Reduced Nutrient Availability Research Articles

Importance of Dark Septate Endophytes in Agriculture in the Face of Climate Change.

Climate change is a notable challenge for agriculture as it affects crop productivity and yield. Increases in droughts, salinity, and soil degradation are some of the major consequences of climate change. The use of microorganisms has emerged as an alternative to mitigate the effects of climate change. Among these microorganisms, dark septate endophytes (DSEs) have garnered increasing attention in recent years. Dark septate endophytes have shown a capacity for mitigating and reducing the harmful effects of climate change in agriculture, such as salinity, drought, and the reduced nutrient availability in the soil. Various studies show that their association with plants helps to reduce the harmful effects of abiotic stresses and increases the nutrient availability, enabling the plants to thrive under adverse conditions. In this study, the effect of DSEs and the underlying mechanisms that help plants to develop a higher tolerance to climate change were reviewed.

Abstract 388: Identifying synthetic lethalities in GCN2 KO tumors using an in vivo targeted CRISPRi screen

Abstract The integrated stress response (ISR) is an intracellular signaling pathway that fosters cell adaptation to diverse stresses. The ISR is mediated by a family of four eIF2 kinases that each sense distinct cellular stresses. Activation of the eIF2 kinases results in reprogrammed gene expression through translational and transcriptional mechanisms that help prevent stress damage. Previously, we reported that prostate cancer (PCa) cells rely on GCN2 eIF2 kinase for maintenance of amino acid (AA) homeostasis to sustain growth (Cordova et al., 2022 eLife 11:e81083). GCN2 inhibition through pharmacological or genetic means results in decreased expression of AA transporters, depletion of intracellular AAs, and reduced growth of PCa cells in culture and mouse xenograft models. Although loss of GCN2 results in a significant reduction in PCa cell growth, minimal cell death is observed. We hypothesize that loss of GCN2 in PCa cells results in vulnerabilities that can be exploited and targeted to induce cell death. To optimize GCN2-targeted therapies for PCa, we utilized a targeted CRISPR-interference (CRISPRi) screen in castration-resistant 22Rv1 cells with functional wild type (WT) GCN2 or those with it deleted (GCN2 KO). The CRISPRi screen was performed in cells grown in culture or grown as tumor xenografts in mice and featured a guide library targeting genes that encode druggable targets, including kinases, phosphatases, and metabolic enzymes. While reduced expression of 152 genes was synthetically lethal with loss of GCN2 in the in vitro screen, more genes (202) were synthetically lethal with loss of GCN2 in vivo. Of note, reduced expression of many metabolic enzymes was synthetically lethal with GCN2 ablation only in the in vivo screen, potentially due to the abundance of nutrients in standard culture media. A group of six metabolism-related genes, identified as hits in the in vivo screen and targets of FDA-approved drugs, were selected for follow-up studies. One of these metabolic enzymes was GART, a trifunctional enzyme that carries out 3 of the 10 enzymatic steps in de novo purine biosynthesis. Based on our findings showing that GCN2 maintains AA levels to support nucleotide pools in PCa cells, we initially focused on this critical enzyme. Inhibition of GART using antifolates, including the FDA-approved Pemetrexed, resulted in minimal cell death of parental and GCN2 KO PCa cells cultured in standard culture media. However, when cultured in reduced nutrient media that better mimicked reduced nutrient availability in vivo, GART inhibition resulted in selective death of GCN2 KO cells. Our CRISPRi screening strategy uncovers new vulnerabilities in GCN2-inhibited PCa cells and reveals a general strategy to identify actionable targets with the potential to combine with GCN2 inhibitors for the treatment of PCa. Citation Format: Noah R. Sommers, Ricardo A. Cordova, Angela J. Klunk, Ronald C. Wek, Kirk A. Staschke. Identifying synthetic lethalities in GCN2 KO tumors using an in vivo targeted CRISPRi screen [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 388.

Spatiotemporal variability and drivers of modeled primary production rates in the Northern Humboldt Current System

A coupled physical-biogeochemical model was employed to explore the spatiotemporal dynamics of primary production (PP) rates within the Northern Humboldt Current System (NHCS). The coastal zone spanning 250 km from the shore, from 3°to 18°S, stands out as a highly productive upwelling region, exhibiting an average surface PP value of 2.5 mol C m−3 yr−1. Correspondingly, the average vertically integrated PP within the euphotic layer amounts to 13 mol C m−2 yr−1. In this context, summer emerges as the peak of productivity, yielding 18 mol C m−2 yr−1, while winter signifies the period of least productivity, with 9 mol C m−2 yr−1. Our study revealed that surface PP variability is primarily driven by changes in surface chlorophyll and phytoplanktonic biomass (mainly diatoms), followed by changes in photosynthetically active radiation (PAR) levels. During summertime, these three drivers contribute to substantial positive anomalies in surface PP. However, the reduction in nutrient availability resulting from weakened upwelling-favorable winds has a slight negative impact on surface PP rates. Yet, this decline is offset by a positive thermal effect during the warmer season. In contrast, during the winter season, a significant decrease in surface chlorophyll concentrations due to a vertical redistribution into a deeper mixed layer significantly diminishes surface PP. Furthermore, the reduction in both PAR levels and biomass concentrations has a comparable effect, further contributing to the decrease in surface PP rates during wintertime. At a depth of 20 m, changes in PP are primarily driven by variations between the opposing influences of PAR and chlorophyll concentrations. While PAR adheres to the seasonal cycle of warming and cooling throughout the year, chlorophyll-driven anomalies exhibit an inverse pattern to those at the surface, influenced by the vertical dilution effect within the mixed layer. Overall, this study provides valuable insights into the complex interplay of drivers that govern PP dynamics across various depths within one of the world’s most productive marine regions.

Convergently evolved placental villi show multiscale structural adaptations to differential placental invasiveness.

Despite having a single evolutionary origin and conserved function, the mammalian placenta exhibits radical structural diversity. The evolutionary drivers and functional consequences of placental structural diversity are poorly understood. Humans and equids both display treelike placental villi, however these villi evolved independently and exhibit starkly different levels of invasiveness into maternal tissue (i.e. the number of maternal tissue layers between placental tissue and maternal blood). The villi in these species therefore serve as a compelling evolutionary case study to explore whether placentas have developed structural adaptations to respond to the challenge of reduced nutrient availability in less invasive placentas. Here, we use three-dimensional X-ray microfocus computed tomography and electron microscopy to quantitatively evaluate key structures involved in exchange in human and equid placental villi. We find that equid villi have a higher surface area to volume ratio and deeper trophoblastic vessel indentation than human villi. Using illustrative computational models, we propose that these structural adaptations have evolved in equids to boost nutrient transfer to compensate for reduced invasiveness into maternal tissue. We discuss these findings in relation to the 'maternal-fetal conflict hypothesis' of placental evolution.

An isotope study on nitrogen and phosphorus use efficiency and movement in soil in a mimicked vermicompost‐based organo‐mineral fertilizer

AbstractVermicompost (VC), a stabilized organic material with high organic and humic carbon, and favorable aggregation properties, was tested as a fraction of organo‐mineral fertilizers (OMFs), where organic and mineral fractions interact in hotspot areas with surrounding soil. Solutions containing 33P radioisotope and 15N‐labeled mineral fertilizers were combined with VC at two ratios of organic carbon (Corg) to mineral nitrogen (N) and phosphorus (P) (OMF7.5C and OMF15C) to simulate OMF granules. Control treatments included unfertilized soil (N0P0), mineral fertilizer (MFNP), and sole VC at two rates (OF7.5C and OF15C). Nitrogen and P uptake by Italian ryegrass (Lolium multiflorum) were measured over in 8 weeks. Furthermore, MFNP, OMF7.5C, and OMF15C treatments were incubated for 10 days without plant to measure atom% 15N excess and 33P radioactivity, as indicators of N and P movement from two soil layers (surrounding fertilizer hotspot and below it). In the pot study, OMF15C caused 24% lower biomass and less nutrient recovery derived from fertilizer (N, 11% and P, 8.5%), compared to MFNP. In the incubation study, OMF15C exhibited +19% atom% 15N excess in the combined two soil layers, relative to MFNP, and +28% 33P radioactivity in the soil surrounding the hotspot, and −89% in the soil below it. We interpreted this as a reduction in nutrient availability of the combined VC + mineral fertilizers, due to lower P mobility in soil. The combination of VC with mineral fertilizers can reduce P movement in soil. A higher Corg:N:P ratio resulted in lower nutrient use efficiency in 2 months.

A comparative study of soil fertility and biota population under organic, semi-organic, and conventional farming system of rice fields in Giriwoyo District, Wonogiri Regency, Indonesia

Continuous use of chemical fertilizers and farming practices in rice fields would reduce nutrient availability and biota population in the soil. Because soil biological linkages are sensitive to changes in soil function, changes in fauna and microbial populations can affect soil fertility. This study aimed to identify the condition of soil fertility and soil biota under various farming systems, namely organic, semi-organic, and conventional, and find the indicators that determine soil fertility index (SFI) in the research area. This research is a survey with the sampling method was purposive on the Land Mapping Unit (LMU) overlaid with thematic maps (land use, soil type, slope, and rainfall). The method analysis of SFI using Principal Component Analysis (PCA) and scoring methods were used for the effect of farming systems using One-way, continued by DMRT, and determinant factor using Pearson’s. Correlation. The results illustrated that soil fertility was a moderate category. The highest SFI was in organic rice fields (0.69), then in semi-organic (0.62), and the lowest fertility was in conventional (0.59). Organic farming also showed the best soil biota conditions (0.27 individuals/liter of earthworms and 0.755 µ/g of microbial C biomass) compared to semi-organic (0.15 individuals/liter, 0.508 µ/g microbial C biomass) and conventional farming (0.11 individuals/liter, microbial biomass C 0.325 µ/g). Soil fertility and soil biota are positively correlated, meaning that the higher the soil fertility, the higher the density of soil biota. The soil indicators most determining fertility are total N, P-available, K-available, CEC, and organic C.

Impact of Phytoplankton Community Structure Changes in the South Sea of Korea on Marine Ecosystems Due to Climate Change

Herein, we conducted surveys during the 2018–2022 summers to investigate the impact of climate change-related changes in the phytoplankton community structure on the marine ecosystem in the South Sea of Korea. The average surface water temperature increased by ~1.07 °C at 0.0195 °C·yr−1 between 1968 and 2022. During the summers, the rate was 0.0211 °C·yr−1, with a total increase of ~1.16 °C, indicating a stronger increase in summer surface water temperature. Over the last 30 years, nutrient levels in the South Sea have decreased, particularly at the surface. Moreover, 29.3–90.0% of the phytoplankton community structure was dominated by nanoflagellates (≤20 μm). Based on the size of the phytoplankton chl-a, the average contribution rate of picophytoplankton was the highest (60.1%). Redundancy analysis revealed negative correlations between nutrients and water depth, excluding NH4. Increased stratification due to climate change is causing reduced nutrient availability at the surface mixed layer, and the size of the phytoplankton structure is progressively reducing. These changes are expected to manifest in a complex microbial food web centered on smaller phytoplankton with low primary productivity. This can reduce the efficiency of carbon transfer to higher consumer levels, suggesting a potential decrease in marine productivity.

Phosphate Limitation Responses in Marine Green Algae Are Linked to Reprogramming of the tRNA Epitranscriptome and Codon Usage Bias.

Marine algae are central to global carbon fixation, and their productivity is dictated largely by resource availability. Reduced nutrient availability is predicted for vast oceanic regions as an outcome of climate change; however, there is much to learn regarding response mechanisms of the tiny picoplankton that thrive in these environments, especially eukaryotic phytoplankton. Here, we investigate responses of the picoeukaryote Micromonas commoda, a green alga found throughout subtropical and tropical oceans. Under shifting phosphate availability scenarios, transcriptomic analyses revealed altered expression of transfer RNA modification enzymes and biased codon usage of transcripts more abundant during phosphate-limiting versus phosphate-replete conditions, consistent with the role of transfer RNA modifications in regulating codon recognition. To associate the observed shift in the expression of the transfer RNA modification enzyme complement with the transfer RNAs encoded by M. commoda, we also determined the transfer RNA repertoire of this alga revealing potential targets of the modification enzymes. Codon usage bias was particularly pronounced in transcripts encoding proteins with direct roles in managing phosphate limitation and photosystem-associated proteins that have ill-characterized putative functions in "light stress." The observed codon usage bias corresponds to a proposed stress response mechanism in which the interplay between stress-induced changes in transfer RNA modifications and skewed codon usage in certain essential response genes drives preferential translation of the encoded proteins. Collectively, we expose a potential underlying mechanism for achieving growth under enhanced nutrient limitation that extends beyond the catalog of up- or downregulated protein-encoding genes to the cell biological controls that underpin acclimation to changing environmental conditions.

Identification of potential biomarkers in malnutrition children with severity by 1H-NMR-based metabolomics: a preliminary study in the Chinese population.

Child malnutrition is a global public health problem, but the underlying pathophysiologic mechanisms with severity remain poorly understood, and the potential biomarkers served to the clinical diagnosis are still not available. This study aimed to identify the serum metabolic characteristics of malnourished children with severity. Fasted overnight serum samples were collected following clinical standard procedures among275 malnourished and 199 healthy children from the Women and Children's Hospital, Xiamen University Child Health Department from July 2020 to May 2022. Nuclear magnetic resonance (NMR)-based metabolomics strategy was applied to identify the potential serum biomarkers of malnutrition from 275 malnourished children aged 4 to 84 months with mild (Mil, 199 cases), moderate (Mod, 101 cases), and severe (Sev, 7 cases) malnutrition. Ten, fifteen, and fifteen differential metabolites were identified from the Mil, Mod, and Sev malnutrition groups, respectively. Eight common metabolites, including increased acetoacetate, acetone, ethanol, succinate, 3-hydroxybutyrate, and decreased alanine, methionine, and N-acetyl-glycoprotein, could be the potential biomarkers for malnourished children. The altered metabolic pathways were mainly related to energy metabolism and amino acid metabolism via the network-based pathway enrichment. Eight potential biomarkers, including acetoacetate, acetone, ethanol, succinate, 3-hydroxybutyrate, alanine, methionine, and N-acetyl-glycoprotein, could characterize the child malnutrition. Child malnutrition-induced abnormal energy metabolism, impaired nutrition utilization and the reduced nutrient availability, and more metabolic disturbance will appear with the severity. Our results are valuable for further studies on the etiology and pathogenesis of malnutrition for clinical intervention and improvement.

Cellular Adaptation Takes Advantage of Atavistic Regression Programs during Carcinogenesis.

Adaptation of cancer cells to extreme microenvironmental conditions (i.e., hypoxia, high acidity, and reduced nutrient availability) contributes to cancer resilience. Furthermore, neoplastic transformation can be envisioned as an extreme adaptive response to tissue damage or chronic injury. The recent Systemic-Evolutionary Theory of the Origin of Cancer (SETOC) hypothesizes that cancer cells "revert" to "primitive" characteristics either ontogenically (embryo-like) or phylogenetically (single-celled organisms). This regression may confer robustness and maintain the disordered state of the tissue, which is a hallmark of malignancy. Changes in cancer cell metabolism during adaptation may also be the consequence of altered microenvironmental conditions, often resulting in a shift toward lactic acid fermentation. However, the mechanisms underlying the robust adaptive capacity of cancer cells remain largely unknown. In recent years, cancer cells' metabolic flexibility has received increasing attention among researchers. Here, we focus on how changes in the microenvironment can affect cancer cell energy production and drug sensitivity. Indeed, changes in the cellular microenvironment may lead to a "shift" toward "atavistic" biologic features, such as the switch from oxidative phosphorylation (OXPHOS) to lactic acid fermentation, which can also sustain drug resistance. Finally, we point out new integrative metabolism-based pharmacological approaches and potential biomarkers for early detection.

Organic acids to adjust pH of chicken manure extract for fertilization of potted coriander

Fertigation solutions with high pH are a challenge in organically certified greenhouse production. We investigated how organic and inorganic acids affected pH of a fertigation solution derived from certified organic chicken manure extract (CME) in a 23-day pot experiment with coriander (Coriandrum sativum L.). The pH was adjusted to 6.0 using four organic acids: apple vinegar (CAV), citric acid (CCA), redcurrant juice (CR) and lactic acid water (CAW); and using inorganic sulfuric acid to adjust pH to 6.0 (CIN6.0), 6.5 (CIN6.5) and 7.0 (CIN7.0). CME without pH adjustment (C) and an inorganic fertigation treatment with a pH of 6 (IN) served as controls. Nutrient status, pH and oxygen concentration of the growing medium, and biomass yield parameters of coriander were measured. The pH of CME fertigation solutions increased by 0.9–1.4 units within seven days. CME lowered concentrations of NO3, Ca, Mg and B, increased concentrations of NH4, P, K, Cl, Na and Fe, and electrical conductivity (EC) in the growing medium solutions compared to IN. Most macro- and micronutrients concentrations in shoots (except N, K and Mg) were higher when coriander was given CIN6.0 compared to CME with organic or no pH-adjustment. Oxygen concentration was lower in CME than IN treated pots at 7 cm depth. Organic acids failed to efficiently control the pH of CME fertigation solutions, reduced nutrient availability and resulted in lower root score and a 29–41% lower coriander biomass than IN. Despite inefficient pH control, organic acids did not reduce coriander biomass compared to inorganic acids.

Functional trait-based restoration alters nutrient cycling and invasion rates in Hawaiian lowland wet forest.

Many degraded ecosystems have altered nutrient dynamics due to invaders' possessing a suite of traits that allow them to both outcompete native species and alter the environment. In ecosystems where invasive species have increased nutrient turnover rates, it can be difficult to reduce nutrient availability. This study examined whether a functional trait-based restoration approach involving the planting of species with conservative nutrient-use traits could slow rates of nutrient cycling and consequently reduce rates of invasion. We examined a functional trait restoration initiative in a heavily invaded lowland wet forest site in Hilo, Hawai'i. Native and introduced species were chosen to create four experimental hybrid forest communities, in comparison to the invaded forest, with a factorial design in which communities varied in rates of carbon turnover (slow or moderate [SLOW, MOD]), and in the relationship of species in trait space (redundant or complementary [RED, COMP]). After the first 5 years, we evaluated community-level outcomes related to nutrient cycling: carbon (C), nitrogen (N), and phosphorus (P) via litterfall, litter decomposition, and outplant productivity and rates of invasion. We found that (1) regardless of treatment, the experimental communities had low rates of nutrient cycling through litterfall relative to the invaded reference forest, (2) the MOD communities had greater nutrient release via litterfall than the SLOW communities, (3) introduced species had greater nutrient release than native species in the two MOD experimental communities, and (4) within treatments, there was a positive relationship between nutrient levels and outplant basal area, but outplant basal area was negatively associated with rates of invasion. The negative relationships among basal area and weed invasion, particularly for the two COMP treatments, suggest species existing in different parts of trait space may help confer some degree of invasion resistance. The diversification of trait space was facilitated by the use of introduced species, a new concept in Hawaiian forest management. Although challenges remain in endeavors to restore this heavily degraded ecosystem, this study provides evidence that functional trait-based restoration approaches using carefully crafted hybrid communities can reduce rates of nutrient cycling and invasion in order to reach management goals.

Simulated upwelling and marine heatwave events promote similar growth rates but differential domoic acid toxicity in Pseudo-nitzschia australis

Along the west coast of the United States, highly toxic Pseudo-nitzschia blooms have been associated with two contrasting regional phenomena: seasonal upwelling and marine heatwaves. While upwelling delivers cool water rich in pCO2 and an abundance of macronutrients to the upper water column, marine heatwaves instead lead to warmer surface waters, low pCO2, and reduced nutrient availability. Understanding Pseudo-nitzschia dynamics under these two conditions is important for bloom forecasting and coastal management, yet the mechanisms driving toxic bloom formation during contrasting upwelling vs. heatwave conditions remain poorly understood. To gain a better understanding of what drives Pseudo-nitzschia australis growth and toxicity during these events, multiple-driver scenario or ‘cluster’ experiments were conducted using temperature, pCO2, and nutrient levels reflecting conditions during upwelling (13 °C, 900 ppm pCO2, replete nutrients) and two intensities of marine heatwaves (19 °C or 20.5 °C, 250 ppm pCO2, reduced macronutrients). While P. australis grew equally well under both heatwave and upwelling conditions, similar to what has been observed in the natural environment, cells were only toxic in the upwelling treatment. We also conducted single-driver experiments to gain a mechanistic understanding of which drivers most impact P. australis growth and toxicity. These experiments indicated that nitrogen concentration and N:P ratio were likely the drivers that most influenced domoic acid production, while the impacts of temperature or pCO2 concentration were less pronounced. Together, these experiments may help to provide both mechanistic and holistic perspectives on toxic P. australis blooms in the dynamic and changing coastal ocean, where cells interact simultaneously with multiple altered environmental variables.

Shedding light on starvation in darkness in the plastid-bearing sea slug Elysia viridis (Montagu, 1804)

Sacoglossa are known for stealing photosynthetically active chloroplasts from their macroalgal food and incorporating them into their cytosol. The nutritional support these alien organelles (kleptoplasts) provide to the slugs is still debatable. Comparing slugs starved in continuous darkness (non-photosynthetic condition) and light (photosynthetic condition) is often used to understand the contribution of the kleptoplasts to the slugs' metabolism. Here, we examined the slugs' side of starvation in darkness to better understand the effects of darkness on the slugs. We compared the gene expression profile and digestive activity of Elysia viridis, starved for one week under ambient light and continuous darkness. Starvation in darkness led to the up-regulation of genes related to glucose deficiency, while genes involved in the development, cellular organization, and reproduction were down-regulated. This specific gene expression may counteract reduced nutrient availability under non-photosynthetic conditions. Under photosynthetic conditions, kleptoplasts may have a higher nutritional value and may be able to support some metabolic processes. It appears that the slugs can only access kleptoplast photosynthates through autophagy during starvation. Nevertheless, autophagy and length reduction in darkness are highly elevated compared to light conditions, suggesting that more slug tissue is needed to satisfy the nutritional demands under non-photosynthetic conditions. Since we did not detect a gene expression related to the export of photosynthates to the slugs, our results support the hypothesis that slugs use kleptoplasts as larders accessible via autophagy. As long as the kleptoplasts are functional, they provide an energetic support, helping the slugs to reduce starvation-induced stress.

Influence of Processed Cassava Peel-leaf Blend as Replacement for Maize on Growth Performance and Serum Parameters of Growing Pigs

Background: The use of alternative feedstuff like cassava peel and leaf in pig production is of great concern due to reduced nutrient availability caused by high fibre and antinutritional constituent. The current study investigated the effect of dietary inclusion of differently processed cassava peel-leaf blend (CPLB) on growth and blood parameters of growing pigs. Methods: CPLB (Cassava peel: Cassava leaf; 5:1) was included in pigs diet in a feeding trial for 16 wks. The CPLB replaced maize at 100%. 24 pigs of mean weight range (20-22 kg) were assigned on a weight equalization basis to four dietary treatments having six replicates with one pig per replicate. A standard corn soya-based diet (control), Unfermented CPLB (UCPLB), water fermented CPLB (WCPLB) and microbial fermented CPLB (MCPLB) using Aspergillus tamarii as inoculum was formulated. Growth response was measured and serum analysis was carried out at the end of the 8th and 16th week. Result: There was no significant (p greater than 0.05) effect on growth performance at the end of the 8th and 16th weeks. Dietary inclusion of MCPLB resulted in higher (p less than 0.05) cholesterol (144.30 mmol/L) in pigs than those fed control diet (97.20 mm/L) at the end of 8th week. Pigs fed diet containing UCPLB had reduced (p less than 0.05) serum creatinine (0.58 mg/dl) at the end of 16th week. In conclusion, CPLB based diet irrespective of processing method did not significantly affect growth performance and without negative effect on blood serum parameters.

Soil microbial communities are sensitive to differences in fertilization intensity in organic and conventional farming systems.

Intensive agriculture has increased global food production, but also impaired ecosystem services and soil biodiversity. Organic fertilization, essential to organic and integrated farming, can provide numerous benefits for soil quality but also compromise the environment by polluting soils and producing greenhouse gases through animal husbandry. The need for reduced stocking density is inevitably accompanied by lower FYM inputs, but little research is available on the impact of these effects on the soil microbiome. We collected soil samples from winter wheat plots of a 42-year-old long-term trial comparing different farming systems receiving farmyard manure at two intensities and measured soil quality parameters and microbial community diversity through DNA metabarcoding. High-input fertilization, corresponding to 1.4 livestock units (LU) improved the soil's nutritional status and increased soil microbial biomass and respiration when compared to low-input at 0.7 LU. Bacterial and fungal α-diversity was largely unaffected by fertilization intensity, whereas their community structure changed consistently, accompanied by an increase in the bacterial copiotroph-to-oligotroph ratio in high-input systems and by more copiotrophic indicator OTUs associated with high than low-input. This study shows that reduced nutrient availability under low-input selects oligotrophic microbes efficiently obtaining nutrients from various carbon sources; a potentially beneficial trait considering future agroecosystems.

Low-nutrient diet in Drosophila larvae stage causes enhancement in dopamine modulation in adult brain due epigenetic imprinting.

Nutrient scarcity is a frequent adverse condition that organisms face during their development. This condition may lead to long-lasting effects on the metabolism and behaviour of adults due to developmental epigenetic modifications. Here, we show that reducing nutrient availability during larval development affects adult spontaneous activity and sleep behaviour, together with changes in gene expression and epigenetic marks in the mushroom bodies (MBs). We found that open chromatin regions map to 100 of 241 transcriptionally upregulated genes in the adult MBs, these new opening zones are preferentially located in regulatory zones such as promoter-TSS and introns. Importantly, opened chromatin at the Dopamine 1-like receptor 2 regulatory zones correlate with increased expression. In consequence, adult administration of a dopamine antagonist reverses increased spontaneous activity and diminished sleep time observed in response to early-life nutrient restriction. In comparison, reducing dop1R2 expression in MBs also ameliorates these effects, albeit to a lesser degree. These results lead to the conclusion that increased dopamine signalling in the MBs of flies reared in a poor nutritional environment underlies the behavioural changes observed due to this condition during development.

Nutrient availability regulates Deschampsia antarctica photosynthetic and stress tolerance performance in Antarctica.

Deschampsia antarctica is one of the only two native vascular plants in Antarctica, mostly located in the ice-free areas of the Peninsula's coast and adjacent islands. This region is characterized by a short growing season, frequent extreme climatic events, and soils with reduced nutrient availability. However, it is unknown whether its photosynthetic and stress tolerance mechanisms are affected by the availability of nutrients to deal with this particular environment. We studied the photosynthetic, primary metabolic, and stress tolerance performance of D. antarctica plants growing on three close sites (<500 m) with contrasting soil nutrient conditions. Plants from all sites showed similar photosynthetic rates, but mesophyll conductance and photobiochemistry were more limiting (~25%) in plants growing on low-nutrient availability soils. Additionally, these plants showed higher stress levels and larger investments in photoprotection and carbon pools, most probably driven by the need to stabilize proteins and membranes, and remodel cell walls. In contrast, when nutrients were readily available, plants shifted their carbon investment towards amino acids related to osmoprotection, growth, antioxidants, and polyamines, leading to vigorous plants without appreciable levels of stress. Taken together, these findings demonstrate that D. antarctica displays differential physiological performances to cope with adverse conditions depending on resource availability, allowing it to maximize stress tolerance without jeopardizing photosynthetic capacity.

Photoinhibition and Photoprotective Responses of a Brown Marine Macroalga Acclimated to Different Light and Nutrient Regimes.

Plants and brown algae avoid photoinhibition (decline in photosystem II efficiency, Fv/Fm) caused by excess light energy and oxidative stress through several photoprotective mechanisms, such as antioxidant xanthophyll production and heat dissipation. The heat dissipation can be measured as non-photochemical quenching (NPQ) and is strongly driven by de-epoxidation of xanthophyll cycle pigments (XCP). Although NPQ is known to increase under high light acclimation and nutrient-deficient conditions, a few studies have investigated the combined effects of the conditions on both NPQ and associated xanthophyll-to-chlorophyll (Chl) a ratio. The present study investigated the photosynthetic parameters of the brown alga Sargassum fusiforme acclimated to three irradiance levels combined with three nutrient levels. Elevated irradiance decreased Fv/Fm but increased NPQ, XCP/Chl a ratio, and fucoxanthin/Chl a ratio, suggesting the photoprotective role of antioxidant fucoxanthin in brown algae. Reduced nutrient availability increased NPQ but had no effect on the other variables, including XCP/Chl a ratio and its de-epoxidation state. The results indicate that NPQ can be used as a sensitive stress marker for nutrient deficiency, but cannot be used to estimate XCP pool size and state.

Differences in daily milk production during early pregnancy alter placental characteristics and neonatal metabolic amino acid levels in dairy cows.

We investigated the effects of differences in milk production during early pregnancy on placental characteristics at full term, calf birth weights, and their metabolic status. Thirty-four Holstein cows were categorized into three groups (Low, n = 9; Middle, n = 16; High, n = 9) based on the quartile of average daily 4% fat-corrected milk production during early pregnancy. The High group showed higher milk component production than the other groups (P < 0.05) during early and mid-pregnancy. Although most placental characteristics did not differ significantly among the groups, cows in the High group had larger individual cotyledons and fewer medium-sized cotyledons than those in the Low group (P < 0.05). Plasma amino acid concentrations of calves in the Low and High groups were significantly higher than those of calves in the Middle group, although calf birth weights were similar among the groups. Furthermore, cows in the Low group had longer dry periods than those in the High (P = 0.004) and Middle (P = 0.058) groups. This suggests that cows in the Low group may have provided more amino acids to the fetus because of low lactation and long dry periods. Conversely, cows in the High group required more energy for lactation during early pregnancy, which can reduce nutrient availability to the placenta and fetus; however, increasing individual cotyledonary sizes during late pregnancy may ensure that the same amounts of amino acids as those in cows in the Low group are supplied to the fetus, recovering the birth weights.