Generally, karst aquifers and springs are highly susceptible to contamination due to the high permeability and, therefore, groundwater flow velocities. The often thin soil cover, accompanied by dolines, can lead to fast infiltration of precipitation water loaded with mobilized contaminants such as pesticides and their transformation products. To date, continuous, temporally highly resolved in-situ monitoring to decipher concentration dynamics for a broad range of pesticides is missing. Therefore, a transportable HPLC-HRMS/MS system (MS2field) was positioned at two karst study sites in the Swiss Jura. Water samples were collected and analyzed for pesticides and their transformation products in-situ every 20 min for 6 weeks in 2021 and 8 weeks in 2022. During the spraying season in 2021, six rain events at site 1 and three at site 2 in 2022 were captured. Concurrently, the water quality parameters electrical conductivity, pH, nitrate, turbidity, and water level, were monitored continuously at high temporal resolution. Further, bacterial cell counts were monitored via online flow cytometry.In 2021, several pesticides and pesticide transformation products were detected in peak concentrations after rain events, of which metamitron showed the highest concentration of up to 1000 ng/L. In one rain event, the Swiss federal and EU drinking water limit of 100 ng/L was exceeded for up to 38 h. Compared with highly frequent MS2field samples collected every 20 min, 42-hours composite samples severely underestimated peak concentrations for all compounds, especially for labile ones. Therefore, it was demonstrated that exceedences of the regulatory limit would have been missed if just composite sampling would have been conducted. Peak concentrations of pesticides coincided with peaks in nitrate concentration and bacterial cell counts following rain events. The correlation analysis showed strong correlations between the three analyzed contaminants (pesticides, nitrate and bacteria), and the proxy parameters electrical conductivity, and pH. The investigation of a second spring revealed similar dynamics indicating that these can be expected in other karst aquifers as well.
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