With the intensification of global climate change, extreme rainfall events are occurring more frequently. Continuous rainfall causes the debris flow gully to collect a large amount of rainwater. Under the continuous increase in the water level, the water flow has enough power to carry plenty of loose solids, thus causing debris flow disasters. The intensity of the soil is reduced with the infiltration of rainwater, which is one of the key causes of the disaster. The rise in the water level affects the infiltration behavior. There have been few previous studies on infiltration under variable head. In order to understand the infiltration behavior of soils under the action of water level rises, this paper conducted an indoor permeability test on non-cohesive soil under the condition of an increasing water level. A numerical model was established using the finite element analysis software, Abaqus 6.14, and the pore pressure was increased intermittently to simulate the intermittent increase in the water level. Thereafter, the permeability coefficient and seepage length were changed to interpret the changes in the flow velocity and rate in the permeability test of the non-cohesive soil. The results showed that the finite element numerical simulation method could not reflect the particle movement process in the soil. The test could better reflect the through passage and void plugging phenomenon in soil; when the permeability coefficient alone changed, the velocity of the measuring point with higher velocity changed more violently with the permeability coefficient; when the length of soil seepage diameter was uniformly shortened, the velocity of water flow increased faster and faster.