The chemical composition of honey, and therefore its quality and properties, is influenced by many factors, including its botanical origin and the harvesting conditions—the location of the apiary, access to melliferous plants, the proximity of industrial infrastructure and communication routes, etc. This quality may be reduced by undesirable, toxic compounds that penetrate honey from a contaminated environment, such as heavy metals and residues from other environmental pollutants. Therefore, the aim of our research was to assess the quality of honeys from urbanized areas—in particular, to assess contamination with heavy metals and persistent organic pollutants (PAHs). In total, 35 samples from six different apiaries located in urbanized areas were examined. The content of heavy metals (Cd, Pb, Zn) was determined by atomic absorption spectrophotometry (AAS), and the content of total PAHs as the sum of the concentrations of the compounds benzo(a)anthracene, chrysene, benzo(b)fluoranthene and benzo(a)pyrene was determined by high-performance liquid chromatography with fluorescence detection (HPLC-FLD). The average zinc content ranged from about 2 to 4.5 mg/kg, the average lead content ranged from 3.5 µg/kg to 388 µg/kg and the average cadmium content ranged from 0.5 to 14 µg/kg. It was found that all honeys contained certain amounts of harmful metals, and only lead exceeded the permissible limits. None of the samples tested contained sum content of PAHs exceeding 10 µg/kg of honey. Contrary to our expectations, the results obtained indicate that honeys from urbanized areas do not contain these harmful substances. In general, the presence of harmful metals does not, however, reduce honey’s quality or its health value.