Mean and diurnal temporal variability in both physical and chemical seawater parameters were similar between sites and sampling depths, but with occasional differences in extreme values. The magnitude of spatial variability was different between the two sites, which reflected the cumulative effect from terrestrial runoff and benthic metabolism. Based on graphical vector analysis of TA–DIC data, reef metabolism was dominated by organic over inorganic carbon cycling at both sites, with net heterotrophy and net calcium carbonate dissolution dominating the majority of observations. The results also highlight the potentially strong influence of terrestrial freshwater runoff on surface seawater conditions, and the challenges associated with evaluating and characterizing this influence on benthic habitats. The Bocas del Toro reef is a unique system that deserves attention to better understand the mechanisms that allow corals and coral reefs to persist under increasingly challenging environmental conditions.

Biogeochemical evidence of flow re-entrainment on the main fringing reef of La Reunion Island

Understanding factors influencing seawater chemistry variability in coral reef environments is a major challenge to improve predictions of their evolution in the context of ocean acidification. In this study, autonomous sensors for current speed and direction, photosynthetically active radiation (PAR), temperature, salinity, dissolved oxygen (DO) and pHT were deployed three times between 2021 and 2022 offshore and on three reef flat sites of the main fringing reef of La Reunion Island. Discrete sampling of seawater for DO, pHT and total alkalinity (TA) at different times of the day complemented the monitoring. Diurnal variation of those variables on the reef flat was mainly driven by benthic community metabolism but hydrodynamics and reef geomorphology played also a key role. DO and pHT variations were decoupled in time, especially at night when we observed DO rebounds while pHT values were stationary. The reef flat was also largely TA depleted compared to offshore waters. We hypothesize that the strong offshore-alongshore current redirected TA depleted water exiting from reef channels into the reef flat. This seawater re-entrainment could also explain specific variations of DO and pHT values. This result highlights the important role of reef geomorphology in modulating changes in seawater chemistry. Neglecting this phenomenon could lead to substantial errors in the estimation of carbonate budgets when using the Eulerian approach.

Ag@rGO coral reef morphology exhibits excellent optical properties and photocatalytic activity against methyl orange under sunlight

The modified hummers method was used to synthesize GO, and the coral reef shape morphology of Ag@rGO was synthesized through the chemical reduction method. As-synthesized GO, rGO, Ag NPs, and Ag@rGO were characterized using various characterization techniques such as Fourier transform infrared spectroscopy (FTIR), X-ray diffraction (XRD), Raman spectra, UV–Vis diffuse reflectance spectroscopy (UV-DRS), X-ray photoelectron spectrometer (XPS), N2 adsorption-desorption isotherms (BET), liquid chromatography with mass spectrometry LCMS, Moreover, thermal stability was studied using a thermogravimetric analyzer (TGA). The growth size, shape, and extent were studied using transmission electron microscopy (TEM) and field emission scanning electron microscopy (FESEM). The obtained material was partially in de-agglomerated and agglomerated form, and aggregation was due to electrostatic forces of attraction. Besides this, the synthesized GO (70 %), rGO (85 %), Ag NPs (92 %), and Ag@rGO (99 %) were utilized to investigate photocatalytic activity for the degradation of Methyl orange dye (MO) under sunlight. Ag@rGO shows effective catalytic activity as it degrades the azo dye effectively. The degradation was found to be maximum using Ag@rGO, showing 99 % (120 min).

A Demonstration of the Capability of Low-Cost Hyperspectral Imaging for the Characterisation of Coral Reefs

The use of hyperspectral imaging in marine applications is limited, largely due to the cost-prohibitive nature of the technology and the risk of submerging such expensive electronics. Here, we examine the use of low-cost (<5000 GBP) hyperspectral imaging as a potential addition to the marine monitoring toolbox. Using coral reefs in Bermuda as a case study and a trial for the technology, data was collected across two reef morphologies, representing fringing reefs and patch reefs. Hyperspectral data of various coral species, Montastraea cavernosa, Diploria labyrinthiformis, Pseudodiploria strigosa, and Plexaurella sp., were successfully captured and analyzed, indicating the practicality and suitability of underwater hyperspectral imaging for use in coral reef assessment. The spectral data was also used to demonstrate simple spectral classification to provide values of the percentage coverage of benthic habitat types. Finally, the raw image data was used to generate digital elevation models to measure the physical structure of corals, providing another data type able to be used in reef assessments. Future improvements were also suggested regarding how to improve the spectral data captured by the technique to account for the accurate application of correction algorithms.

Bio-physical determinants of sediment accumulation on an offshore coral reef: A snapshot study

Sediments are found on all coral reefs around the globe. However, the amount of sediment in different reservoirs, and the rates at which sediments move between reservoirs, can shape the biological functioning of coral reefs. Unfortunately, relatively few studies have examined reef sediment dynamics, and associated bio-physical drivers, simultaneously over matching spatial and temporal scales. This has led to a partial understanding of how sediments and living reef systems are connected, especially on clear-water offshore reefs. To address this problem, four sediment reservoirs/sedimentary processes and three bio-physical drivers were quantified across seven different reef habitats/depths at Lizard Island, an exposed mid-shelf reef on the Great Barrier Reef. Even in this clear-water reef location a substantial load of suspended sediment passed over the reef; a load theoretically capable of replacing the entire standing stock of on-reef turf sediments in just 8 h. However, quantification of actual sediment deposition suggested that just 2 % of this passing sediment settled on the reef. The data also revealed marked spatial incongruence in sediment deposition (sediment trap data) and accumulation (TurfPod data) across the reef profile, with the flat and back reef emerging as key areas of both deposition and accumulation. By contrast, the shallow windward reef crest was an area of deposition but had a limited capacity for sediment accumulation. These cross-reef patterns related to wave energy and reef geomorphology, with low sediment accumulation on the ecologically important reef crest aligning with substantial wave energy. These findings reveal a disconnect between patterns of sediment deposition and accumulation on the benthos, with the ‘post-settlement’ fate of sediments dependent on local hydrodynamic conditions. From an ecological perspective, the data suggests key contextual constraints (wave energy and reef geomorphology) may predispose some reefs or reef areas to high-load turf sediment regimes.

The global biogeography of reef morphology

AbstractAimThe Caribbean and Indo‐Pacific are separate biogeographical realms with distinct biogeographical and evolutionary histories, a 10‐fold difference in biodiversity, and highly disparate sea‐level histories. Since reef morphology often reflects interactions between biological activity and biogeographical history, including sea levels, the widths of shallow coral reef habitats are likely to differ markedly between realms, with ramifications for numerous ecosystem functions. Our goal, therefore, was to assess the impact of global‐scale biogeographical and evolutionary histories on coral reef habitats. Specifically, are Indo‐Pacific reefs wider than their Caribbean counterparts?LocationGlobal.Time PeriodModern.Major Taxa StudiedCoral reefs.MethodsWe used the Allen Coral Atlas, a global reef mapping system (3 m pixel resolution), to examine 3765 transects, 3 km long and 1 km apart, on 60 reefs across the two realms, quantifying shallow reef habitat widths (Inner and Outer Reef Flat, and Reef Crest) using ArcGIS.ResultsShallow reef habitat widths were strikingly similar between the Caribbean and Indo‐Pacific. Estimated modal widths diverged by just 37 m; means by just 122 m. Although shallow reef zones appeared to be wider in the Indo‐Pacific, habitat widths on atolls were almost identical across realms (means varying by less than 8 m).Main ConclusionsOur remote sensing approach provides a global description of the biogeography of coral reefs as biogenic structures. Furthermore, we can assess the relative importance of realm‐wide differences in coral diversity and sea‐level history on reef growth. The striking similarity of reef widths across realms suggests that reef growth (net reef accretion) is largely independent of coral diversity, or sea‐level history, and that other factors may have played a major role in constraining shallow reef widths. These factors may include geomorphology (e.g. antecedent topography and historical accommodation space) and, once at sea level, self‐limiting local hydrodynamics.

Geomorphology of coralligenous reefs offshore southeastern Sicily (Ionian Sea)

ABSTRACT Coralligenous (C) includes calcareous build-ups of biogenic origin, formed since the Holocene transgression. Peculiar columnar-shaped C outcrops were documented offshore Marzamemi village (SE Sicily, Ionian Sea), although the actual extension and distribution were not assessed. Project ‘CRESCIBLUREEF’ produced a new, 17 km2 high-resolution bathymetric map, leading to good knowledge about their extent in this area. C bioconstructions are largely distributed along two depth ranges 36–42 m and 86–102 m water depth. By coupling the documented uplift rate in this region and the Holocene sea-level curve, we were able to interpret the distribution of C outcrops over terraces. However, additional investigation is required to understand: (1) the role of the inherited continental shelf landscape, in creating a favorable substrate for the settlement and growth of C habitats during the Holocene, and (2) the extent to which C bioconstructions can impact the evolution of present-day continental shelf landforms and landscapes.

Using Drone Imagery to Map Intertidal Oyster Reefs along Florida’s Gulf of Mexico Coast

Eastern oyster (Crassostrea virginica) reefs offer vital ecosystem services and support economically and culturally important fisheries. However, environmental and anthropogenic stressors have led to significant decline in oyster reef coverage globally and locally in places like the Suwannee Sound in Florida, USA. Current monitoring methods are insufficient for timely and accurate assessment of oyster resources in the region. Here we demonstrate how drone imagery can be used to delineate intertidal oyster reef coverage rapidly and reliably. The high spatial resolution offered by drone imagery enables accurate delineations. We use a segmentation algorithm to delineate reefs, which produces consistently detailed outlines that are more representative of reef morphology than manual delineations. In total, 1,394 reefs were delineated, which corresponds with 497, 670 m2 of reef area. Of the delineated reefs, 236 (17%) were newly mapped, aligning with 19,848 m2 of newly mapped intertidal oyster reef habitat. The overlapping drone imagery also enabled the production of digital surface models, which were used to calculate volume to area ratio as an indicator of reef condition. These delineations and features serve as accurate baseline data that can be compared to future surveys to monitor how reefs are changing over time in the Suwannee Sound. These methods can also be expanded to other geographical areas and can aid in identifying early signs of decline in oyster reefs.

A Numerical Study on the Responses of Wave-Driven Circulation to Varying Incident Wave Forcing and Reef Morphology in A Reef-Lagoon-Channel System

A Numerical Study on the Responses of Wave-Driven Circulation to Varying Incident Wave Forcing and Reef Morphology in A Reef-Lagoon-Channel System

Local-scale feedbacks influencing cold-water coral growth and subsequent reef formation

Despite cold-water coral (CWC) reefs being considered biodiversity hotspots, very little is known about the main processes driving their morphological development. Indeed, there is a considerable knowledge gap in quantitative experimental studies that help understand the interaction between reef morphology, near-bed hydrodynamics, coral growth, and (food) particle transport processes. In the present study, we performed a 2-month long flume experiment in which living coral nubbins were placed on a reef patch to determine the effect of a unidirectional flow on the growth and physiological condition of Lophelia pertusa. Measurements revealed how the presence of coral framework increased current speed and turbulence above the frontal part of the reef patch, while conditions immediately behind it were characterised by an almost stagnant flow and reduced turbulence. Owing to the higher current speeds that likely promoted a higher food encounter rate and intake of ions involved in the calcification process, the coral nubbins located on the upstream part of the reef presented a significantly enhanced average growth and a lower expression of stress-related enzymes than the downstream ones. Yet, further experiments would be needed to fully quantify how the variations in water hydrodynamics modify particle encounter and ion intake rates by coral nubbins located in different parts of a reef, and how such discrepancies may ultimately affect coral growth. Nonetheless, the results acquired here denote that a reef influenced by a unidirectional water flow would grow into the current: a pattern of reef development that coincides with that of actual coral reefs located in similar water flow settings. Ultimately, the results of this study suggest that at the local scale coral reef morphology has a direct effect on coral growth thus, indicating that the spatial patterns of living CWC colonies in reef patches are the result of spatial self-organisation.

Foundation filling performance of calcareous soil on coral reefs in the South China Sea

Atoll reef flats in the South China Sea are ideal sites for land reclamation and engineering construction. Calcareous soil deposited in atoll lagoons is an excellent filling material for land reclamation. This brittle material with irregular particle shapes is prone to obvious particle breakage under impact or vibration loads. First, this manuscript introduced the geomorphology and geological conditions of coral reefs, and explored the selection of reclamation sites and the source of filling materials. Then, compaction characteristics of calcareous soil were studied, and particle breakage was analyzed. On this basis, the optimal compaction test method was proposed based on the test results. Finally, a new method of “impact rolling + water spray” for coarse-grained calcareous soil, which proved effective in engineering practice in the South China Sea, was put forward. According to in-situ test results, after 20 passes of “impact rolling + water spray” on calcareous soil foundation, the compactness within the depth range of 1.0 m exceeded 80%; the foundation compactness at 0.3 m, 0.7 m, and 1.0 m deep increased by 8.4%, 4.8%, and 4.1%, respectively. This method significantly improved foundation compaction efficiency, offering important references for the compaction treatment of coarse-grained calcareous soil in coral reef regions.

Investigation on the reconstruction of wave bimodal spectrum in the lagoon near islands and reefs

Due to the intricate topography and geomorphology of coral reefs, waves propagating from deep water areas to transitional or shallow water near islands and reefs will exhibit features of wave spectra that are very different from those in the deep sea. Thus, a reconstruction of the wave spectra is necessary. In this study, double Gaussian functions are first proposed to identify the characteristic frequencies of wave bimodal spectra, such as peak frequencies corresponding to the low frequency part and high frequency part, and separation frequencies differentiating between the low frequency part and the high frequency part, based on the observed data of wave spectra in the lagoon near islands and reefs of the South China Sea (SCS). The wave bimodal spectra close to the islands and reefs are then rebuilt using the Ochi-Hubble spectrum type. The high frequency and low frequency portions of the bimodal wave spectra are used to determine the significant wave heights, peak frequency and shape characteristics, respectively. The wave motions exhibit basically linear characteristics when two typical sea conditions, such as summer typhoon waves and winter Northeast monsoon waves, are investigated in detail. The superposition of wind waves and swells on the one hand, and the presence of the bottom on the other, have an impact on the generation of the bi-modal spectrum. The bi-modal spectra that were reconstructed and those that were observed have a correlation coefficient that is greater than 90%. The study on the reconstruction of the bimodal spectrum in the paper will provide a reference for the description of the bimodal spectrum near islands and reefs.

Contrasting hydrodynamic regimes of submerged pinnacle and emergent coral reefs

Hydrodynamics on coral reefs vary with depth, reef morphology and seascape position. Differences in hydrodynamic regimes strongly influence the structure and function of coral reef ecosystems. Submerged coral reefs on steep-sided, conical bathymetric features like seamounts experience enhanced water circulation as a result of interactions between currents and the abrupt physical structure. There may also be similar interactions between smaller pinnacles and regional water currents in offshore locations (crests > 10 m), while shallow reefs (crests <10 m) may be more subject to surface currents driven by wind, waves and tide. Here we tested whether coral pinnacles experienced stronger and more variable currents compared to emergent reefs at the same depth in both nearshore and offshore positions. Current speeds and temperature were monitored for 12 months at 11 reefs, representing the three different reef categories: submerged offshore pinnacles, emergent offshore reefs and emergent nearshore reefs. We found different patterns in current speeds and temperature among reef types throughout the year and between seasons. Submerged pinnacles exhibited stronger, more variable current speeds compared to both near and offshore emergent reefs. We found seasonal changes in current speeds for pinnacle and nearshore reefs but no variation in current strength on offshore reefs. Whilst instantaneous current directions did reflect the seascape position of individual sites, there was no difference in the directional variability of current speeds between reef types. Annual daily average temperatures at all reef types were not strongly seasonal, changing by less than 2 °C throughout the year. Daily temperature ranges at specific sites however, exhibited considerable variability (annual range of up to 6.5 °C), particularly amongst offshore emergent reefs which experienced the highest temperatures despite greater exposure to regional-scale circulation patterns. Additionally, we found a consistent mismatch between satellite sea surface temperatures and in-situ temperature data, which was on average 2 °C cooler throughout the annual study period. Our results suggest that distinct hydrodynamic processes occur on smaller submerged structures that are physically analogous to seamounts. Our findings highlight important nuances in environmental processes that occur on morphologically distinct coral reef habitats and these are likely to be important drivers for the community dynamics of organisms that inhabit these reefs.