Rates Of Species Accumulation Research Articles

The causes of species richness patterns among clades.

Two major types of species richness patterns are spatial (e.g. the latitudinal diversity gradient) and clade-based (e.g. the dominance of angiosperms among plants). Studies have debated whether clade-based richness patterns are explained primarily by larger clades having faster rates of species accumulation (speciation minus extinction over time; diversification-rate hypothesis) or by simply being older (clade-age hypothesis). However, these studies typically compared named clades of the same taxonomic rank, such as phyla and families. This study design is potentially biased against the clade-age hypothesis, since clades of the same rank may be more similar in age than randomly selected clades. Here, we analyse the causes of clade-based richness patterns across the tree of life using a large-scale, time-calibrated, species-level phylogeny and random sampling of clades. We find that within major groups of organisms (animals, plants, fungi, bacteria, archaeans), richness patterns are most strongly related to clade age. Nevertheless, weaker relationships with diversification rates are present in animals and plants. These overall results contrast with similar large-scale analyses across life based on named clades, which showed little effect of clade age on richness. More broadly, these results help support the overall importance of time for explaining diverse types of species richness patterns.

Specific features of parasite communities of Siberian cisco Coregonus sardinella in polytypic water bodies of the polar regions: species richness.

The article dwells upon characteristics of the species richness of parasite communities in least cisco Coregonus sardinella Valenciennes in Polar water bodies: Kureyskoye Reservoir, Lake Kutaramakan, Khatanga River. The communities consist of parasite species common in coregonids. The main species in all the parasite communities in least cisco are Dibothriocephalus ditremus and D. dendriticus. Triaenophorus crassus plerocercoids dominate in the regulated water body (Kureyskoye Reservoir). To analyze the species richness of the component communities (s), coefficients of the power-law equation s = a × nb were applied, where a is the expected species richness in the first host individual examined, and b is the rate of species accumulation in parasite component communities (s). The resulting curves of species accumulation give statistical rigor to the assessment of differences and similarities of the species richness of the component communities of parasites in least cisco of various ages and habitats. The species richness of infra- and component parasite communities in least cisco was found to be significantly lower in the lake and the storage reservoir than in riverine habitats (Khatanga River). At the same time, the species accumulation rate for parasite communities in least cisco from Lake Kutaramakan was higher than in the reservoir due to a higher diversity of parasite infracommunities.

Fifth mass extinction event triggered the diversification of the largest family of freshwater gastropods (Caenogastropoda: Truncatelloidea: Hydrobiidae).

The fifth mass extinction event (MEE) at the Cretaceous-Palaeogene (K-Pg) boundary 66 million years ago (Ma) led to massive species loss but also triggered the diversification of higher taxa. Five models have been proposed depending on whether this diversification occurred before, during or after the K-Pg boundary and the rate of species accumulation. While the effects of the K-Pg MEE on vertebrate evolution are relatively well understood, the impact on invertebrates, particularly in freshwater ecosystems, remains controversial. One example is the hyperdiverse Hydrobiidae-the most species-rich family of freshwater gastropods. Whereas some studies place its origin in the Jurassic or even Carboniferous, most fossil records postdate the K-Pg event. We therefore used robustly time-calibrated multi-locus phylogenies of >400 species representing >100 hydrobiid genera to unravel its evolutionary history and patterns of diversification. We found that the family started diversifying shortly after the K-Pg boundary (∼60 Ma; 95% highest posterior density 52-69 Ma). Lineage richness gradually increased to the present and phylogenetic diversity until ∼25 Ma. These findings suggest that diversification was not initially driven by ecological opportunity. Combining the two criteria of timing and rate of diversification, a soft-explosive diversification model of aquatic vertebrates best fits the patterns observed. We also show that most higher hydrobiid taxa (i.e. subfamilies) diversified from the Middle Oligocene to Middle Miocene (i.e. 12-28 Ma). Two of the 15 major clades delimited are described here as new subfamilies (i.e. Bullaregiinae n. subfam. and Pontobelgrandiellinae n. subfam.), whose members are restricted to subterranean waters. Our results are an important contribution to understanding how the fifth MEE has shaped evolution and patterns of biodiversity in continental aquatic systems. Given the high extinction risks faced by many hydrobiids today, they also emphasise the need to study the biodiversity of vulnerable ecosystems.

Agricultural fallows are the main driver of natural forest regeneration in Tanzania

Rates and drivers of natural forest regeneration are areas of uncertainty for policy, forest management and climate change mitigation. In this study, the rate of deforestation and the rate and drivers of natural regeneration are described for 56 million hectares of village land in Tanzania, a country undergoing rapid deforestation. To determine the regeneration and deforestation rates, remote sensing (RS) data for 500 randomly selected points were reviewed for a 34 year period from 1987 to 2021 using Google Earth Engine. Over this period, regeneration, involving a transition from forest to non-forest and back to forest was detected on 4.8% of village land (95% CI: 3.1%–7.1%), while 0.8% of land transitioned from non-forest to forest (95% CI: 0.2%–2.04%). 22% of village land was deforested (95% CI: 18.6%–26.1%), equivalent to a mean annual net loss of 0.35 million hectares of forest. Using a combination of RS data, field plots and structured interviews, the land cover change trajectories of 180 regenerating plots, in 10 sampling clusters, were assessed to identify regeneration drivers and assess biomass and tree species accumulation rates. Agricultural fallows are the regeneration driver in 47% of plots (95% CI: 39.8%–54.8%). Other common regeneration drivers include abandonment of cultivated areas for reasons apart from fallowing, conservation and post wood-extraction abandonment in 19% (95% CI: 13.9%–26%), 18.3% (95% CI: 13%–24.8%) and 12.8% (95% CI: 8.3%–18.6%) of plots, respectively. The mean carbon sequestration rate was 1.4 Mg C ha−1 y−1, equivalent to 4.3 Tg C y−1 (95% CI: 3.9–4.7 Tg C y−1) across the 3.15 million hectares of regenerating village land forest. The mean species accumulation rate was 1.08 species y−1 (95% CI: 1.0–1.2). Regeneration time, location and precipitation have the greatest influence on biomass and species richness. The study highlights the potential for natural regeneration to contribute to global and national climate and biodiversity goals and to sustainable, productive forest management. The importance of cooperation and policy-alignment between the forest, agriculture and land sectors are under-scored.

Blunting ROS/TRPML1 pathway protects AFB1-induced porcine intestinal epithelial cells apoptosis by restoring impaired autophagic flux

Aflatoxin B1 (AFB1) is a stable mycotoxin that contaminates animal feed on a large scale and causes severe damage to intestinal cells, induces inflammation and stimulates autophagy. Transient receptor potential mucolipin subfamily 1 (TRPML1) is a regulatory factor of autophagy, but the underlying mechanisms of TRPML1-mediated autophagy in AFB1 intestine toxicity remain elucidated. In the present study, AFB1 (0, 5, 10 μg/mL) was shown to reduce cell viability, increase reactive oxygen species (ROS) accumulation and apoptosis rate. Additionally, AFB1 caused structural damage to mitochondria and lysosomes and increased autophagosomes numbers. Furthermore, AFB1 promoted Ca2+ release by activating the TRPML1 channel, stimulated the expression of autophagy-related proteins, and induced autophagic flux blockade. Moreover, pharmacological inhibition of autophagosome formation by 3-methyladenine attenuated AFB1-induced apoptosis by downregulating the levels of TRPML1 and ROS, whereas blockade of autophagosome-lysosomal fusion by chloroquine alleviated AFB1-induced apoptosis by upregulating TRPML1 expression and exacerbating ROS accumulation. Intriguingly, blocking AFB1-induced autophagic flux generated ROS- and TRPML1-dependent cell death, as shown by the decreased apoptosis in the presence the free radical scavenger N-Acetyl-L-cysteine and the TRPML1 inhibitor ML-SI1. Overall, these results showed that AFB1 promoted apoptosis of IPEC-J2 cells by disrupting autophagic flux through activation of the ROS/TRPML1 pathway.

Species Abundance Distributions Patterns between Tiankeng Forests and Nearby Non-Tiankeng Forests in Southwest China

Identifying the species abundance distributions (SADs) in Tiankeng forests is crucial for restoring and managing degraded karst ecosystem, whereas previous studies rarely explored the differences and response of vegetation dynamics to environmental variations. The species composition and SADs of the inner and outer fringe areas of Tiankeng forest and nearby non-Tiankeng forest were compared in Southwest China. Six models were adopted to compare SADs of three habitats. Kolmogrov–Smirnov (K–S) test was selected to compare the discrepancy between the simulated and observed SAD patterns. The Akaike Information Criterion (AIC) test was adopted to compare the models, and the best model was indicated by the lowest AIC value. The results showed that (1) the species dispersal from the inside of Tiankeng forests to the nearby non-Tiankeng forests is limited, while species have unlimited dispersal from nearby non-Tiankeng forests to the inside of Tiankeng forests via the fringe of Tiankeng forests. (2) Species abundance, species rarity, richness, and species accumulation rate in the Tiankeng forests were significant in non-Tiankeng forests (p < 0.05), and most species in inner Tiankeng forests originated from nearby non-Tiankeng forests. (3) Based on the criterion of K-S values, all models have passed the K–S test (p > 0.05), which indicated that niche processes and neutral process worked together in the maintenance of community species diversity, the community in study area is a niche-neutral continuum. (4) Considered the lowest AIC value, the neutral (△mean AIC = 1.3) models performed better than the niche (△mean AIC = 22.7) models and statistical (△mean AIC = 2.7) in the Tiankeng forest, while the statistical models performed better than the niche and neutral models in the non-Tiankeng forests. The results suggested that the main driving force of Tiankeng forests is the neutral process. The negative terrain in Tiankeng restricted the species dispersal due to topographic constraints. However, the species dispersal from the nearby non-Tiankeng forests could promote the species succession in the inner Tiankeng. Therefore, we propose that nearby non-Tiankeng forests should be emphasized for protecting the biodiversity of Tiankeng forests.

Socioeconomic and environmental factors jointly shape beta diversity of woody species in eastern China

AbstractQuestionsIncreasingly, studies have demonstrated that not only environmental factors but also socioeconomic factors are important in determining species richness patterns. However, few studies have explored their effects on beta diversity. Here, we aimed to answer two questions based on woody species composition in a number of geographical administrative divisions: (1) how does beta diversity change with socioeconomic and environmental factors; and (2) what is the relative importance of socioeconomic and environmental factors in driving beta diversity of woody species?LocationEastern China.MethodsWe used abundance‐based beta diversity (Bray–Curtis) and species accumulation rate to quantify beta diversity of woody species of 20 counties in eastern China. Linear regression models were used to test the relationships between beta diversity and socioeconomic and environmental factors. The relative importance of socioeconomic and environmental factors in driving beta diversity was investigated using the variation partitioning method.ResultsWe found that elevation, annual precipitation, and location significantly affected species composition. Species accumulation rate increased significantly with Gross Domestic Product (GDP), GDP per capita and human population density, and decreased with forest cover, topographic and climatic heterogeneity. In addition, abundance‐based beta diversity increased significantly with human population density. Moreover, socioeconomic factors, topographic and climatic heterogeneity independently explained 25%, 15%, and 1% of abundance‐based beta diversity separately.ConclusionSocioeconomic factors may have significant effects on beta diversity patterns of woody plants. Our study highlights the urgent need to consider socioeconomic factors when exploring large‐scale biodiversity patterns in human‐dominated landscapes and formulating related forest management strategies.

Diversity and abundance of bees in the Chhattisgarh plains of Central India

Considering colour pan traps as an effective technique for monitoring bees, the present study was undertaken at the IGKV campus, Raipur in randomly selected plots with mixed vegetation. A total of 548 bees were collected from coloured pan traps belonging to 11 species and 6 genera. Our results indicate that most of the collected bees were from the family Halictidae (87.7%) with the most abundant genus Lasioglossum Curtis, 1833 (82.66%). It was observed that individual species displayed significant preferences for not only yellow pan traps, but also for white, blue, and neon green pan traps, respectively. White pan traps exhibited the highest rate of bee capture and species accumulation. White and yellow pan traps were moderately effective in capturing bees, while the red and grey pan traps were least effective. Similarly, the observed and extrapolated species richness was highest in blue and white pan traps followed by yellow and green pan traps, respectively. In the overall population of the bees recovered from the colour pan traps barely 4.92% of individuals were males. 14 species of bees were collected belonging to 8 genera through sweep net.

Camera trap placement for evaluating species richness, abundance, and activity

Information from camera traps is used for inferences on species presence, richness, abundance, demography, and activity. Camera trap placement design is likely to influence these parameter estimates. Herein we simultaneously generate and compare estimates obtained from camera traps (a) placed to optimize large carnivore captures and (b) random placement, to infer accuracy and biases for parameter estimates. Both setups recorded 25 species when same number of trail and random cameras (n = 31) were compared. However, species accumulation rate was faster with trail cameras. Relative abundance indices (RAI) from random cameras surrogated abundance estimated from capture-mark-recapture and distance sampling, while RAI were biased higher for carnivores from trail cameras. Group size of wild-ungulates obtained from both camera setups were comparable. Random cameras detected nocturnal activities of wild ungulates in contrast to mostly diurnal activities observed from trail cameras. Our results show that trail and random camera setup give similar estimates of species richness and group size, but differ for estimates of relative abundance and activity patterns. Therefore, inferences made from each of these camera trap designs on the above parameters need to be viewed within this context.

Historical biogeography of the Gondwanan freshwater genus Boeckella (Crustacea): Timing and modes of speciation in the Southern Hemisphere

AbstractAimWe investigated evolutionary relationships and biogeographical patterns within the genus Boeckella to evaluate (1) whether its current widespread distribution in the Southern Hemisphere is due to recent long‐distance dispersal or long‐term diversification; and (2) the age and origin of sub‐Antarctic and Antarctic Boeckella species, with particular focus on the most widely distributed species: Boeckella poppei.LocationSouth America, sub‐Antarctic islands, maritime Antarctica, continental Antarctica and Australasia.MethodsTo reconstruct phylogenetic patterns of Boeckella, we used molecular sequence data collected from 12 regions and applied Bayesian and Maximum Likelihood analyses using multiple loci. We also estimated divergence times and reconstructed ancestral ranges using two different models of species evolution.ResultsPhylogenetic analyses and divergence time estimates suggested that Boeckella originated on the Gondwanan supercontinent and initially split into two main clades during the late Cretaceous (ca. 80 Ma). The first clade diversified in Australasia, and the second clade is currently distributed in South America, various sub‐Antarctic islands and Antarctica. Dispersal from South America to the Kerguelen and Crozet archipelagos occurred during the Eocene/Oligocene (B. vallentini) and in the late Pliocene (B. brevicaudata), while South Georgia and the maritime Antarctic were likely colonized during the late Pleistocene (B. poppei).Main conclusionsBoeckella has a Gondwanan origin, with further diversifications after the physical separation of the continental landmasses. Extant populations of Boeckella from the Scotia Arc islands and Antarctic Peninsula originated from South America during the Pleistocene, suggesting that original Antarctic Gondwanan lineages did not survive repeated glacial cycles during the Quaternary ice ages. A continuous decline in the species accumulation rate is apparent within the genus as the early Eocene, suggesting that Boeckella diversification may have decreased due to progressive cooling throughout the Cenozoic era.

Species Abundance and Reaction Off-Rate Regulate Product Formation in Reactions Accelerated Using Isotachophoresis.

We present a model for second-order and pseudo-first-order reversible chemical reactions accelerated using peak-mode isotachophoresis (ITP). In such systems, ITP preconcentrates and co-locates the reactants between the leading and trailing electrolyte zones, and this significantly accelerates chemical reactions. Our model quantifies the effects of reaction rate constants and species abundance on product formation rate. We identify two key non-dimensional parameters, which are specific groupings of reaction rate constants, species concentrations, and influx rates. We then use a regular perturbation to study the effects of reverse reaction rate and relative species abundance (and relative rates of species accumulation) on production rate. We also use this perturbation method to derive an analytical expression for the quasi-steady-state production rate achievable by ITP. Our analytical models and numerical solutions are generally applicable to a wide range of systems, which use ITP to enhance reactions. The model is also an interesting case study of the complex coupling of electric field-driven species transport and reaction kinetics.

Color of Pan Trap Influences Sampling of Bees in Livestock Pasture Ecosystem.

Simple SummaryPollination is important for fertilization, setting fruits, seed development and the continuation of the life cycle of plants that eventually provide food for humans, livestock and wildlife. Agronomic practices, use of pesticides, lack of diverse flowering plant species, introduction of invasive plants, loss of habitat, climate change and disease have all led to the decline of important pollinator species. Decline of insect pollinators has increased the importance of accurately monitoring pollinator diversity and abundance over time. Sampling techniques using different color traps are used to sample bees and other insects, but their utility and effectiveness in different ecosystems still need to be determined. In this study, we examined four different colors of pan traps (blue, green, yellow, and purple) for their utility in sampling bees in a livestock pasture ecosystem consisting of native forage species. We analyzed the relative abundance, richness, similarity, and community assemblage patterns associated with aforementioned colors. We found that the blue color traps were the most attractive to bees and were effective for sampling bees in a livestock pasture ecosystem. Purple color traps were the second most effective, followed by yellow and green color traps.The decline in insect pollinators has increased the importance of accurately monitoring pollinator diversity and abundance over time. Sampling techniques include the use of passive insect traps such as pan traps, yet there is still discussion over their utility and effectiveness in different ecosystems. The objective was to examine four different colors of pan traps (blue, green, yellow, and purple) for their utility in sampling bees in native forages rotationally grazed by sheep and to compare the relative abundance, richness, similarity, and community assemblage patterns among the four trap colors. Most bees were from the Halictidae family (89%). The most abundant species were Lasioglossum imitatum (42.2%), Augochlorella aurata (8.3%), L. subviridatum (6.8), Agapostemon texanus (6.4), and L. birkmani (4.1%). Blue color traps exhibited the highest rates of bee capture and species accumulation. Purple and yellow colored traps were moderately effective in capturing bees, while the green color pan traps were least effective. Similarly, observed and extrapolated species richness was highest in blue trap, followed by purple, yellow, and green. Notably, the blue trap captured the highest number of unique species, followed by purple, yellow and green traps. Considering the total number of insects collected (including bees and other insects), yellow and green traps captured a significantly higher number of insects than other colored traps. The light reflectance from blue, purple, green and yellow pan traps had peaks at ~450, 400, 550, and 600 nm, respectively. Since different insects respond to different light intensities, wavelengths, and reflectivity, these results could be used to guide future trapping protocols targeting certain insect groups in livestock pasture and similar ecosystems.

Can sampling for vegetation characterisation surrogate for species richness? Case studies from the wet–dry tropics of northern Australia

Understanding the distribution of plant species and vegetation communities is important for effective conservation planning and ecosystem management, but many parts of the world remain under-surveyed. The Top End of Australia’s Northern Territory is vast, remote, and sparsely populated; knowledge of the flora, in many areas, is limited to common or dominant species. Here, we describe and contrast the benefits and trade-offs between two approaches to botanical survey – vegetation sampling (assessment of structural attributes and species composition, fundamentally for mapping purposes) and hybrid floristic survey (an intensive, inventory approach considering seasonality) – as applied in each of four remote areas of the Australian wet–dry monsoonal tropics. Hybrid floristic survey effectively doubled the species richness recorded within each study area, largely due to improved detections of forbs and sedges. Species-sampling effort relationships predicted hybrid floristic survey to consistently out-perform vegetation sampling in maximum species richness and rate of species accumulation. Although vegetation sampling offers an efficient means of circumscribing vegetation communities over large areas, hybrid floristic survey improved detection of seasonal species and, potentially, those of conservation concern. Strategic, proactive investment in hybrid floristic surveys may offer improved conservation outcomes and potential efficiency dividends in biodiversity conservation planning.

Contribution of Citizen Science to Biodiversity Data Mobilization in Russia

Currently Russia doesn't have a national biodiversity information system, and is still not a GBIF (Global Biodiversity Information Facility) member. Nevertheless, GBIF is the largest source of biodiversity data for Russia. As of August 2020, >5M species occurrences were available through the GBIF portal, of which 54% were published by Russian organisations. There are 107 institutions from Russia that have become GBIF publishers and 357 datasets have been published. The important trend of data mobilization in Russia is driven by the considerable contribution of citizen science. The most popular platform is iNaturalist. This year, the related GBIF dataset (Ueda 2020) became the largest one for Russia (793,049 species occurrences as of 2020-08-11). The first observation for Russia was posted in 2011, but iNaturalist started becoming popular in 2017. That year, 88 observers added >4500 observations that represented 1390 new species for Russia, 7- and 2-fold more respectively, than for the previous 6 years. Now we have nearly 12,000 observers, about 15,000 observed species and >1M research-grade observations. The ratio of observations for Tracheophyta, Chordata, and Arthropoda in Russia is different compared to the global scale. There are almost an equal amount of observations in the global iNaturalist GBIF dataset for these groups. At the same time in Russia, vascular plants make up 2/3rds of the observations. That is due to the "Flora of Russia" project, which attracted many professional botanists both as observers and experts. Thanks to their activity, Russia has a high proportion of research-grade observations in iNaturalist, 78% versus 60% globally. Another consequence of wide participation by professional researchers is the high rate of species accumulation. For some taxonomic groups conspicuous species were already revealed. There are about 850 bird species in Russia of which 398 species were observed in 2018, and only 83 new species in 2019. Currently, the number of new species recorded over time is decreasing despite the increase in observers and overall user activity. Russian iNaturalist observers have shared a lot of archive photos (taken during past years). In 2018, it was nearly 1/4 of the total number of observations and about 3/4 of new species for the year, with similar trends observed during 2019. Usually archive photos are posted from December until April, but the 2020 pandemic lockdown spurred a new wave of archive photo mobilisation in April and May. There are many iNaturalist projects for protected areas in Russia: 27 for strict nature reserves and national parks, and about 300 for others. About 100,000 observations (7.5% of all Russian observations) from the umbrella project "Protected areas of Russia" represent >34% of the species diversity observed in Russia. For some regions, e.g., Novosibirsk, Nizhniy Novgorod and Vladimir Oblasts, almost all protected areas are covered by iNaturalist projects, and are often their only source of available biodiversity data. There are also other popular citizen science platforms developed by Russian researchers. The first one is the Russian birdwatching network RU-BIRDS.RU. The related GBIF dataset (Ukolov et al. 2019) is the third largest dataset for Russia (>370,000 species occurrences). Another Russian citizen science system is wildlifemonitoring.ru, which includes thematic resources for different taxonomic groups of vertebrates. This is the crowd-sourced web-GIS maintained by the Siberian Environmental Center NGO in Novosibirsk. It is noteworthy that iNaturalist activities in Russia are developed more as a social network than as a way to attract volunteers to participate in scientific research. Of 746 citations in the iNaturalist dataset, only 18 articles include co-authors from Russia. iNaturalist data are used for the management of regional red lists (in the Republic of Bashkortostan, Novosibirsk Oblast and others), and as an additional information source for regional inventories. RU-BIRDS data were used in the European Russia Breeding Bird Atlas and the new edition of the European Breeding Bird Atlas. In Russia, citizen science activities significantly contribute to filling gaps in the global biodiversity map. However, Russian iNaturalist observations available through GBIF originate from the USA. It is not ideal, because the iNaturalist GBIF dataset is growing rapidly, and in the future it will represent more than all other datasets for Russia combined. In our opinion, iNaturalist data should be repatriated during the process of publishing through GBIF, as it is implemented for the eBird dataset (Levatich and Ligocki 2020).

Spatiotemporal Diversification of Tree Squirrels: Is the South American Invasion and Speciation Really That Recent and Fast?

Tree squirrels (Sciurinae, Sciurini) represent a diverse radiation that successfully colonized Europe, Asia and the Americas during the Miocene-Pliocene, but information on their evolutionary history remains unclear. In the Neotropics, they have been shown to exhibit the highest rate of diversification amongst all arboreal squirrels, with strikingly high species accumulation rates in the past 3 My. In this study, we investigated the tempo and mode of diversification of tree squirrels using a mitogenome dataset that includes 43 Sciurini species. Our results corroborate the date of origin of the tribe Sciurini around 14 Mya (13.4-15.5) but suggest that their ancestral area was most likely in North America. This is in contrast to previous findings that suggested that the ancestors of this tribe occupied Eurasia. We estimated that cladogenetic events leading to the Eurasian lineages occurred twice at 10.5 and 9.7 Mya. Current North American genera originated in a temporal window from 6.2 to 2.3 Mya, and the origin of the Neotropical radiation was estimated to have occurred around 6 Mya in northwestern South America in the Pacific dominion. Remarkably, our results indicate that tree squirrels entered South America at an earlier date than previously estimated. This could have happened either through a land corridor connecting the Caribbean islands or through the Panamanian land bridge. Most cladogenetic events in Eurasia and North America appear to have occurred either late in the Miocene or in the Pleistocene, while the majority of Neotropical cladogenetic events occurred along the Pliocene—right after the South American invasion. We found a fairly constant speciation rate for tree squirrels (averaging 0.29), which contrasts with the peak of lineage accumulation observed in the Pliocene. The absence of fluctuations in the diversification rate may be the result of several extinction events that were responsible for equalizing the number of lineages maintained over time. Finally, we conclude that the South American invasion was not as recent as previously inferred, but the diversification there was indeed very fast.

Systematics, biogeography, and diversification of Scytalopus tapaculos (Rhinocryptidae), an enigmatic radiation of Neotropical montane birds

Abstract We studied the phylogeny, biogeography, and diversification of suboscine passerines in the genus Scytalopus (Rhinocryptidae), a widespread, species-rich, and taxonomically challenging group of Neotropical birds. We analyzed nuclear (exons, regions flanking ultraconserved elements) and mitochondrial (ND2) DNA sequence data for a taxonomically and geographically comprehensive sample of specimens collected from Costa Rica to Patagonia and Brazil. We found that Scytalopus is a monophyletic group sister to Eugralla and consists of 3 main clades roughly distributed in (1) the Southern Andes, (2) eastern Brazil, and (3) the Tropical Andes and Central America. The clades from the Southern Andes and eastern Brazil are sister to each other. Despite their confusing uniformity in plumage coloration, body shape, and overall appearance, rates of species accumulation through time in Scytalopus since the origin of the clade in the Late Miocene are unusually high compared with those of other birds, suggesting rapid non-adaptive diversification in the group. We attribute this to their limited dispersal abilities making them speciation-prone and their occurrence in a complex landscape with numerous barriers promoting allopatric differentiation. Divergence times among species and downturns in species accumulation rates in recent times suggest that most speciation events in Scytalopus predate climatic oscillations of the Pleistocene. Our analyses identified various cases of strong genetic structure within species and lack of monophyly of taxa, flagging populations which likely merit additional study to clarify their taxonomic status. In particular, detailed analyses of species limits are due in S. parvirostris, S. latrans, S. speluncae, the S. atratus complex, and the Southern Andes clade.

Forest Landscape Heterogeneity Increases Shrub Diversity at the Expense of Tree Seedling Diversity in Temperate Mixedwood Forests

Partial disturbances enhance spatial heterogeneity through the diversification of forest structure, which contributes to niche partitioning and consequently to species diversity. However, this heterogeneity–diversity relationship may differ between groups of species, and is potentially modified by biotic interactions at the community level. We propose that shrub diversity will be greater in heterogeneous landscapes, while tree diversity will be lower in those same landscapes, due to the biotic interactions of shrub competition. We conducted field sampling in the balsam fir/yellow birch bioclimatic domain in western Québec, a forested ecosystem disturbed by natural and anthropogenic partial disturbances. We selected 12 forested landscapes (1 km2), four in each of three classes of landscape heterogeneity (heterogeneous, moderately heterogeneous, homogenous). Shrub and tree species regeneration abundance was measured in three different size classes of canopy gaps and the forest understory. Gap proportions were assessed in each landscape using aerial LiDAR data. Tree and shrub alpha-diversity significantly responded to landscape heterogeneity, shrubs being more diverse while tree seedlings were less diverse in heterogeneous landscapes. Heterogeneous landscapes showed highest species accumulation rates for shrubs in medium-sized gaps. For tree seedlings, species accumulation rates were highest in heterogeneous landscapes in the forest understory. Our study thus supports the heterogeneity–diversity relationship with shrubs having higher alpha and beta diversity in heterogeneous landscapes whereas local-scale tree diversity was higher in homogenous landscapes.

Monitoring insect pollinators and flower visitation: The effectiveness and feasibility of different survey methods

Abstract The status of pollinating insects is of international concern, but knowledge of the magnitude and extent of declines is limited by a lack of systematic monitoring. Standardized protocols are urgently needed, alongside a better understanding of how different methods and recorders (data collectors) influence estimates of pollinator abundance and diversity. We compared two common methods for sampling wild pollinating insects (solitary bees, bumblebees and hoverflies), pan traps and transects, in surveys of 1 km countryside squares (agricultural and semi‐natural habitats) and flowering crop fields across Great Britain, including the influence of local floral resources (nectar sugar availability or crop flower density) on the insects sampled. Further, we compared the performance of recorders with differing expertise (non‐specialist research staff, taxonomic experts and non‐expert volunteers) in applying methods. Pan traps and transects produced compositionally distinct samples of pollinator communities. In the wider countryside, pan traps sampled more species of solitary bee and hoverfly. In flowering crops, transects recorded a greater number of individual bumblebees, but fewer species. Across all taxonomic groups and countryside and crop samples, transects generally had lower rates of species accumulation per individual collected than pan traps. This demonstrates that differences between methods in estimating richness are not due to sampling effort alone. However, recorders possessing greater taxonomic expertise can produce species accumulation data from transects that are almost commensurate with pan trapping. The abundance and species richness of pollinators (except solitary bees) on transects in the wider countryside was positively related to the availability of estimated nectar sugar. In crops, pollinator abundance responses to flower densities were idiosyncratic according to crop type, but overall the response was positive and negative for transects and pan traps, respectively. Given these taxonomic and context‐specific differences in method performance, we assess their suitability for monitoring pollinating insect communities and pollination services. We discuss the relevance of these findings within the context of achieving standardized, large‐scale monitoring of pollinating insects.

A Minimal Model for the Latitudinal Diversity Gradient Suggests a Dominant Role for Ecological Limits.

The latitudinal diversity gradient (LDG) is one of Earth's most iconic biodiversity patterns and still one of the most debated. Explanations for the LDG are often categorized into three broad pathways in which the diversity gradient is created by (1) differential diversification rates, (2) differential carrying capacities (ecological limits), or (3) differential time to accumulate species across latitude. Support for these pathways has, however, been mostly verbally expressed. Here, we present a minimal model to clarify the essential assumptions of the three pathways and explore the sensitivity of diversity dynamics to these pathways. We find that an LDG arises most easily from a gradient in ecological limits compared with a gradient in the time for species accumulation or diversification rate in most modeled scenarios. Differential diversification rates create a stronger LDG than ecological limits only when speciation and dispersal rates are low, but then the predicted LDG seems weaker than the observed LDG. Moreover, range dynamics may reduce an LDG created by a gradient in diversification rates or time for species accumulation, but they cannot reduce an LDG induced by differential ecological limits. We conclude that our simple model provides a null prediction for the effectiveness of the three LDG pathways and can thus aid discussions about the causal mechanisms underlying the LDG or motivate more complex models to confirm or falsify our findings.

Diversity loss in grasslands due to the increasing dominance of alien and native competitive herbs

The increasing dominance of competitive plant species may reduce species richness of plant communities. Yet, species richness may depend on spatial scale and the alien versus native status of the dominant species. To explore the dominance effects of alien versus native species on species richness, we sampled semi-natural grasslands in southwestern Poland. We established 100 m2 squares at different grassland sites, and in two opposite corners we placed two series of five nested plots (0.001, 0.01, 0.1, 1 and 10 m2), in which we recorded all vascular plant species. Next, we selected squares with a strongly dominant plant in one corner (high-dominance series) and with no strong dominant in the opposite corner (low-dominance series). The number of species per plot and the slopes of the species–area curves fitted to each nested-plot series were used to assess whether the alien vs. native status of the dominant species influences species-richness pattern across scales. We found a significantly lower number of species in the high-dominance series than in the low-dominance series, regardless of the alien versus native status of the dominant species. The slopes of the species–area curves indicated that the rate of species accumulation with increasing area was faster in the high-dominance series than in the low-dominance series; however, this pattern did not depend on the alien vs. native status of the dominants. Our study confirms that increasing dominance is linked to a decline in species richness, but reveals that alien dominants do not have a stronger impact than native dominants.