This study investigates the thermal behaviour of a fully wet, moving semi-spherical porous fin made of linear Functionally Graded Material (FGM). This investigation examines the fin response to convective-radiative heat transfer under periodic variations in base temperature across three different FGM scenarios: Homogeneous material (HM), Functionally Graded Material I (FGM I) and Functionally Graded Material II (FGM II). The resultant nonlinear partial differential equation is accurately solved using the Finite Difference Method (FDM) and outcomes are benchmarked against existing literature. This research pioneers an investigation into the effects of periodic heat transfer on the detailed thermal profiles of FGM fin, an area not been explored in existing literature. It significantly enhances understanding of the influence of oscillatory base temperatures on thermal management within FGMs, uncovering pivotal insights into the interaction between material grading, amplitude of temperature oscillation and their collective effects on thermal efficiency. Additionally, this research assesses the influence of variables such as the amplitude of input temperature, frequency of oscillation, thermal conductivity grading parameter and others on temperature distribution along the fin length and over dimensionless time. Notably, periodic heat transfer induces a dynamically wavy thermal profile in the fin over time, attributable to oscillating base temperatures. Moreover, the analysis demonstrates that FGM II fin exhibit the most significant temperature distribution, followed by FGM I and HM. The fin heat transfer rate is profoundly influenced by the amplitude of input temperature and the thermal conductivity grading parameter. These insights are pivotal for optimizing fin designs in critical applications, including electronics cooling, HVAC systems, automotive engine cooling and solar energy collection, substantially improving upon traditional designs.