In this study, we propose a new method that uses the recursive fitting method and wall function for the three-dimensional turbulent flow simulation. The recursive fitting method based on the Cartesian grid method is employed for the automatic generation around two- and three-dimensional geometries. The grid approximately represents the concave and convex features, i.e., a wing–fuselage juncture and wing trailing edges. The wall boundary conditions can be imposed on the wall faces; thus, the conservation laws are strictly satisfied. Meanwhile, using the wall function allows turbulent boundary layers to be accurately reproduced. The turbulent flow simulation using the wall function is straightforward because the flow variables at the first cell centroid are employed for friction velocity estimation. However, the distance between the body surface and the first cell centroid varies since cells with different shapes are generated. Therefore, the simulation using the proposed method is validated through turbulent flow simulations in two dimensions. The results show the accurate predictions of the turbulent boundary layers. To investigate the capacity of the proposed method, three-dimensional simulation around aircraft at a transonic cruise condition is conducted. The automatically generated grids by the proposed method approximately represent the geometric features. The results of flow simulation show that the surface pressure and skin friction coefficient distributions agree with those of the reference simulation on a conventional body-fitted grid. Further, predicted pressure and viscous drag coefficients are reasonable compared with those of the reference simulation.