Quantum Yield Of Reaction Research Articles

Synthesis and Development of Inverse-Type Nucleoside Diarylethene Photoswitches.

Nucleosidic diarylethenes (DAEs) have evolved from an emerging class of photochromes into a well-established option for integrating photochromic functionalities into biological systems. However, a comprehensive understanding of how chemical structure influences their photochromic properties remains essential. While structural features, such as an inverse connection between the aryl residues and the ethene bridge, are well-documented for classical DAEs, their application to nucleosidic DAEs has been underexplored. In this study, we address this gap by developing three distinct types of inverse nucleosidic DAEs-semi-inverse thiophenes, semi-inverse uridines and inverse uridines. We successfully synthesized these compounds and conducted comprehensive analyses of their photostationary states, thermal stability, reversibility, and reaction quantum yields. Additionally, we conducted an in-depth comparison of their photochromic properties with those of their normal-type counterparts. Among the synthesized compounds, seven semi-inverse thiophenes exhibited the most promising characteristics. Notably, these compounds demonstrated excellent fatigue resistance, with up to 96 % retention of photochromic activity over 40 switching cycles, surpassing the performance of all comparable nucleosidic DAEs reported to date. These findings hold significant promise for future applications in various fields.

Stomatal and Non-Stomatal Leaf Responses during Two Sequential Water Stress Cycles in Young Coffea canephora Plants

Understanding the dynamics of physiological changes involved in the acclimation responses of plants after their exposure to repeated cycles of water stress is crucial to selecting resilient genotypes for regions with recurrent drought episodes. Under such background, we tried to respond to questions as: (1) Are there differences in the stomatal-related and non-stomatal responses during water stress cycles in different clones of Coffea canephora Pierre ex A. Froehner? (2) Do these C. canephora clones show a different response in each of the two sequential water stress events? (3) Is one previous drought stress event sufficient to induce a kind of “memory” in C. canephora? Seven-month-old plants of two clones (’3V’ and ‘A1’, previously characterized as deeper and lesser deep root growth, respectively) were maintained well-watered (WW) or fully withholding the irrigation, inducing soil water stress (WS) until the soil matric water potential (Ψmsoil) reached ≅ −0.5 MPa (−500 kPa) at a soil depth of 500 mm. Two sequential drought events (drought-1 and drought-2) attained this Ψmsoil after 19 days and were followed by soil rewatering until a complete recovery of leaf net CO2 assimilation rate (Anet) during the recovery-1 and recovery-2 events. The leaf gas exchange, chlorophyll a fluorescence, and leaf reflectance parameters were measured in six-day frequency, while the leaf anatomy was examined only at the end of the second drought cycle. In both drought events, the WS plants showed reduction in stomatal conductance and leaf transpiration. The reduction in internal CO2 diffusion was observed in the second drought cycle, expressed by increased thickness of spongy parenchyma in both clones. Those stomatal and anatomical traits impacted decreasing the Anet in both drought events. The ‘3V’ was less influenced by water stress than the ‘A1’ genotype in Anet, effective quantum yield in PSII photochemistry, photochemical quenching, linear electron transport rate, and photochemical reflectance index during the drought-1, but during the drought-2 event such an advantage disappeared. Such physiological genotype differences were supported by the medium xylem vessel area diminished only in ‘3V’ under WS. In both drought cycles, the recovery of all observed stomatal and non-stomatal responses was usually complete after 12 days of rewatering. The absence of photochemical impacts, namely in the maximum quantum yield of primary photochemical reactions, photosynthetic performance index, and density of reaction centers capable of QA reduction during the drought-2 event, might result from an acclimation response of the clones to WS. In the second drought cycle, the plants showed some improved responses to stress, suggesting “memory” effects as drought acclimation at a recurrent drought.

Efficient Energy and Electron Transfer Photocatalysis with a Coulombic Dyad.

Photocatalysis holds great promise for changing the way value-added molecules are currently prepared. However, many photocatalytic reactions suffer from quantum yields well below 10%, hampering the transition from lab-scale reactions to large-scale or even industrial applications. Molecular dyads can be designed such that the beneficial properties of inorganic and organic chromophores are combined, resulting in milder reaction conditions and improved reaction quantum yields of photocatalytic reactions. We have developed a novel approach for obtaining the advantages of molecular dyads without the time- and resource-consuming synthesis of these tailored photocatalysts. Simply by mixing a cationic ruthenium complex with an anionic pyrene derivative in water a salt bichromophore is produced owing to electrostatic interactions. The long-lived organic triplet state is obtained by static and quantitative energy transfer from the preorganized ruthenium complex. We exploited this so-called Coulombic dyad for energy transfer catalysis with similar reactivity and even higher photostability compared to a molecular dyad and reference photosensitizers in several photooxygenations. In addition, it was shown that this system can also be used to maximize the quantum yield of photoredox reactions. This is due to an intrinsically higher cage escape quantum yield after photoinduced electron transfer for purely organic compounds compared to heavy atom-containing molecules. The combination of laboratory-scale as well as mechanistic irradiation experiments with detailed spectroscopic investigations provided deep mechanistic insights into this easy-to-use photocatalyst class.

Photochemistry of N-aryl and N-alkyl dibenzothiophene sulfoximines.

N-phenyl dibenzothiophene sulfoximine has been demonstrated to produce phenyl nitrene and dibenzothiophene S-oxide upon irradiation with UV-A light, and dibenzothiophene S-oxide upon further irradiation releases triplet atomic oxygen. Thus, N-phenyl dibenzothiophene sulfoximine exhibits a rare dual-release capability in its photochemistry. In this work, N-substituted dibenzothiophene sulfoximine derivatives are irradiated with UV-A light to compare their photochemistry and quantum yield of dibenzothiophene S-oxide production with that of N-phenyl dibenzothiophene sulfoximine. Both N-aryl and N-alkyl derivatives of dibenzothiophene sulfoximine are examined to observe their effects on the quantum yield of the photolysis reaction. Adding electron withdrawing N-aryl substituents is shown to increase the quantum yield of dibenzothiophene S-oxide production, while adding electron donating N-aryl substituents is shown to decrease the quantum yield. The quantum yield was slightly lowered or not increased by most N-alkyl substituents. Furthermore, the quantum yield was not augmented by branching and steric hindrance effects associated with the N-alkyl substituents. These results suggest that electronic modulation of the sulfoximine bonds affects the observed photolysis reaction.

Algal consortia as the flexible bio-system for wastewater treatment: Effect of different light intensities on photosynthetic performance, anti-oxidative system and biodiesel production of consortia

Competence of microalgae consortia-1 (Chlorococcum humicola and Tetradesmus sp.) and consortia-2 (Chlorococcum humicola, Scenedesmus vacuolatus and Tetradesmus sp.) was analyzed by examining their adaptability potential in wastewater under different light intensities (20 W/m2 and 40 W/m2). The results depicted highest decline in nutrients and metal concentration (40–90%) at light intensity of 40 W/m2 by consortia-1 and consortia-2 treated with wastewater (50%, 100%). The result of metal remediation was further confirmed by fourier transform infrared spectroscopy (FTIR) which reflected occurrence of different functional groups in selected consortia. Moreover, light intensity of 40 W/m2 induced neutral-lipid accumulation (1750 cm−1) in consortia-1 as depicted in FTIR spectra. The maximum active photosystem-II reaction center (79.75%), quantum yield (26.17%) and performance index (195.8%) revealed that light intensity (40 W/m2) and wastewater augmented functioning of photosystem-II in consortia-1 than consortia-2. Further, consortia-2 appeared more sensitive to oxidative stress as the concentration of oxidative stress markers (5.73–6.39 folds) was amplified after treatment with wastewater at light intensity of 40 W/m2. The prodigious tolerance potential towards different light intensities and wastewater concentration of consortia-1 may be attributed to increased activity of ascorbic acid (1.16 folds), proline (1.32 folds), cysteine (2.80 folds), superoxide dismutase (3.44 folds), catalase (2.52 folds) and glutathione reductase (1.90 folds). However, abundance of saturated fatty acid (41.34%) together with high cetane number (59.07) indicated that consortia 2 can produce excellent quality biofuel at 20 W/m2 while consortia-2 at 40 W/m2. Overall, consortia 1 appeared competent in terms of photosynthetic performance, remediation efficiency and antioxidant defense mechanism under 20 W/m2 and 40 W/m2 while consortia-2 showed quality biodiesel production at 20 W/m2. Thus, algal consortia based on photosynthetic performance and defense responses along with excellent biodiesel quality under different light intensity and wastewater concentration can serve as the promising biosystem for biomass and bioenergy production.

Study on factors affecting quantum yield for the design of improved ortho-nitrobenzyl photoremovable protecting groups

Abstract The use of photoremovable protecting groups (PPGs) for the protection and deprotection of biologically active substances has become instrumental in elucidating functional mechanisms in cells. However, the development of chromophores responsive to visible and near-infrared (NIR) light often results in reduced quantum yields (Φu) of uncaging reactions. Because a high quantum yield is essential for practical PPGs, it is imperative to understand the factors influencing it and devise strategies to enhance it. In this study, we systematically investigated nitrobiphenyl scaffolds featuring amino substituents as electron donors, potentially serving as visible and NIR excitable chromophores. Among the synthesized structures, PPGs incorporating carbazole and phenothiazine units as amino substituents exhibited the highest Φu values of 0.2 and 0.1, respectively, rendering them promising candidates for physiological studies. Conversely, diphenylamine substituents yielded considerably lower Φu values. Photophysical properties and quantum chemical calculations provided insights into the nature of the lowest excited states and their impact on Φu, highlighting the significance of achieving the balance between local n–π* excitation and charge-transfer excitation for manipulating the uncaging quantum yield in ortho-nitrobenzyl derivatives.

COELENTERAZINE-DEPENDENT LUCIFERASES: PROPERTIES AND APPLICATION

The review presents data on the structure of bioluminescent systems of marine animals that use coelenterazine-dependent luciferases as light-emitting proteins. It has been shown that due to the availability, stability and high quantum yield of reactions, these luciferases, as well as their genetic variants with new useful properties, are successfully applied as reporter molecules in a variety of analytical systems in vitro and in vivo. Their use provides high sensitivity, simple design and fast analysis.

Photodecarboxylative Ring Annulation of α‐ and β‐Functionalized Phthaloyl‐GABA Derivatives: Bioactive Pyrroloisoindolinones with High Quantum Efficiency

AbstractThe triplet‐sensitized (by the solvent acetone) as well as the direct (λex=300–320 nm) photochemical decarboxylation of N‐phthaloylated γ‐aminobutyric acid (GABA) derivatives are versatile and high‐yielding routes to benzopyrrolizidines via intramolecular electron transfer initiated decarboxylation followed by radical coupling. The ß‐mono‐ and ß,ß'‐disubstituted N‐phthaloyl GABA derivatives 7 a–7 g, respectively, were applied as substrates. Decarboxylative photocyclization yielded hydroxy benzopyrrolizidines 8 a–8 g in high chemical yields and with moderate diastereoselectivities from the ß‐monosubstituted substrates. The analogous α‐substituted GABA derivatives 11 a–11 c were also applied as potential substrates for memory of chirality effects. The reaction quantum yields of the photodecarboxylation reactions for the parent GABA derivative 13 and for the new substrates 7 h and 11 a were determined by the quantum yield determination system (QYDS) and showed a remarkable concentration dependency indicating aggregation at higher substrate concentrations. Inhibition studies on the atherogenic human serine hydrolase cholesterol esterase showed derivatives 8 a and 8 d to exhibit a hyperbolic mode of inhibition with moderate IC50 values of about 60–80 μM.

Formylation boosts the performance of light-driven overcrowded alkene-derived rotary molecular motors.

Artificial molecular motors and machines constitute a critical element in the transition from individual molecular motion to the creation of collective dynamic molecular systems and responsive materials. The design of artificial light-driven molecular motors operating with high efficiency and selectivity constitutes an ongoing fundamental challenge. Here we present a highly versatile synthetic approach based on Rieche formylation that boosts the quantum yield of the forward photoisomerization reaction while reaching near-perfect selectivity in the steps involved in the unidirectional rotary cycle and drastically reducing competing photoreactions. This motor is readily accessible in its enantiopure form and operates with nearly quantitative photoconversions. It can easily be functionalized further and outperforms its direct predecessor as a reconfigurable chiral dopant in cholesteric liquid crystal materials.

Photodecarboxylation of ketoprofen studied by transient absorption spectroscopy and transient grating method: Estimation of the partial molar volume of carbon dioxide

The photoreaction of ketoprofen, a widely used nonsteroidal anti-inflammatory drug (NSAID), was intensively investigated in methanol by transient absorption spectroscopy and transient grating (TG) method. From quantitative analyses of the transient absorption and of the TG signal due to CO2, we successfully determined the partial molar volume of CO2 to be 46 ± 2 cm3 mol−1. With the partial molar volume of CO2 obtained in this work, the reaction quantum yield of photodecarboxylation of other NSAIDs can be estimated from only the TG signal. The approach with the TG method would be a new tool for evaluating photoreactivity of NSAIDs.

Cage escape governs photoredox reaction rates and quantum yields

Photoredox catalysis relies on light-induced electron transfer leading to a radical pair comprising an oxidized donor and a reduced acceptor in a solvent cage. For productive onward reaction to occur, the oxidized donor and the reduced acceptor must escape from that solvent cage before they undergo spontaneous reverse electron transfer. Here we show the decisive role that cage escape plays in three benchmark photocatalytic reactions, namely, an aerobic hydroxylation, a reductive debromination and an aza-Henry reaction. Using ruthenium(II)- and chromium(III)-based photocatalysts, which provide inherently different cage escape quantum yields, we determined quantitative correlations between the rates of photoredox product formation and the cage escape quantum yields. These findings can be largely rationalized within the framework of Marcus theory for electron transfer.

Spectroscopic view on the interaction between the psoralen derivative amotosalen and DNA

Psoralens are eponymous for PUVA (psoralen plus UV-A radiation) therapy, which inter alia can be used to treat various skin diseases. Based on the same underlying mechanism of action, the synthetic psoralen amotosalen (AMO) is utilized in the pathogen reduction technology of the INTERCEPT® Blood System to inactivate pathogens in plasma and platelet components. The photophysical behavior of AMO in the absence of DNA is remarkably similar to that of the recently studied psoralen 4′-aminomethyl-4,5′,8-trimethylpsoralen (AMT). By means of steady-state and time-resolved spectroscopy, intercalation and photochemistry of AMO and synthetic DNA were studied. AMO intercalates with a higher affinity into A,T-only DNA (KD = 8.9 × 10−5 M) than into G,C-only DNA (KD = 6.9 × 10−4 M). AMO covalently photobinds to A,T-only DNA with a reaction quantum yield of ΦR = 0.11. Like AMT, it does not photoreact following intercalation into G,C-only DNA. Femto- and nanosecond transient absorption spectroscopy reveals the characteristic pattern of photobinding to A,T-only DNA. For AMO and G,C-only DNA, signatures of a photoinduced electron transfer are recorded.Graphical abstract

Detection of photoreversibility of NO<sub>2</sub>–ONO linkage isomerization in [Co(NH<sub>3</sub>)<sub>5</sub>NO<sub>2</sub>]Cl(NO<sub>3</sub> crystals by the photomechanical response method

Linkage isomerization NO2-ONO (nitro-nitrito) in the complex cation [Co(NH3)5NO2]2+ is a well-studied classical reaction. It is believed that the photoisomerization of the nitro form to nitrito in the crystalline phase achieves complete transformation at low temperature, while the reverse transformation proceeds as a first-order thermal intramolecular reaction upon heating of the crystals. To date, there is no information about the possibility of reverse photoisomerization. In this work, photoisomerization in [Co(NH3)5NO2]Cl(NO3) crystals is investigated by the analysis of crystal deformation caused by the transformation at different wavelengths. A change in the lattice parameters during the transformation leads to reliably measurable elongation and bending of acicular crystals. It is shown that the limiting elongation of the crystal under prolonged irradiation depends on the wavelength, which proves the reversibility of photoisomerization. The quantum yield of the reverse reaction is estimated to be 0.04 of the quantum yield of the direct reaction.

Determining the quantum yield of photochemical reactions in crystals from simultaneous effects of photothermal and photochemical bending of needle-shaped crystals.

Photoinduced bending of needle crystals caused by photochemical transformation can be used as an extremely sensitive method for studying the kinetics of the transformation. However, the determination of the absolute value of the quantum yield of the reaction requires an accurate value of the intensity of light penetrating the crystal, in contrast to reactions in solutions where only the value of the total absorbed irradiation dose is sufficient. To address this problem, this study utilizes the effect of photothermal bending of a crystal due to its heating by light, occurring simultaneously with the bending due to transformation and proportional to the same value of light intensity. The ratio of the amplitudes of the two effects is independent of the light intensity, which allows the quantum yield to be determined without knowledge of the intensity value. In addition, the method allows the light intensity and thermal conductivity of the crystal to be estimated. The method is applied to measure wavelength dependence of the quantum yield of nitro-to-nitrito photoisomerization in [Co(NH3)5NO2]Cl(NO3) crystals. A monotonically decreasing value of the quantum yield φ from 0.19 to 0.04 in the range of λ from 403 to 523 nm was obtained. This result indicates the qualitative differences in the transformation mechanism in crystals and in solutions, where φ = 0.03 independent of λ in the same wavelength range.

Absolute control over the quantum yield of a photodissociation reaction mediated by nonadiabatic couplings.

Control of molecular reaction dynamics with laser pulses has been developed in the last decades. Among the different magnitudes whose control has been actively pursued, the branching ratio between different product channels constitutes the clearest signature of quantum control. In polyatomic molecules, the dynamics in the excited state is quagmired by non-adiabatic couplings, which are not directly affected by the laser, making control over the branching ratio a very demanding challenge. Here we present a control scheme for the CH3I photodissociation in the A band, that modifies the quantum yield of the two fragmentation channels of the process. The scheme relies on the optimized preparation of an initial superposition of vibrational states in the ground potential, which further interfere upon the excitation with a broad pump pulse. This interference can suppress any of the channels, regardless of its dominance, and can be achieved over the whole spectral range of the A band. Furthermore, it can be accomplished without strong fields or direct intervention during the dynamics in the excited states: the whole control is predetermined from the outset. The present work thus opens the possibility of extensive and universal control of the channel branching ratio in complex photodissociation processes.

Internal Heavy-Atom Effect on Visible-Light-Induced Cyclization Reaction in Diarylethene-Perylenebisimide Dyads.

All-visible-light switchable diarylethene-perylenebisimide (DAE-PBI) dyads having bromine heavy atoms in the molecule were designed and synthesized. Very recently, we found a unique visible-light-induced cyclization reaction in a DAE-PBI dyad. The dyad exhibited reversible cyclization and cycloreversion reactions upon alternate irradiation with green (500-550 nm) and red (>600 nm) light. From the experimental results, it was suggested that the triplet state of DAE unit was generated via multiplicity conversion based on intramolecular energy transfer from the singlet excited state of PBI unit and that the cyclization reaction of DAE unit proceeded from the triplet state. In addition, it was revealed that the reactivity remarkably increased in a solvent containing heavy atoms such as carbon tetrachloride and iodoethane (i.e., external heavy-atom effect). Based on such results, in this study, we attempted to design and synthesize novel DAE-PBI dyads introducing bromine heavy atoms at different positions in the molecule. The synthesized dyads exhibited higher quantum yields of photocyclization reaction under visible-light irradiation even in a heavy-atom-free solvent compared to the previous dyad having no heavy atoms. The magnitude of enhancement well correlated to the contribution ratio of atomic orbital of bromine to the molecular orbital in LUMOs. These results indicated that the internal heavy atom effectively contributed to the visible-light-induced cyclization reaction in DAE-PBI dyads. Such an internal heavy-atom effect will pave the way for new molecular design to develop all-visible-light-activatable molecular switches.

Steric effect on the photoreaction of chromium(III) porphyrin complexes with imidazole ligands

The steric effect in the photoreaction and ligand substitution reaction of axially coordinated imidazole ligands in chromium(III) porphyrin complexes was investigated in toluene. Imidazole ligands that have various alkyl substituents at the carbon atom [Formula: see text] to the coordinating nitrogen atom were used. The quantum yield of the photodissociation reaction of the axial imidazole ligand shows a remarkable steric effect. Reflecting the steric bulkiness, the magnitude of the quantum yield is isopropyl > ethyl > methyl > (H). The steric effect also appears in the thermal ligand substitution reactions. The mechanism of the steric effect on reactivity will be discussed in terms of the steric hindrance between the porphyrin ligand and the alkyl substituents of imidazole.

Effect of Protonation on the Spectral–Luminescent and Photochemical Properties of a Bis(styrylbenzoquinoline) Dyad with the Naphthylene Framework and of Corresponding Dibenzoquinolylcyclobutane

The photophysical and photochemical properties of the protonated forms of both covalently bound biphotochromic dyad D44N containing two styrylbenzo[f]quinoline (SBQ) photochromes and corresponding cyclobutane CB44N containing two benzo[f]quinoline (BQ) substituents have been studied. CB44N is formed from D44N as a result of a reversible [2+2] photocycloaddition (PCA) reaction. The dyad and cyclobutane contain the 3-hydroxy-2-naphthoic acid (NA) moiety as a bridging group. It has been shown that the protonation of nitrogen atoms in the SBQ and BQ groups leads to bathochromic shifts in the absorption spectra and bathofloral shifts in the fluorescence spectra of the dyad and cyclobutane. In the protonated dyad, the quantum yield of the PCA reaction decreases, presumably due to the Coulomb repulsion, which prevents the cations of the protonated SBQ photochromes from approaching each other. In protonated cyclobutane, the quantum yield of the reverse four-membered ring opening reaction (retro-PCA), on the contrary, increases due to the absence of a competitive process of energy transfer from BQ to NA, which was previously observed in neutral cyclobutane

Role of hydrogen-bond networks on the donor side of photosynthetic reaction centers from purple bacteria.

For the last decades, significant progress has been made in studying the biological functions of H-bond networks in membrane proteins, proton transporters, receptors, and photosynthetic reaction centers. Increasing availability of the X-ray crystal and cryo-electron microscopy structures of photosynthetic complexes resolved with high atomic resolution provides a platform for their comparative analysis. It allows identifying structural factors that are ensuring the high quantum yield of the photochemical reactions and are responsible for the stability of the membrane complexes. The H-bond networks are known to be responsible for proton transport associated with electron transfer from the primary to the secondary quinone as well as in the processes of water oxidation in photosystem II. Participation of such networks in reactions proceeding on the periplasmic side of bacterial photosynthetic reaction centers is less studied. This review summarizes the current understanding of the role of H-bond networks on the donor side of photosynthetic reaction centers from purple bacteria. It is discussed that the networks may be involved in providing close association with mobile electron carriers, in light-induced proton transport, in regulation of the redox properties of bacteriochlorophyll cofactors, and in stabilization of the membrane protein structure at the interface of membrane and soluble phases.

Biochemical reactions remote-sensitized by excitons propagating across macroscopic distances along biological fibers: Isomerization of 11-cis-retinal

Presently we report a second example of a biochemical reaction sensitized remotely by excitons (electronic excited states) efficiently transferred along intermediate filaments (IFs) over macroscopic distances. IFs are excellent conductors of energy in the form of excitons, with the efficiency of ca. 0.53 reported in vitro. Excitons were generated by visible light and propagated along Müller cell (MC) intermediate filaments, about 100 μm long. These experiments used a capillary matrix filled by MC IFs extracted from porcine retina. Excitons induced efficient isomerization of 11-cis- to all-trans-retinal, with the reaction quantum yield φcis/trans = 0.347 obtained for 11-cis-retinal concentration of 1.0 × 10−3 M (0.284 g/L) using 546 nm light at 6.87 mW/cm2 power density. Exciton quantum yield φexc at 546 nm was also measured in function of radiation power density, with nonlinearity indicative of biphotonic processes. This is the first case of biphotonic processes occurring at such low light intensities with steady-state illumination. The present results support quantum mechanism of high-contrast vision of vertebrate eyes.