Recalcitrant Organic Matter Research Articles

Peatland Fungal Community Responses to Nutrient Enrichment: A Story Beyond Nitrogen.

Anthropogenically elevated inputs of nitrogen (N), phosphorus (P), and potassium (K) can affect the carbon (C) budget of nutrient-poor peatlands. Fungi are intimately tied to peatland C budgets due to their roles in organic matter decomposition and symbioses with primary producers; however, the influence of fertilization on peatland fungal composition and diversity remains unclear. Here, we examined the effect of fertilization over 10 years on fungal diversity, composition, and functional guilds along an acrotelm (10-20 cm), mesotelm (30-40 cm), and catotelm (60-70 cm) depth gradient at the Mer Bleue bog, Canada. Simultaneous N and PK additions decreased the relative abundance of ericoid mycorrhizal fungi and increased ectomycorrhizal fungi and lignocellulose-degrading fungi. Fertilization effects were not more pronounced in the acrotelm relative to the catotelm, nor was there a shift toward nitrophilic taxa after N addition. The direct effect of fertilization significantly decreased the abundance of Sphagnum-associated fungi, primarily owing to the overarching role of limiting nutrients rather than a decline in Sphagnum cover. Increased nutrient loading may threaten peatland C stocks if lignocellulose-degrading fungi become abundant and accelerate decomposition of recalcitrant organic matter. Additionally, future changes in plant communities, strong water table fluctuations, and peat subsidence after long-term nutrient loading may also influence fungal functional guilds and depth-dependencies of fungal community structure.

Fire and salvage logging increased recalcitrant soil organic matter and reduced soil functionality in Mediterranean pine forests.

Postfire management actions are used to mitigate damage caused by wildfires. Salvage logging, often employed to restore ecosystem functions in burnt stands, plays an essential role in reducing economic losses and the burn severity of future wildfires. However, its ecological implications for soil functionality still need to be understood, especially in the Mediterranean basin, which is prone to erosion and desertification. This study aimed to investigate the effects of fire on (i) soil organic matter (SOM) quality and composition using differential scanning calorimetry-thermogravimetry (DSC-TG) and solid-state nuclear magnetic resonance (13C CPMAS NMR) and (ii) phosphorus (P) forms using solid-state 31P NMR spectroscopy in a wildfire that affected 3200 ha in southeastern Spain in July 2017. One year after the fire, we monitored four Pinus halepensis Mill. stand categories based on soil burn severity (SBS): unburnt, low SBS, high SBS and high SBS areas with salvage logging (n=36, nine plots per SBS level). We collected soil samples and analysed soil pH, SOM content and SOM quality, along with biological activity indicators (carbon biomass, basal respiration, β-glucosidase, phosphatase activities) and P forms. We ran ANOVA statistical tests to identify significant differences in soil properties among SBS levels. We also established general linear regressions of thermo-recalcitrance values and aromaticity with biological soil quality indices to compare both techniques for detecting changes in SOM quality and composition. The results indicated that fire increased soil pH (up to 0.3), particularly in the plots with higher SBS levels. SOM decreased significantly with increasing SBS level (down to < 5 % at the high SBS level), with a shift from labile compounds (carbohydrates) to more recalcitrant ones (aromatics). Organic P forms were depleted, while orthophosphate levels rose, increasing the risk of irreversible fixation. This study also highlights that DSC-TG is a cost-effective technique for assessing SOM quality changes. Understanding these effects is essential for developing policies to conserve and restore fire-affected areas and to promote practices that enhance soil functionality and resilience.

Nutrient-loaded seagrass litter experiences accelerated recalcitrant organic matter decay

High coastal nutrient loading can cause changes in seagrass chemistry traits that may lead to variability in seagrass litter decomposition processes. Such changes in decomposition have the potential to alter the carbon (C) sequestration capacity within seagrass meadows (‘blue carbon’). However, the external and internal factors that drive the variability in decomposition rates of the different organic matter (OM) types of seagrass are poorly understood, especially recalcitrant OM (i.e. cellulose-associated OM and lignin-associated OM), thereby limiting our ability to evaluate the C sequestration potential. It was conducted a laboratory incubation to compare differences in the decomposition of Halophila beccarii litter collected from seagrass meadows with contrasting nutrient loading histories. The exponential decay constants of seagrass litter mass, cellulose-associated OM and lignin-associated OM were 0.009–0.032, 0.014–0.054 and 0.009–0.033 d−1, respectively. The seagrass litter collected from meadows with high nutrient loading exhibited greater losses of mass (25.0–41.2 %), cellulose-associated OM (2.8–18.5 %) and lignin-associated OM (9.6–31.2 %) than litter from relatively low nutrient loading meadows. The initial and temporal changes of the litter nitrogen (N) and phosphorus (P) concentrations, stoichiometric ratios of lignin/N, C/N, and C/P, and cellulose-associated OM content, were strongly correlated with the losses of litter mass and different types of OM. Further, temporal changes of litter C and OM types, particularly the OM and labile OM concentrations, were identified as the main driving factors for the loss of litter mass and loss of different OM types. These results indicated that nutrient-loaded seagrass litter, characterized by elevated nutrient levels and diminished amounts of recalcitrant OM, exhibits an accelerated decay rate for the recalcitrant OM. These differences in litter quality would lead to a reduced contribution of seagrass litter to long-term C stocks in eutrophic meadows, thereby weakening the stability of C sequestration. Considering the expected changes in seagrass litter chemistry traits and decay rates due to long-term nutrient loading, this study provides useful information for improving C sequestration capabilities through effective pollution management.

Spartina alterniflora invasion reduces soil microbial diversity and weakens soil microbial inter-species relationships in coastal wetlands.

Soil microorganisms play a crucial role in the plant invasion process, acting as both drivers of and responders to plant invasion. However, the effects of plant invasion on the complexity and stability of co-occurrence networks of soil microbial communities remain unclear. Here, we investigated how the invasion of Spartina alterniflora affected the diversity, composition, and co-occurrence networks of soil bacterial and fungal communities in the Yellow River Delta, China. Compared to the native plant (Suaeda salsa), S. alterniflora invasion decreased the α-diversity of soil bacterial communities but did not affect that of fungal communities. The β-diversity of soil bacterial and fungal communities under S. salsa and S. alterniflora habitats also differed dramatically. S. alterniflora invasion increased the relative abundance of the copiotrophic phylum Bacteroidota, whereas decreased the relative abundances of the oligotrophic phyla Acidobacteriota and Gemmatimonadota. Additionally, the relative abundance of Chytridiomycota, known for its role in degrading recalcitrant organic matter, increased substantially within the soil fungal community. Functional predictions revealed that S. alterniflora invasion increased the relative abundance of certain soil bacteria involved in carbon and nitrogen cycling, including aerobic chemoheterotrophy, nitrate reduction, and nitrate respiration. More importantly, S. alterniflora invasion reduced the complexity and stability of both soil bacterial and fungal community networks. The shifts in soil microbial community structure and diversity were mainly induced by soil available nutrients and soil salinity. Overall, our study highlights the profound impacts of S. alterniflora invasion on soil microbial communities, which could further indicate the modification of ecosystem functioning by invasive species.

Development of a floating constructed wetland for landfill leachate treatment and its potential to remove recalcitrant organic matter

The development of simple and economical treatment technologies for the removal of recalcitrant organic matter is required to achieve long-term and sustainable treatment of landfill leachates in tropical regions. In this study, we evaluated the fundamental properties required to develop the floating constructed wetland (FCW), which consists of a buoyant planting unit made of foamed glass and cattails. The results showed that foamed glass alone can be used as a planting substrate for cattails. Treatment of a synthetic landfill leachate by a lab-scale FCW demonstrated that the test system effectively and continuously removed recalcitrant organic matter, whereas the control system did not. This removal by FCW was shown to proceed through nearly equal contributions from adsorption and potential biological processes. Furthermore, the effect of introducing an FCW in an actual waste landfill site in Thailand was simulated using the parameters obtained from this study. The simulation indicated that the introduction of the FCW into the stabilisation pond was effective in reducing both leachate volume and recalcitrant organic matter. It is important to determine how much of the stabilisation pond should be covered with the FCW for cost-effectiveness. The FCW is expected to contribute to improving long-term, sustainable, and appropriate management of landfill leachate in tropical developing countries.

Long-term straw return promotes accumulation of stable soil dissolved organic matter by driving molecular-level activity and diversity

Agricultural management practices play pivotal roles in affecting soil organic matter formation pathways, particularly through changes in soil dissolved organic matter (DOM). The potential effects of long-term straw return on the molecular-level activity and transformations of DOM were investigated in this study. Over 9 years, the soil DOM from straw return had high stability, unsaturation degree, oxidability, and strong aromaticity. The relative abundance of biologically refractory DOM components (i.e., lignin-, condensed aromatic-, and tannin-like formulas) increased by 4 %-33 %, whereas the relative abundance of biodegradable DOM components (i.e., lipids and protein/amino sugar-like formulas) decreased by 15 %-23 % under straw return. Furthermore, the positive effects of straw return on the intergroup transformations of biologically refractory compounds favored the persistence of recalcitrant organic matter in the soil. Importantly, intragroup transformations of recalcitrant-active molecules and biologically refractory compounds were critical pathways for stable DOM accumulation under straw return, and these were mainly driven by thermodynamically limited processes. Thus, our results indicated that long-term straw return promoted the persistence of stabilized soil DOM by driving molecular-level activity and diversity.

Model-based development of cell voltage control system for modified bio-electro-Fenton process

A modified bio-electro-Fenton (M−BEF) process with a cell voltage control system that improves the efficiency of organic removal and energy savings is demonstrated. The M−BEF process can accomplish bioelectricity generation, H2O2 production, and the Fenton reaction in a continuous-flow reactor. During synthetic wastewater treatment containing biodegradable (glucose) and recalcitrant (biphenyl) organic matter, the effluent chemical oxygen demand (COD) concentration was maintained between 2 and 6 mg L-1. To investigate the impact of different operating schemes on energy usage, model-based design (MBD) modeling and simulations were performed, which showed that COD removal efficiency without an external voltage supply was unstable at < 70 %. The automatic cell voltage control system saved 90 % of the power compared to the continuous cell voltage supply system. Further testing on more environmental samples and pollutants will enable real-time optimization of supplied power and wastewater treatment using the cell voltage control system.

Aggregate stability and carbon and N dymamics in macroaggregate size fractions with different soil texture

Soil nutrient cycling, the distribution of soil aggregates, and their stability are directly influenced by soil texture. Different sizes of soil aggregates provide microhabitats for microorganisms and therefore influence soil carbon (C) and nitrogen (N) mineralization. The purpose of the present study was to assess the aggregate stability and dynamics of carbon and nitrogen in macroaggregate size fractions (1-8 mm) with different clay content from meadow soils. Surface soil samples (0-15 cm) were collected from 4- to 5-year-old forage crops. Four macroaggregate size classes were isolated by dry sieving and analyzed for their mass proportions: fine macroaggregates (FM) (less than 1 mm), medium-fine macroaggregates (MFM) (1-2 mm), medium-coarse macroaggregates (MCM) (2-4 mm), and large-coarse macroaggregates (LCM) (4-8 mm). The dry mean weight diameter (MWD), organic carbon (OC), total nitrogen (TN), carbon and nitrogen of microbial biomass (C-MB, N-MB) were determined. CO2 emission and net nitrogen mineralized (NM) were measured after 14 weeks of incubation. The amounts of FM were significantly lower than those of intermediate macroaggregates (MCM and MFM) and decreased markedly with increasing clay content within soil macroaggregates. In general, the amounts of macroaggregate size fractions were lowest in soils with high clay content. MWD exhibited a significant correlation with particle size distribution, OC, and MB-C. OC, TN, MB-C, and MB-N contents within macroaggregates increased with decreasing macroaggregate size and increasing clay content of macroaggregate fractions. The CO2 emission and NM content increased with increasing macroaggregate size, indicating higher organic C and N mineralization activity in larger macroaggregates. Mineralization of OC was lowest in macroaggregate fractions with the highest clay content. We conclude that clay content can increase the protection of microbial biomass in meadow soils. Small macroaggregates tend to contain more recalcitrant organic matter compared to larger macroaggregates.

Microbial metabolic capacity regulates the accrual of mineral-associated organic carbon in subtropical paddy soils

In general, the accrual of mineral-associated organic C (MAOC) level is limited by the finite area of reactive minerals. However, microbial metabolism probably affects MAOC accumulation and saturation because microbial necromass C constitutes the primary component of MAOC. To address this gap in current understanding, we used 18O–H2O incubation and biomarker analyses to quantify microbial C metabolism and necromass accumulation respectively, and quantify their relationship with MAOC and saturation levels across gradients of soil organic C (SOC) that ranged from 4.0 to 40.1 g kg−1 in subtropical paddy soils. Results showed that particulate organic C (POC) increased linearly as SOC increased whilst MAOC tended to saturation. Notably, MAOC accumulation showed a significant positive relationship to increases in microbial necromass C indicating that MAOC accumulation prior to saturation was closely linked to the activity of microbial C metabolism. Compared with low C soils, lower microbial growth efficiencies (qgrowth) and slower biomass turnover rates were observed in high C soils. Moreover, the necromass accumulation coefficient (i.e. necromass produced per unit of microbial biomass) was also lower in high C soils than in low C soils. The lower microbial growth efficiency in the high C soils was attributed to greater C/P and higher clay proportion, which decreased microbial biosynthesis and substrate accessibility. Microbial communities showed adaptive shifts in composition to modulate bacterial metabolic activity, with increases in the relative abundance of r-strategists and decreases in the K-strategists. Management strategies for actively increasing the size of the MAOC pool, by bolstering microbial anabolism and necromass accumulation, are essential for increasing the MAOC content in paddy soils where the MAOC is unsaturated. For high C soils, where the MAOC is already saturated, the use of structural and recalcitrant organic materials to increase the size of the POC pool is needed to enhance carbon sequestration efforts.

Effect of Mild Organic Substitution on Soil Quality and Microbial Community

Mild organic substitution is advantageous for sustainable agricultural development. In order to determine the proper fertilization strategy, it is essential to investigate the impact of substituting chemical fertilizers with varying levels of organic manure on soil nutrients, microbial communities, and crop productivity. Four treatments were implemented: no fertilizer, sole chemical fertilizer, 20% organic manure substitution, and 40% organic manure substitution. Bacterial and fungal communities were characterized through high-throughput sequencing of the 16S rRNA gene V3–V4 region and the V4 region, respectively. The 20% and 40% organic manure substitutions increased soil organic matter (SOM) content, total nitrogen (TN) content, and reduced soil pH compared to the control (CK). The 20% organic manure substitution showed the most significant improvements in soil alkaline phosphatase, urease, and invertase activities. Soil nutrient enhancement increased bacterial alpha diversity, with a milder impact on fungal alpha diversity compared to bacteria. Different fertilization treatments elevated the relative abundance of bacterial Bacteroidetes (8.11%, 21.25%, and 1.88%), Actinomycetes (12.65%, 26.36%, and 15.33%), and fungal Ascomycota (16.19%, 10.44%, and 12.69%), known for degrading recalcitrant organic matter. The sole chemical fertilizer treatment increased the pathogenic Cheatotryiales. Shared species, primarily from bacterial Actinomycetes, Firmicutes, Proteobacteria, and fungal Ascomycota phyla, were found at 20% and 40% organic manure substitution levels. Specifically, the 20% organic manure substitution level promoted the relative abundance of beneficial plant growth-promoting taxa, Oxalobacteraceae and Massilia, and suppressed pathogens, with an increase in the relative abundance of the Purpureocillium genus and Mortierellomycota. These findings suggest that a 20% OF substitution can maintain crop yield, enhance soil nutrients and enzyme activities by fostering beneficial soil bacteria, inhibiting soil-borne pathogens, and refining microbial community structure.

A pilot study suggests the correspondence between SAR202 bacteria and dissolved organic matter in the late stage of a year-long microcosm incubation.

SAR202 bacteria are abundant in the marine environment and they have been suggested to contribute to the utilization of recalcitrant organic matter (RDOM) within the ocean's biogeochemical cycle. However, this functional role has only been postulated by metagenomic studies. During a one-year microcosm incubation of an open ocean microbial community with lysed Synechococcus and its released DOM, SAR202 became relatively more abundant in the later stage (after day 30) of the incubation. Network analysis illustrated a high degree of negative associations between SAR202 and a unique group of molecular formulae (MFs) in phase 2 (day 30 to 364) of the incubation, which is empirical evidence that SAR202 bacteria are major consumers of the more oxygenated, unsaturated, and higher-molecular-weight MFs. Further investigation of the SAR202-associated MFs suggested that they were potentially secondary products arising from initial heterotrophic activities following the amendment of labile Synechococcus-derived DOM. This pilot study provided a preliminary observation on the correspondence between SAR202 bacteria and more resistant DOM, further supporting the hypothesis that SAR202 bacteria play important roles in the degradation of RDOM and thus the ocean's biogeochemical cycle.

Soil recalcitrant but not labile organic nitrogen mineralization contributes to microbial nitrogen immobilization and plant nitrogen uptake.

Soil organic nitrogen (N) mineralization not only supports ecosystem productivity but also weakens carbon and N accumulation in soils. Recalcitrant (mainly mineral-associated organic matter) and labile (mainly particulate organic matter) organic materials differ dramatically in nature. Yet, the patterns and drivers of recalcitrant (MNrec) and labile (MNlab) organic N mineralization rates and their consequences on ecosystem N retention are still unclear. By collecting MNrec (299 observations) and MNlab (299 observations) from 57 15N tracing studies, we found that soil pH and total N were the master factors controlling MNrec and MNlab, respectively. This was consistent with the significantly higher rates of MNrec in alkaline soils and of MNlab in natural ecosystems. Interestingly, our analysis revealed that MNrec directly stimulated microbial N immobilization and plant N uptake, while MNlab stimulated the soil gross autotrophic nitrification which discouraged ammonium immobilization and accelerated nitrate production. We also noted that MNrec was more efficient at lower precipitation and higher temperatures due to increased soil pH. In contrast, MNlab was more efficient at higher precipitation and lower temperatures due to increased soil total N. Overall, we suggest that increasing MNrec may lead to a conservative N cycle, improving the ecosystem services and functions, while increasing MNlab may stimulate the potential risk of soil N loss.

Labile organic matter promotes nitrogen retention in natural and constructed gulf coast marshes

Coastal marshes mitigate allochthonous nitrogen (N) inputs to adjacent marine habitat; however, their extent is declining rapidly. As a result, marsh restoration and construction have become a major foci of wetland management. Constructed marshes can quickly reach similar plant biomass to natural marshes, but biogeochemical functions like N removal and retention can take decades to reach functional equivalency, often due to lags in organic matter (OM) pools development in newly constructed marshes. We compared denitrification and dissimilatory nitrate reduction to ammonium (DNRA) rates in a 32 year-old constructed marsh and adjacent reference marsh in the Northern Gulf of Mexico. Marsh sediments packed into 3 mm “thin discs” were subjected to three OM quality treatments (no OM addition, labile OM, or recalcitrant OM) and two N treatments (ambient nitrate or elevated nitrate) during a 13 day incubation. We found that OM addition, rather than marsh type or nitrate treatment, was the most important driver of nitrate reduction, increasing both denitrification and DNRA and promoting DNRA over denitrification in both marshes. Fungal and bacterial biomass were higher in the natural marsh across treatments, but recalcitrant OM increased fungal biomass in the constructed marsh, suggesting OM-limitation of fungal growth. We found that constructed marshes are capable of similar denitrification and DNRA as natural marshes after 30 years, and that labile OM addition promotes N retention in both natural and constructed marshes.Graphical Conceptual figure highlighting the findings of this experiment. Under control treatment with no C addition (bottom panel), constructed and natural marshes have similar rates of both DNRA and denitrification. The natural marsh has higher fungal and bacterial biomass, while fungal biomass is not detectable in the constructed marsh. Under labile OM additions (upper left panel), rates of both DNRA and denitrification are increased and DNRA becomes favored over denitrification in both marshes. Recalcitrant OM additions (upper right) increase denitrification, but do not affect DNRA or % denitrification. The addition of recalcitrant OM also increases the detectability of fungal biomass in the constructed marsh.

Impacts of humic substances, elevated temperature, and UVB radiation on bacterial communities of the marine sponge Chondrilla sp.

Sponges are abundant components of coral reefs known for their filtration capabilities and intricate interactions with microbes. They play a crucial role in maintaining the ecological balance of coral reefs. Humic substances (HS) affect bacterial communities across terrestrial, freshwater, and marine ecosystems. However, the specific effects of HS on sponge-associated microbial symbionts have largely been neglected. Here, we used a randomized-controlled microcosm setup to investigate the independent and interactive effects of HS, elevated temperature, and UVB radiation on bacterial communities associated with the sponge Chondrilla sp. Our results indicated the presence of a core bacterial community consisting of relatively abundant members, apparently resilient to the tested environmental perturbations, alongside a variable bacterial community. Elevated temperature positively affected the relative abundances of ASVs related to Planctomycetales and members of the families Pseudohongiellaceae and Hyphomonadaceae. HS increased the relative abundances of several ASVs potentially involved in recalcitrant organic matter degradation (e.g., the BD2-11 terrestrial group, Saccharimonadales, and SAR202 clade). There was no significant independent effect of UVB and there were no significant interactive effects of HS, heat, and UVB on bacterial diversity and composition. The significant, independent impact of HS on the composition of sponge bacterial communities suggests that alterations to HS inputs may have cascading effects on adjacent marine ecosystems.

Water aging and the quality of organic carbon sources drive niche partitioning of the active bathypelagic prokaryotic microbiome

AbstractDue to the scarcity of organic matter (OM) sources in the bathypelagic (1000–4000 m depth), prokaryotic metabolism is believed to be concentrated on particles originating from the surface. However, the structure of active bathypelagic prokaryotic communities and how it changes across environmental gradients remains unexplored. Using a combination of 16S rRNA gene and transcripts sequencing, metagenomics, and substrate uptake potential measurements, here we aimed to explore how water masses aging and the quality of OM influence the structure of the active microbiome, and the potential implications for community function. We found that the relative contribution of taxa with a free‐living lifestyle to the active microbiome increased in older water masses that were enriched in recalcitrant OM, suggesting that these prokaryotes may also play a substantial role in the bathypelagic metabolism of vast areas of the ocean. In comparison to particle‐associated prokaryotes, free‐living prokaryotes exhibited lower potential metabolic rates, and harbored a limited number of two‐component sensory systems, suggesting they have less ability to sense and respond to environmental cues. In contrast, particle‐associated prokaryotes carried genes for particle colonization and carbohydrate utilization that were absent in prokaryotes with a free‐living lifestyle. Consistently, we observed that prokaryotic communities inhabiting older waters displayed reduced abilities to colonize particles, and higher capabilities to use complex carbon sources, compared to communities in waters with a higher proportion of labile OM. Our results provide evidence of regionalization of the bathypelagic active prokaryotic microbiome, unveiling a niche partitioning based on the quality of OM.

Controls and significance of priming effects in lake sediments

AbstractWarming and eutrophication influence carbon (C) processing in sediments, with implications for the global greenhouse‐gas budget. Temperature effects on sedimentary C loss are well understood, but the mechanism of change in turnover through priming with labile organic matter (OM) is not. Evaluating changes in the magnitude of priming as a function of warming, eutrophication, and OM stoichiometry, we incubated sediments with 13C‐labeled fresh organic matter (FOM, algal/cyanobacterial) and simulated future climate scenarios (+4°C and +8°C). We investigated FOM‐induced production of CH4 and microbial community changes. C loss was primed by up to 17% in dominantly allochthonous sediments (ranging from 5% to 17%), compared to up to 6% in autochthonous sediments (−9% to 6%), suggesting that refractory OM is more susceptible to priming. The magnitude of priming was dependent on sediment OM stoichiometry (C/N ratio), the ratio of fresh labile OM to microbial biomass (FOM/MB), and temperature. Priming was strongest at 4°C when FOM/MB was below 50%. Addition of FOM was associated with activation and growth of bacterial decomposers, including for example, Firmicutes, Bacteroidetes, or Fibrobacteres, known for their potential to degrade insoluble and complex structural biopolymers. Using sedimentary C/N &gt; 15 as a threshold, we show that in up to 35% of global lakes, sedimentation is dominated by allochthonous rather than autochthonous material. We then provide first‐order estimates showing that, upon increase in phytoplankton biomass in these lakes, priming‐enabled degradation of recalcitrant OM will release up to 2.1 Tg C annually, which would otherwise be buried for geological times.

Effects of stand density on the structure of soil microbial functional groups in Robinia pseudoacacia plantations in the hilly and gully region of the Loess Plateau, China

Elucidating the responses of soil microbial functional groups to changes in stand density is crucial for understanding the sustainability of forest development. In this study, we obtained soil samples from Robinia pseudoacacia plantations of three different stand densities (low, middle, and high densities of 750, 1125, and 1550 trees ha−1, respectively) in the hilly and gully region of the Loess Plateau, China. We sought to determine the effects of stand density on the structure of soil microbial functional groups. Stand density had no significant effects on species diversity indices of fungal trophic modes or bacterial functional groups involved in carbon (C) cycling and nitrogen (N) cycling. However, differences in stand density substantially altered the composition of fungal functional groups. In low-density plantations, saprophytic fungi were the main trophic mode, with a high relative abundance of ∼62 %, whereas the fungal communities associated with middle- and high-density plantations were dominated by other fungi with a combined trophic mode, which accounted for ∼43 % and ∼41 % of the fungal trophic modes, respectively. Furthermore, we detected increases in the relative abundance of plant pathogens, nitrifiers, and nitrous oxide-denitrifying bacteria with increasing stand density. Results of the Monte Carlo test showed that soil pH influenced the composition of soil fungal (but not bacterial) groups. These findings suggested that a high density of trees might inhibit the decomposition of recalcitrant organic material and stimulate nitrous oxide emission, consequently decreasing soil nutrient availability and stimulating soil N loss. Moreover, high-density stands might increase the potential risk for plant disease. Overall, the present study suggested that reducing stand density to coverage between 750 and 1125 trees ha−1 would increase soil nutrient availability and prevent N loss from the soil. To verify these suppositions, further research is needed to determine the links between microbial functional groups composition and soil biogeochemistry.

Enhanced Cr(VI) stabilization by terrestrial-derived soil protein: Photoelectrochemical properties and reduction mechanisms

Glomalin-related soil protein (GRSP) is a stable iron-organic carbon mixture that can enhance heavy metal sequestration in soils. However, the roles of GRSP in the transformation and fate of Cr(VI) have been rarely reported. Herein, we investigated the electrochemical and photocatalytic properties of GRSP and its mechanisms in Cr(VI) adsorption and reduction. Results showed that GRSP had a stronger ability for Cr(VI) adsorption and reduction than other biomaterials, with the highest adsorption amount of up to 0.126 mmol/g. The removal efficiency of Cr(VI) by GRSP was enhanced (4–7%) by ultraviolet irradiation due to the hydrated electrons produced by GRSP. Fe(II) ions, persistent free radicals, and oxygen-containing functional groups on the GRSP surface as electron donors participated in the reduction of Cr(VI) under dark condition. Moreover, Cr(III) was mainly adsorbed on the –COOH groups of GRSP via electrostatic interactions. Based on 2D correlation spectroscopy, the preferential adsorption occurred on the GRSP surface for Cr(VI) in the sequential order of CO → COO– → O–H → C–O. This work provides new insights into the Cr(VI) adsorption and reduction mechanism by GRSP. Overall, GRSP can serve as a natural iron-organic carbon for the photo-reduction of Cr(VI) pollution in environments.

Mitigating decomposition in agricultural peatlands: Influence of copper and polyphenol on C N P dynamics and enzyme activities in two contrasting soils

Drained agricultural peatlands are subject to degradation through decomposition, compaction, and erosion. This study aimed to (1) revisit an existing recommendation to systematically apply copper at a rate exceeding crop needs to slow the decomposition of agricultural peatlands, and (2) explore lignosulfonate, a polyphenol, as an alternative method to copper. Two peat soils with contrasting levels of humification (sapric and hemic) and differing Al and Fe contents were studied under controlled conditions. CO2 emissions cumulated in the two unamended soils differed importantly, representing 0.7 and 7.3 t C-CO2 ha−1 yr−1 (0–25 cm) in the sapric and hemic soil, respectively. In the sapric soil, copper did not affect CO2 emissions, N and P parameters, or the activity of most of the measured enzymes. In the same soil, lignosulfonate increased CO2 emissions and phenol oxidase activity, suggesting that the product acted as a microbial substrate. In the hemic soil, copper and lignosulfonate reduced cumulated CO2 emissions by 37 % and 61 %, respectively, as well as N parameters and phosphatase activity. The influence of both treatments on CO2 emissions was, however, temporary. This study suggests limited efficiency of copper and lignosulfonate when applied to soils where underlying mechanisms, such as organic matter recalcitrance and Al and Fe stabilization effect, already regulate decomposition rates. The divergent and temporary effects of copper found in this study and in the literature suggest that routine applications of copper at a rate exceeding crop needs is not consistently effective in slowing decomposition in agricultural peatlands. Lignosulfonate appears to be a promising alternative to copper. The inhibitory effect of polyphenol applications has been demonstrated in natural peatlands but, to our knowledge, this is the first time it has been reported for drained agricultural peatlands. Evaluating the influence of lignosulfonate on other drained agricultural peat soils and under field conditions is necessary to determine the potential of this approach.

Ancient organic matter in black shales as a carbon source for deep subsurface life

The fluids at black schist-rich bedrock in the Fennoscandian shield have been shown to carry extensive methane (Kietäväinen and Purkamo 2015, Kietäväinen et al. 2017). The sources of methane, abiotic, microbial, thermogenic, or their mixtures, are not well understood (Etiope and Sherwood Lollar 2013, Douglas et al. 2017). While previous field and laboratory studies have concentrated on oxic degradation of relatively low metamorphic grade black shales (e.g., Matlakowska et al. 2012, Petsch et al. 2005), our goal was to explore the genetic potential of microbial communities in naturally anoxic, oligotrophic and moderately saline bedrock fluids in contact with high-metamorphic grade organic carbon containing black schist. We tested if the microbial metabolisms could explain the extensive methane detected from the fluids at black schist -rich bedrock in the Fennoscandian shield. We aimed to determine the difference between abiotic and biotic methane formation in Palaeoproteorozoic bedrock using novel methane isotopologue measurements and evaluate the ability of natural microbial communities to use black schists as a carbon source in enrichment cultures and compare these to the previously reported cultures. Two study sites, namely the Outokumpu Deep Scientific Drill Hole at depth of 1470 m and Juuka/Miihkali116 overflowing deep drill hole in Finland, were selected for comprehensive geochemical and microbiological sampling. The sampling campaign involved collecting samples for methane isotopologues, intrinsic microbial community, and fluid for inoculation of laboratory microcosms. Ground and sterilized black shists of two different maturities obtained from Finnish bedrock, 13C-labeled graphite, cellulose, acetate and CO2 were used as different carbon sources for intrinsic deep subsurface fluids, and these microcosms were incubated for 8-20 months. Subsequently, the gas phase of the microcosms was analyzed for CH4, CO2, N2O, O2, and N2 concentrations, as well as isotopic ratios of carbon in CH4 and CO2. Bacterial, archaeal and fungal communities were characterized using phylogenetic marker gene amplicon sequencing from both the intrinsic deep subsurface fluids and the microcosms after the incubation period. The results of this study indicate that methane in these sites is likely formed abiotically, as evidenced by the isotopologue data and the absence of methanogenic archaea in the microbial communities. Moreover, the gas data and isotope ratios obtained from the microcosms suggest that graphitic carbon is predominantly transformed into carbon dioxide rather than methane, further supporting the isotopologue data. Throughout the incubation period, the microbial communities within the microcosms exhibited dynamic changes. Specific microbial groups known for their capacity to utilize complex or recalcitrant organic matter and xenobiotics were observed, indicative of the challenging, oligotrophic and nutrient-deficient subsurface environments. Moreover, microbes regarded as keystone species in the deep terrestrial biosphere were observed. This study sheds light on the processes driving methane formation and the associated microbial communities in ancient black shales. The findings suggest a predominantly abiotic origin for methane in these Finnish Palaeoproterozoic bedrock formations, highlighting the potential for alternative mechanisms of microbial carbon assimilation and the importance of microbial communities in carbon cycling in subsurface ecosystems.