Exploring highly active and noble metal-free photocatalysts for the efficient photocatalytic degradation of antibiotics is of great significance. The CuFe2O4 nanostructured cube is synthesized by using a self-sacrificial template strategy, and two-dimensional Bi2MoO6 nanosheets are grown on the surface of CuFe2O4 through a solvothermal method to construct CuFe2O4/Bi2MoO6 S-scheme heterostructure. The CuFe2O4/Bi2MoO6 composite material exhibits eminent photocatalytic activity for the degradation of TC under simulated sunlight, with the optimal ratio CFO/BMO-2 achieving a degradation rate of 98.54 % within 30 min (initial concentration of TC: 50 mg L−1). In addition, CFO/BMO-2 also has excellent magnetic recyclability and cycling ability. Rice cultivation tests demonstrate that the biotoxicity of TC is effectively removed. Density functional theory calculations and in-situ irradiated X-ray spectroscopy deeply reveal the mechanisms of charge separation and transfer of S-scheme heterojunctions in CuFe2O4/Bi2MoO6. The construction of S-scheme heterojunctions promotes the separation of photo-induced charge carriers and improves photocatalytic degradation performance by retaining holes and electrons with strong redox ability. The work provides a practicable method for constructing efficient spinel photocatalysts to drive wastewater treatment reactions, and the constructed magnetically recyclable photocatalysts have certain practical application potential.