Recall Curve Research Articles

MIPPIS: protein–protein interaction site prediction network with multi-information fusion

BackgroundThe prediction of protein–protein interaction sites plays a crucial role in biochemical processes. Investigating the interaction between viruses and receptor proteins through biological techniques aids in understanding disease mechanisms and guides the development of corresponding drugs. While various methods have been proposed in the past, they often suffer from drawbacks such as long processing times, high costs, and low accuracy.ResultsAddressing these challenges, we propose a novel protein–protein interaction site prediction network based on multi-information fusion. In our approach, the initial amino acid features are depicted by the position-specific scoring matrix, hidden Markov model, dictionary of protein secondary structure, and one-hot encoding. Simultaneously, we adopt a multi-channel approach to extract deep-level amino acids features from different perspectives. The graph convolutional network channel effectively extracts spatial structural information. The bidirectional long short-term memory channel treats the amino acid sequence as natural language, capturing the protein’s primary structure information. The ProtT5 protein large language model channel outputs a more comprehensive amino acid embedding representation, providing a robust complement to the two aforementioned channels. Finally, the obtained amino acid features are fed into the prediction layer for the final prediction.ConclusionCompared with six protein structure-based methods and six protein sequence-based methods, our model achieves optimal performance across evaluation metrics, including accuracy, precision, F1, Matthews correlation coefficient, and area under the precision recall curve, which demonstrates the superiority of our model.

High-Precision Defect Detection in Solar Cells Using YOLOv10 Deep Learning Model

This study presents an advanced defect detection approach for solar cells using the YOLOv10 deep learning model. Leveraging a comprehensive dataset of 10,500 solar cell images annotated with 12 distinct defect types, our model integrates Compact Inverted Blocks (CIBs) and Partial Self-Attention (PSA) modules to enhance feature extraction and classification accuracy. Training on the Viking cluster with state-of-the-art GPUs, our model achieved remarkable results, including a mean Average Precision (mAP@0.5) of 98.5%. Detailed analysis of the model’s performance revealed exceptional precision and recall rates for most defect classes, notably achieving 100% accuracy in detecting black core, corner, fragment, scratch, and short circuit defects. Even for challenging defect types such as a thick line and star crack, the model maintained high performance, with accuracies of 94% and 96%, respectively. The Recall–Confidence and Precision–Recall curves further demonstrate the model’s robustness and reliability across varying confidence thresholds. This research not only advances the state of automated defect detection in photovoltaic manufacturing but also underscores the potential of YOLOv10 for real-time applications. Our findings suggest significant implications for improving the quality control process in solar cell production. Although the model demonstrates high accuracy across most defect types, certain subtle defects, such as thick lines and star cracks, remain challenging, indicating potential areas for further optimization in future work.

Targeting COVID-19 and Human Resources for Health News Information Extraction: Algorithm Development and Validation.

Global pandemics like COVID-19 put a high amount of strain on health care systems and health workers worldwide. These crises generate a vast amount of news information published online across the globe. This extensive corpus of articles has the potential to provide valuable insights into the nature of ongoing events and guide interventions and policies. However, the sheer volume of information is beyond the capacity of human experts to process and analyze effectively. The aim of this study was to explore how natural language processing (NLP) can be leveraged to build a system that allows for quick analysis of a high volume of news articles. Along with this, the objective was to create a workflow comprising human-computer symbiosis to derive valuable insights to support health workforce strategic policy dialogue, advocacy, and decision-making. We conducted a review of open-source news coverage from January 2020 to June 2022 on COVID-19 and its impacts on the health workforce from the World Health Organization (WHO) Epidemic Intelligence from Open Sources (EIOS) by synergizing NLP models, including classification and extractive summarization, and human-generated analyses. Our DeepCovid system was trained on 2.8 million news articles in English from more than 3000 internet sources across hundreds of jurisdictions. Rules-based classification with hand-designed rules narrowed the data set to 8508 articles with high relevancy confirmed in the human-led evaluation. DeepCovid's automated information targeting component reached a very strong binary classification performance of 98.98 for the area under the receiver operating characteristic curve (ROC-AUC) and 47.21 for the area under the precision recall curve (PR-AUC). Its information extraction component attained good performance in automatic extractive summarization with a mean Recall-Oriented Understudy for Gisting Evaluation (ROUGE) score of 47.76. DeepCovid's final summaries were used by human experts to write reports on the COVID-19 pandemic. It is feasible to synergize high-performing NLP models and human-generated analyses to benefit open-source health workforce intelligence. The DeepCovid approach can contribute to an agile and timely global view, providing complementary information to scientific literature.

Machine learning approach for detection of valvular heart disease through digital cardiac auscultation: results from multi-center prospective cross-sectional study

Abstract Background Cardiac auscultation, an essential bedside diagnostic tool, often identifies significant valvular heart disease through murmurs. However, its accuracy is contingent upon the clinician's expertise, leading to a growing dependence on expensive imaging techniques. This study aimed to develop and validate a machine learning model for detecting valvular heart disease from cardiac auscultation. Methods The digital cardiac auscultation and associated echocardiograms were prospectively collected from three sites between May 1, 2022, and Dec 31, 2022. We trained, validated, and externally tested a machine learning based model to classify aortic stenosis, mitral stenosis, aortic regurgitation, mitral regurgitation, tricuspid regurgitation, oveall valvular heart disease from cardiac auscultation, age, sex, and comorbidity. We condcted training, and internal testing using datasets for eXtreme Gradient Boosting (XGBoost) machine learning model from hospital one and hospital two. The dataset from hospital three was employed for external testing. We evaluated the area under the receiver operating characteristic curve (AUROC), area under the precision recall curve (AUPRC), accuracy, sensitivity, specificity. Result We selected the cardiac auscultation and echocardiograms of a total of 4,321 patients, excluding those without valvular heart disease information, congenital heart disease, a history of valvular operation, and cardiac auscultation could not be interpreted. The diagnostic performance of heart murmurs for valvular heart disease across the three datasets generally demonstrated high sensitivity and PPV. Specifically, the sensitivity for aortic stenosis was 89.1%, mitral stenosis 88.8%, aortic regurgitation 88.5%, mitral regurgitation 89.8%, tricuspid regurgitation 90.1%, and for any valvular heart disease, it was 95.0%. However, the NPV was consistently lower, with values of 16.4%, 14.2%, 12.2%, 23.1%, 26.2%, and 65.3% for the respective conditions. In XGBoost machine learning model, the AUROC values for internal testing (N=1,403), along with their 95% confidence intervals, were as follows: aortic stenosis (0.93, 0.88–0.97), mitral stenosis (0.91, 0.81–0.97), aortic regurgitation (0.84, 0.79–0.90), mitral regurgitation (0.94, 0.90–0.98), tricuspid regurgitation (0.81, 0.75–0.87), and overall valvular heart disease (0.86, 0.82–0.89). For external testing (N=814), the AUROC values were: aortic stenosis (0.90, 0.83–0.96), mitral stenosis (0.88, 0.79–0.95), aortic regurgitation (0.94, 0.93–0.96), mitral regurgitation (0.93, 0.92–0.95), tricuspid regurgitation (0.89, 0.87–0.91), and overall valvular heart disease (0.92, 0.90–0.94). Conclusion The machine learning based model can accurately classify valvular heart diseases using information from digital cardiac auscultation.Figure 1.Study FlowFigure 2.AUC curve

An Investigation into the Susceptibility to Landslides Using Integrated Learning and Bayesian Optimization: A Case Study of Xichang City

In the middle southern section of the Freshwater River–Small River Fault system, Xichang City, Daliang Prefecture, Sichuan Province, is situated in the junction between the Anning River Fault and the Zemu River Fault. There has been a risk of increased activity in the fault zone in recent years, and landslide susceptibility evaluation for the area can effectively reduce the risk of disaster occurrence. Using integrated learning and Bayesian hyperparameter optimization, 265 landslides in Xichang City were used as samples in this study. Thirteen influencing factors were chosen to assess landslide susceptibility, and the BO-XGBoost, BO-LightGBM, and BO-RF models were evaluated using precision, recall, F1, accuracy, and AUC curves. The findings indicated that after removing the terrain relief evaluation factor, the four most significant factors associated with landslide susceptibility were NDVI, distance from faults, slope, and distance from rivers. The study demonstrates that the AUC value of the BO-XGBoost model in the study area is 0.8677, demonstrating a better generalization ability and higher prediction accuracy than the BO-LightGBM and BO-RF models. After Bayesian optimization of hyperparameters, the model offers a significant improvement in prediction accuracy.

An effective method for anomaly detection in industrial Internet of Things using XGBoost and LSTM

In recent years, with the application of Internet of Things (IoT) and cloud technology in smart industrialization, Industrial Internet of Things (IIoT) has become an emerging hot topic. The increasing amount of data and device numbers in IIoT poses significant challenges to its security issues, making anomaly detection particularly important. Existing methods for anomaly detection in the IIoT often fall short when dealing with data imbalance, and the huge amount of IIoT data makes feature selection challenging and computationally intensive. In this paper, we propose an optimal deep learning model for anomaly detection in IIoT. Firstly, by setting different thresholds of eXtreme Gradient Boosting (XGBoost) for feature selection, features with importance above the given threshold are retained, while those below are ignored. Different thresholds yield different numbers of features. This approach not only secures effective features but also reduces the feature dimensionality, thereby decreasing the consumption of computational resources. Secondly, an optimized loss function is designed to study its impact on model performance in terms of handling imbalanced data, highly similar categories, and model training. We select the optimal threshold and loss function, which are part of our optimal model, by comparing metrics such as accuracy, precision, recall, False Alarm Rate (FAR), Area Under the Receiver Operating Characteristic Curve (AUC-ROC), and Area Under the Precision–Recall Curve (AUC-PR) values. Finally, combining the optimal threshold and loss function, we propose a model named MIX_LSTM for anomaly detection in IIoT. Experiments are conducted using the UNSW-NB15 and NSL-KDD datasets. The proposed MIX_LSTM model can achieve 0.084 FAR, 0.984 AUC-ROC, and 0.988 AUC-PR values in the binary anomaly detection experiment on the UNSW-NB15 dataset. In the NSL-KDD dataset, it can achieve 0.028 FAR, 0.967 AUC-ROC, and 0.962 AUC-PR values. By comparing the evaluation indicators, the model shows good performance in detecting abnormal attacks in the Industrial Internet of Things compared with traditional deep learning models, machine learning models and existing technologies.

Construction and validation of a histone-related gene signature for the diagnosis of endometriosis.

Endometriosis is a common chronic disease in childbearing women and a major cause of infertility. Our study aimed to identify and validate a novel gene signature for diagnosing endometriosis based on histone-related genes (HRGs), and to investigate their biological functions in endometriosis. RNA sequence data were downloaded from the Gene Expression Omnibus database, and HRGs were retrieved from the GeneCards database. We identified differentially expressed genes using the limma package, and constructed a diagnostic model using the rms package. Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) enrichment analyses were performed for visualization, annotation, and integrated discovery. Subsequently, we validated the model using the recall and decision curve analysis (DCA). Additionally, we analyzed the immune microenvironment features using CIBERSORT. A total of 18 differentially expressed HRGs were identified in patients with endometriosis compared with controls. GO and KEGG enrichment was mainly in spindle organization, positive regulation of the cell cycle process, progesterone-mediated oocyte maturation, and cellular senescence and cell cycle. We obtained a signature of four HRGs (JUNB, FRY, LMNB1, and SPAG1). DCA revealed that the diagnostic model benefits patients with endometriosis, regardless of the incidence. CIBERSORT analysis showed that the number of plasma cells increased significantly in endometriosis samples from all four datasets. Our findings provide novel insights into the function of HRGs in the development of endometriosis and identify a new signature of four HRGs that may serve as valuable diagnostic markers and therapeutic targets for this disease.

Risk for Suicide Attempts Assessed Using the Patient Health Questionnaire–9 Modified for Teens

Suicide is a leading cause of death in US youths. To assess whether screening with supplemental items 10 to 13 on the Patient Health Questionnaire-9 modified for teens (PHQ-9M) improves prediction of youth suicide attempts beyond the information provided by the first 9 items alone (the PHQ-9). This retrospective cohort study used a retrospective cohort of adolescents aged 12 to 17 years who were screened for depression in outpatient facilities within a pediatric health care system between January 1, 2016, and December 31, 2022, with up to 1 year of follow-up to assess the occurrence of suicidal behavior. Follow-up was completed on December 31, 2023. Screening with the PHQ-9M. This study developed and compared prediction using 3 Cox proportional hazards regression models (CR-9, CR-13, and CR-3) of subsequent suicide attempts, determined by the hospital's electronic health records up to 1 year following the last PHQ-9M screening. The CR-9 model used the PHQ-9 and the CR-13 model used all 13 items of PHQ-9M. The CR-3 model used the 3 most impactful variables selected from the 13 PHQ-9M items and PHQ-9 total score. All models were evaluated across 4 prediction horizons (30, 90, 180, and 365 days) following PHQ-9M screenings. Evaluation metrics were the area under the receiver operating characteristic curve (AUROC) and the area under the precision recall curve (AUPRC). Of 130 028 outpatients (65 520 [50.4%] male) with 272 402 PHQ-9M screenings, 549 (0.4%) had subsequent suicide attempts within 1 year following the PHQ-9M screening. The AUROC of the CR-9 model in the 365-day horizon was 0.77 (95% CI, 0.75-0.79); of the CR-13 model, 0.80 (95% CI, 0.78-0.82); and of the CR-3 model, 0.79 (95% CI, 0.76-0.81); the AUPRC of the CR-9 model was 0.02 (95% CI, 0.02-0.03); of the CR-13 model, 0.03 (95% CI, 0.02-0.03); and of the CR-3 model, 0.02 (95% CI, 0.02-0.03). The 3 most impactful items using adjusted hazard ratios were supplemental item 13 (lifetime suicide attempts; 3.06 [95% CI, 2.47-3.80]), supplemental item 10 (depressed mood severity in the past year; 2.99 [95% CI, 2.32-3.86]), and supplemental item 12 (serious suicidal ideation in the past month; 1.63 [95% CI, 1.25-2.12]). All of the models achieved higher AUROCs as prediction horizons shortened. In this cohort study of adolescent PHQ-9M screenings, the supplemental items on PHQ-9M screening improved prediction of youth suicide attempts compared with screening using the PHQ-9 across all prediction horizons, suggesting that PHQ-9M screening should be considered during outpatient visits to improve prediction of suicide attempts.

Aberration Modulation Correlation Method for Dim and Small Space Target Detection

The significance of detecting faint and diminutive space targets cannot be overstated, as it underpins the preservation of Earth’s orbital environment’s safety and long-term sustainability. Founded by the different response characteristics between targets and backgrounds to aberrations, this paper proposes a novel aberration modulation correlation method (AMCM) for dim and small space target detection. By meticulously manipulating the light path using a wavefront corrector via a modulation signal, the target brightness will fluctuate periodically, while the background brightness remains essentially constant. Benefited by the strong correlation between targets’ characteristic changes and the modulation signal, dim and small targets can be effectively detected. Rigorous simulations and practical experiments have validated the remarkable efficacy of AMCM. Compared to conventional algorithms, AMCM boasts a substantial enhancement in the signal-to-noise ratio (SNR) detection limit from 5 to approximately 2, with an area under the precision–recall curve of 0.9396, underscoring its ability to accurately identify targets while minimizing false positives. In essence, AMCM offers an effective method for detecting dim and small space targets and is also conveniently integrated into other passive target detection systems.

Combined Method Comprising Low Burden Physiological Measurements with Dry Electrodes and Machine Learning for Classification of Visually Induced Motion Sickness in Remote-Controlled Excavator

The construction industry is actively developing remote-controlled excavators to address labor shortages and improve work safety. However, visually induced motion sickness (VIMS) remains a concern in the remote operation of construction machinery. To predict the occurrence and severity of VIMS, we developed a prototype system that acquires multiple physiological signals with different mechanisms under a low burden and detects VIMS from the collected data. Signals during VIMS were recorded from nine healthy adult males operating excavator simulators equipped with multiple displays and a head-mounted display. Light gradient-boosting machine-based VIMS detection binary classification models were constructed using approximately 30,000 s of time-series data, comprising 23 features derived from the physiological signals. These models were validated using leave-one-out cross-validation on seven participants who experienced severe VIMS and evaluated through area under the curve (AUC) scores. The mean receiver operating characteristic curve AUC score was 0.84, and the mean precision–recall curve AUC score was 0.71. All features were incorporated into the models, with saccade frequency and skin conductance response identified as particularly important. These trends aligned with subjective assessments of VIMS severity. This study contributes to advancing the use of remote-controlled machinery by addressing a critical challenge to operator performance and safety.

Automated Identification of HeartFailureWith Reduced Ejection Fraction Using Deep Learning-Based Natural Language Processing.

The lack of automated tools for measuring care quality limits the implementation of a national program to assess guideline-directed care in heart failure with reduced ejection fraction (HFrEF). The authors aimed to automate the identification of patients with HFrEF at hospital discharge, an opportunity to evaluate and improve the quality of care. The authors developed a novel deep-learning language model for identifying patients with HFrEF from discharge summaries of hospitalizations with heart failure at Yale New Haven Hospital during 2015 to 2019. HFrEF was defined by left ventricular ejection fraction<40% on antecedent echocardiography. The authors externally validated the model at Northwestern Medicine, community hospitals of Yale, and the MIMIC-III (Medical Information Mart for Intensive Care III) database. A total of 13,251 notes from 5,392 unique individuals (age 73 ± 14 years, 48% women), including 2,487 patients with HFrEF (46.1%), were used for model development (train/held-out: 70%/30%). The model achieved an area under receiver-operating characteristic curve (AUROC) of 0.97 and area under precision recall curve (AUPRC) of 0.97 in detecting HFrEF on the held-out set. The model had high performance in identifying HFrEF with AUROC=0.94 and AUPRC=0.91 on 19,242 notes from Northwestern Medicine, AUROC=0.95 and AUPRC=0.96 on 139 manually abstracted notes from Yale community hospitals, and AUROC=0.91 and AUPRC=0.92 on 146 manually reviewed notes from MIMIC-III. Model-based predictions of HFrEF corresponded to a net reclassification improvement of 60.2 ± 1.9% compared with diagnosis codes (P< 0.001). The authors developed a language model that identifies HFrEF from clinical notes with high precision and accuracy, representing a key element in automating quality assessment for individuals with HFrEF.

Combining 2.5D deep learning and conventional features in a joint model for the early detection of sICH expansion.

The study aims to investigate the potential of training efficient deep learning models by using 2.5D (2.5-Dimension) masks of sICH. Furthermore, it intends to evaluate and compare the predictive performance of a joint model incorporating four types of features with standalone 2.5D deep learning, radiomics, radiology, and clinical models for early expansion in sICH. A total of 254 sICH patients were enrolled retrospectively and divided into two groups according to whether the hematoma was enlarged or not. The 2.5D mask of sICH is constructed with the maximum axial, coronal and sagittal planes of the hematoma, which is used to train the deep learning model and extract deep learning features. Predictive models were built on clinic, radiology, radiomics and deep learning features separately and four type features jointly. The diagnostic performance of each model was measured using the receiver operating characteristic curve (AUC), Accuracy, Recall, F1 and decision curve analysis (DCA). The AUCs of the clinic model, radiology model, radiomics model, deep learning model, joint model, and nomogram model on the train set (training and Cross-validation) were 0.639, 0.682, 0.859, 0.807, 0.939, and 0.942, respectively, while the AUCs on the test set (external validation) were 0.680, 0.758, 0.802, 0.857, 0.929, and 0.926. Decision curve analysis showed that the joint model was superior to the other models and demonstrated good consistency between the predicted probability of early hematoma expansion and the actual occurrence probability. Our study demonstrates that the joint model is a more efficient and robust prediction model, as verified by multicenter data. This finding highlights the potential clinical utility of a multifactorial prediction model that integrates various data sources for prognostication in patients with intracerebral hemorrhage. The Critical Relevance Statement: Combining 2.5D deep learning features with clinic features, radiology markers, and radiomics signatures to establish a joint model enabling physicians to conduct better-individualized assessments the risk of early expansion of sICH.

Channel randomisation: Self-supervised representation learning for reliable visual anomaly detection in speciality crops

Modern, automated quality control systems for speciality crops utilise computer vision together with a machine learning paradigm exploiting large datasets for learning efficient crop assessment components. To model anomalous visuals, data augmentation methods are often developed as a simple yet powerful tool for manipulating readily available normal samples. State-of-the-art augmentation methods embed arbitrary “structural” peculiarities in normal images to build a classifier of these artefacts (i.e., pretext task), enabling self-supervised representation learning of visual signals for anomaly detection (i.e., downstream task). In this paper, however, we argue that learning such structure-sensitive representations may be suboptimal for agricultural anomalies (e.g., unhealthy crops) that could be better recognised by a different type of visual element like “colour”.To be specific, we propose Channel Randomisation (CH-Rand)—a novel data augmentation method that forces deep neural networks to learn effective encoding of “colour irregularities” under self-supervision whilst performing a pretext task to discriminate channel-randomised images. Extensive experiments are performed across various types of speciality crops (apples, strawberries, oranges, and bananas) to validate the informativeness of learnt representations in detecting anomalous instances. Our results demonstrate that CH-Rand’s representations are significantly more reliable and robust, outperforming state-of-the-art methods (e.g., CutPaste) that learn structural representations by over 43% in Area Under the Precision–Recall Curve (AUC–PR), particularly for strawberries. Additional experiments suggest that adopting the L∗a∗b∗ colour space and “curriculum” learning in the pretext task — gradually disregarding channel combinations for unrealistic outcomes — further improves downstream-task performance by 16% in AUC–PR. In particular, our experiments employ Riseholme-2021, a novel speciality crop dataset consisting of 3.5K real strawberry images gathered in situ from the real farm, along with the Fresh & Stale public dataset. All our code and datasets are made publicly available online to ensure reproducibility and encourage further research in agricultural technologies.

IGATTLDA: Integrative graph attention and transformer-based model for predicting lncRNA-Disease associations.

Long non-coding RNAs (lncRNAs) have emerged as significant contributors to the regulation of various biological processes, and their dysregulation has been linked to a variety of human disorders. Accurate prediction of potential correlations between lncRNAs and diseases is crucial for advancing disease diagnostics and treatment procedures. The authors introduced a novel computational method, iGATTLDA, for the prediction of lncRNA-disease associations. The model utilised lncRNA and disease similarity matrices, with known associations represented in an adjacency matrix. A heterogeneous network was constructed, dissecting lncRNAs and diseases as nodes and their associations as edges. The Graph Attention Network (GAT) is employed to process initial features and corresponding adjacency information. GAT identified significant neighbouring nodes in the network, capturing intricate relationships between lncRNAs and diseases, and generating new feature representations. Subsequently, the transformer captures global dependencies and interactions across the entire sequence of features produced by the GAT. Consequently, iGATTLDA successfully captures complex relationships and interactions that conventional approaches may overlook. In evaluating iGATTLDA, it attained an area under the receiver operating characteristic (ROC) curve (AUC) of 0.95 and an area under the precision recall curve (AUPRC) of 0.96 with a two-layer multilayer perceptron (MLP) classifier. These results were notably higher compared to the majority of previously proposed models, further substantiating the model's efficiency in predicting potential lncRNA-disease associations by incorporating both local and global interactions. The implementation details can be obtained from https://github.com/momanyibiffon/iGATTLDA.

YOLOv8-Based Drone Detection: Performance Analysis and Optimization

The extensive utilization of drones has led to numerous scenarios that encompass both advantageous and perilous outcomes. By using deep learning techniques, this study aimed to reduce the dangerous effects of drone use through early detection of drones. The purpose of this study is the evaluation of deep learning approaches such as pre-trained YOLOv8 drone detection for security issues. This study focuses on the YOLOv8 model to achieve optimal performance in object detection tasks using a publicly available dataset collected by Mehdi Özel for a UAV competition that is sourced from GitHub. These images are labeled using Roboflow, and the model is trained on Google Colab. YOLOv8, known for its advanced architecture, was selected due to its suitability for real-time detection applications and its ability to process complex visual data. Hyperparameter tuning and data augmentation techniques were applied to maximize the performance of the model. Basic hyperparameters such as learning rate, batch size, and optimization settings were optimized through iterative experiments to provide the best performance. In addition to hyperparameter tuning, various data augmentation strategies were used to increase the robustness and generalization ability of the model. Techniques such as rotation, scaling, flipping, and color adjustments were applied to the dataset to simulate different conditions and variations. Among the augmentation techniques applied to the specific dataset in this study, rotation was found to deliver the highest performance. Blurring and cropping methods were observed to follow closely behind. The combination of optimized hyperparameters and strategic data augmentation allowed YOLOv8 to achieve high detection accuracy and reliable performance on the publicly available dataset. This method demonstrates the effectiveness of YOLOv8 in real-world scenarios, while also highlighting the importance of hyperparameter tuning and data augmentation in increasing model capabilities. To enhance model performance, dataset augmentation techniques including rotation and blurring are implemented. Following these steps, a significant precision value of 0.946, a notable recall value of 0.9605, and a considerable precision–recall curve value of 0.978 are achieved, surpassing many popular models such as Mask CNN, CNN, and YOLOv5.

Extracting seizure control metrics from clinic notes of patients with epilepsy: A natural language processing approach

ObjectivesMonitoring seizure control metrics is key to clinical care of patients with epilepsy. Manually abstracting these metrics from unstructured text in electronic health records (EHR) is laborious. We aimed to abstract the date of last seizure and seizure frequency from clinical notes of patients with epilepsy using natural language processing (NLP). MethodsWe extracted seizure control metrics from notes of patients seen in epilepsy clinics from two hospitals in Boston. Extraction was performed with the pretrained model RoBERTa_for_seizureFrequency_QA, for both date of last seizure and seizure frequency, combined with regular expressions. We designed the algorithm to categorize the timing of last seizure (“today”, “1–6 days ago”, “1–4 weeks ago”, “more than 1–3 months ago”, “more than 3–6 months ago”, “more than 6–12 months ago”, “more than 1–2 years ago”, “more than 2 years ago”) and seizure frequency (“innumerable”, “multiple”, “daily”, “weekly”, “monthly”, “once per year”, “less than once per year”). Our ground truth consisted of structured questionnaires filled out by physicians. Model performance was measured using the areas under the receiving operating characteristic curve (AUROC) and precision recall curve (AUPRC) for categorical labels, and median absolute error (MAE) for ordinal labels, with 95 % confidence intervals (CI) estimated via bootstrapping. ResultsOur cohort included 1773 adult patients with a total of 5658 visits with reported seizure control metrics, seen in epilepsy clinics between December 2018 and May 2022. The cohort average age was 42 years old, the majority were female (57 %), White (81 %) and non-Hispanic (85 %). The models achieved an MAE (95 % CI) for date of last seizure of 4 (4.00–4.86) weeks, and for seizure frequency of 0.02 (0.02–0.02) seizures per day. ConclusionsOur NLP approach demonstrates that the extraction of seizure control metrics from EHR is feasible allowing for large-scale EHR research.

IMPLICATIONS OF COMPUTE AND INTERPRETABILITY FOR THE DIFFERENT SDN SECURITY MODELS

The main focus of this project is to design and implement an IDS for SDNs that are currently causing great interest in the networking society. Making the control plane and the data plane modularity, SDNs provide a higher level of flexibility and programming capabilities to manage the network but concurrently budding novel security risks. Several machine learning algorithms are in use such as the Logistic Regression, Decision Tree, Random Forest, etc. , which are used to identify malice within the network. As for the dataset sdn_intrusion. csv, preprocessing steps included were cleaning where missing values were managed, categorical data was encoded as well as handling for outliers existed. This paper applied feature selection by analysing correlation between the input features and the target variable with the aim of enhancing the model accuracy. The models were assessed with cross validation and several metrics like accuracy, Precision, Recall, F1 score, AUC and the results are quantitatively and qualitatively presented in the form of confusion matrices, ROC and Precision Recall curves. As the findings indicate, Extended Trees (Extra Trees Classifier) and Histograms Gradient Boosting models are efficient in identifying intrusions within SDN architectures. In conclusion, the study highlights the necessity of the proper choice of the machine learning algorithm and preliminary data processing for the effective IDS construction in SDNs, which enhances the readiness level of the networks against cyber threats. KEYWORDS: Software Defined Networks, Intrusion Detection System, Machine Learning, Network Security, Logistic Regression, Extra Trees Classifier, Random Forest, LightGBM, Precision-Recall Curve, ROC Curve.

Focal cortical dysplasia (type II) detection with multi-modal MRI and a deep-learning framework

Focal cortical dysplasia type II (FCD-II) is a prominent cortical development malformation associated with drug-resistant epileptic seizures that leads to lifelong cognitive impairment. Efficient MRI, followed by its analysis (e.g., cortical abnormality distinction, precise localization assistance, etc.) plays a crucial role in the diagnosis and supervision (e.g., presurgery planning and postoperative care) of FCD-II. Involving machine learning techniques particularly, deep-learning (DL) approaches, could enable more effective analysis techniques. We performed a comprehensive study by choosing six different well-known DL models, three image planes (axial, coronal, and sagittal) of two MRI modalities (T1w and FLAIR), demographic characteristics (age and sex) and clinical characteristics (brain hemisphere and lobes) to identify a suitable DL model for analysing FCD-II. The outcomes show that the DenseNet201 model is more suitable because of its superior classification accuracy, high-precision, F1-score, and large area under the receiver operating characteristic (ROC) curve and precision–recall (PR) curve.

Predicting Depression Among Chinese Patients with Narcolepsy Type 1: A Machine-Learning Approach.

Depression is a common psychiatric issue among patients with narcolepsy type 1 (NT1). Effective management requires accurate screening and prediction of depression in NT1 patients. This study aims to identify relevant factors for predicting depression in Chinese NT1 patients using machine learning (ML) approaches. A total of 203 drug-free NT1 patients (aged 5-61), diagnosed based on the ICSD-3 criteria, were consecutively recruited from the Sleep Medicine Center at Peking University People's Hospital between September 2019 and April 2023. Depression, daytime sleepiness, and impulsivity were assessed using the Center for Epidemiologic Studies Depression Scale for Children (CES-DC) or the Self-Rating Depression Scale (SDS), the Epworth Sleepiness Scale for adult or children and adolescents (ESS or ESS-CHAD), and the Barratt Impulse Scale (BIS-11). Demographic characteristics and objective sleep parameters were also analyzed. Three ML models-Logistic Regression (LR), Random Forest (RF), and Support Vector Machine (SVM)-were used to predict depression. Model performance was evaluated using receiver operating curve (AUC), accuracy, precision, recall, F1 score, and decision curve analysis (DCA). The LR model identified hallucinations (OR 2.21, 95% CI 1.01-4.90, p = 0.048) and motor impulsivity (OR 1.10, 95% CI 1.02-1.18, p = 0.015) as predictors of depression. Among the ML models, SVM showed the best performance with an AUC of 0.653, accuracy of 0.659, sensitivity of 0.727, and F1 score of 0.696, reflecting its effectiveness in integrating sleep-related and psychosocial factors. This study highlights the potential of ML models for predicting depression in NT1 patients. The SVM model shows promise in identifying patients at high risk of depression, offering a foundation for developing a data-driven, personalized decision-making tool. Further research should validate these findings in diverse populations and include additional psychological variables to enhance model accuracy.

Fund transfer fraud detection: Analyzing irregular transactions and customer relationships with self-attention and graph neural networks

This paper presents a method for identifying fraudulent fund transfers using real bank data, analyzing customer information, transactional activities, and customer relationships. The preprocessing step transforms high-dimensional, irregular transaction time series into regular time series, then further compresses them in a latent space using a self-attention-based autoencoder. To address the scarcity of fraudulent data samples and mitigate training issues caused by data imbalance, various deep generative models, including the conditional variational autoencoder and Wasserstein generative adversarial network, are applied to generate additional fraudulent raw data and augment fraud samples in latent space. The reparameterization trick is integrated into the encoder–decoder structure to boost the model’s generative capabilities. Additionally, a Graph Neural Network (GNN) is used to model customer relationships. The proposed approach utilizes end-to-end learning, integrating the autoencoder’s reconstruction loss, KL divergence loss (when reparameterization trick is applied), and classification loss for fraud detection. To optimize computational resources, neighborhood sampling for GNN is combined with mini-batch training for the autoencoder, improving both training efficiency and model reliability. Comprehensive experiments demonstrate the effectiveness of the proposed fusion network, highlighting the importance of each component and preprocessing step. For example, the areas under the precision–recall curves for fraud detection show notable improvements in our model. For suspicious transactions identified by the bank’s rules, other models range from 0.66% to 22.15%, while our model reached 27%. For non-suspicious transactions, other models range from 2.53% to 22.00%, with our model achieving 22.90%. This model has potential for wider applications in anomaly detection, particularly in datasets with irregular time series and complex customer relationships.