As a medicinal plant with high economic value, the green and efficient separation of the main components (essential oil (EO) and flavonoids) from Thymus vulgaris L. can enhance its application prospects. The present study developed a polyethylene glycol-ultrasonic pretreatment followed by microwave hydrodistillation and extraction (PEG-U-MHDE) technique to distill EO and extract flavonoids simultaneously. The parameters involved in the PEG-ultrasonic pretreatment and microwave irradiation processes were investigated using single factor and BBD experiments, from which 25 % PEG200/400/600 (1:1:1, v/v/v) was found to have the highest extraction ability. Under the optimal conditions, the yield of EO, apigenin, and baicalein was 3.72 ± 0.15 μL/g, 0.76 ± 0.03 mg/g, and 0.96 ± 0.03 mg/g, respectively. The PEG-U-MHDE showed good stability, recovery, and repeatability for apigenin and baicalein. In addition, the separation efficiency of EO, apigenin, and baicalein obtained by PEG-U-MHDE was 0.19 μL/g/min, 37.85 μg/g/min, and 48.03 μg/g/min, respectively, and the EO contained 81.77 % oxygenated compounds, which were higher than other reference methods. The inhibition rate of EO (concentration of 0.5 μL/mL) against the agricultural pathogenic fungus (Fusarium graminearum) was 36.65 ± 1.28 %, which was speculated to be closely related to its main oxygenated compounds (thymol and carvacrol). In general, PEG-U-MHDE has the advantages of short time and high efficiency, and can realize the simultaneous separation of volatile EO and non-volatile components, which provides a theoretical basis for the comprehensive utilization of natural medicinal plants and crops.
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