Qualitative Variations Research Articles

Mu and Delta Opioid Receptors Modulate Inhibition within the Prefrontal Cortex Through Dissociable Cellular and Molecular Mechanisms.

The endogenous opioid system regulates behaviors that rely on prefrontal cortex (PFC) function. Previous studies have described Mu and Delta opioid receptor expression within cortical GABAergic interneurons, but a detailed understanding of how opioids regulate different interneuron subtypes and cortical microcircuits has not been reported. We use whole-cell patch-clamp electrophysiology, genetically engineered mice, and optogenetics to assess MOR and DOR regulation of PFC inhibitory transmission, demonstrating that MOR and DOR inhibition of interneurons display qualitative and quantitative variation across GABAergic circuits within mouse prelimbic PFC.

Meritocratic beliefs in the United States, Finland, and China: A multidimensional approach using latent class analysis.

This study employs latent class analysis (LCA) as a novel methodology to investigate the multidimensional nature of meritocratic beliefs, addressing the limitations of traditional unidimensional approaches. Using data from the International Social Survey Program 2009 for the United States, Finland, and China, this study demonstrates several advantages of this multidimensional approach. First, LCA effectively identifies dual consciousness, where individuals simultaneously endorse meritocratic and structuralist explanations of social stratification. The analysis reveals three distinct narratives explaining social stratification: purely meritocratic beliefs, predominantly meritocratic beliefs, and dual consciousness. While all three subtypes consider merits highly important, they differ in their perceived importance of structural factors. Second, LCA facilitates cross-national comparisons, unveiling qualitative typological variations in meritocratic beliefs across countries. Unique country-specific subtypes or patterns emerge: Finland exhibits purely meritocratic beliefs, the United States shows predominantly meritocratic beliefs, and China demonstrates a dominance of dual consciousness. Although dual consciousness exists in all three countries, its prevalence varies significantly-dominant in China, moderate in the United States, and least in Finland. Third, this study reveals that the effect of education on meritocratic beliefs varies across the three countries. Education strengthens individual meritocratic beliefs in the United States, weakens them in Finland, and shows no significant effect in China. These findings highlight both within-country and across-country heterogeneity of meritocratic beliefs, underscoring the importance of amultidimensional approach.

Phyto-cytogenotoxic potential assessment of two medicinal plants: Davilla nitida (Vahl) Kubitzki and Davilla elliptica (A. St.-Hill) (Dilleniaceae)

ABSTRACT Humans have been using plants in the treatment of various diseases for millennia. Currently, even with allopathic medicines available, numerous populations globally still use plants for therapeutic purposes. Although plants constitute a safer alternative compared to synthetic agents, it is well established that medicinal plants might also exert adverse effects. Thus, the present investigation aimed to assess the phytotoxic, cytotoxic, and genotoxic potential of two plants from the Brazilian Cerrado used in popular medicine, Davilla nitida (Vahl) Kubitzki, and Davilla elliptica (A. St.-Hil.). To this end, germination, growth, and cell cycle analyses were conducted using the plant model Lactuca sativa. Seeds and roots were treated with 0.0625 to 1 g/L for 48 hr under controlled conditions. The germination test demonstrated significant phytotoxic effects for both species at the highest concentrations tested, while none of the extracts produced significant effects in the lettuce growth test. In the microscopic analyses, the aneugenic and cytotoxic action of D. elliptica was evident. In the case of D. nitida greater clastogenic action and induction of micronuclei, (MN) were noted suggesting that the damage initiated by exposure to these extracts was not repaired or led to apoptosis. These findings indicated that the observed plant damage was transmitted to the next generation of cells by way of MN. These differences in the action of the two species may not be attributed to qualitative variations in the composition of the extracts as both are similar, but to quantitative differences associated with synergistic and antagonistic interactions between the compounds present in these extracts.

Comparative nutrient and chemometric analysis of leaf to fruits of Soursop (Annona muricata) and Bullock's heart (Annona reticulata): Implications for nutraceutical development

The study investigates comparative nutrient-chemo profiling of fruit genotypes (AM 02, AM 05, AM 06, AM 07, AM 08, AM 09, AM 10) from different locations of Tamil Nadu, India, to leaves (AM Leaf) of Soursop (Annona muricata) and fruits of Bullock's heart (Annona reticulata-AR 02) using various spectroscopic techniques. The concentration of annonacin is three times higher in AM Leaf than in AM and AR 02 fruits. AM Leaf is significantly rich in carbohydrates (27.1 %), proteins (18.88 %), crude fibers (32.51 %), phenols (1360.85 mg/100 g) and flavonoids (887.25 mg/100 g) along with annonacin (2283.77 mg/100 g). Among the fruits, AM 08 is rich in potassium (726.43 mg/100 g), AM 05 with Vitamin C (20.02 IU), and AR 02 in calcium (134.34 mg/100 g). GC-MS analysis identified 116 bioactives with a strong correlation among AM fruits (>90 %) followed by AR 02 and AM Leaf. PCA shows two distinct clusters of qualitative variation (51.2 %) in metabolites, with AM Leaf recording higher variation in metabolites than fruit genotypes. Seven (AM 02, AM 05), eight (AM 06 and AM Leaf), and nine (AM 07, AM 08, AM 09, AM 10, AR 02) metabolites show anti-cancer properties. These finding may help in developing supplementary nutraceutical products for cancer therapeutics.

Biochemical and molecular characterization of pyrifluquinazon resistance in Bemisia tabaci Asia I

One of the most devastating polyphagous pests in the world, Bemisia tabaci (Gennadius), causes significant damage to a variety of crops and has demonstrated the ability to develop resistance to different classes of insecticides rapidly. A novel pyridine azomethine derivative pyrifluquinazon exhibits exceptional insecticidal toxicity against B. tabaci by interrupting the function of chordotonal receptor neurons. Formulating resistance management strategies is crucial to ensure the long-term use of this insecticide for whitefly control; however, the characteristics and possible mechanisms of pyrifluquinazon resistance in B. tabaci remain unclear. By employing pyrifluquinazon selection for 22 successive generations, the pyrifluquinazon-resistant strain (PQZ-R) was generated from a laboratory-susceptible population of B. tabaci Asia I (Lab-WB) and exhibited 39.65-fold resistance to pyrifluquinazon. When the realized heritability (h2) of B. tabaci to pyrifluquinazon was assumed to be the laboratory-estimated value (h2 = 0.181) and the mortality was 70–90%, only 12.3–22.6 generations were expected to be required to obtain a 10-fold increase in pyrifluquinazon resistance. While there was no significant cross-resistance to cyantraniliprole, dinotefuran, flonicamid, flupyradifurone, pymetrozine, sulfoxaflor, or thiamethoxam, the PQZ-R strain displayed slight cross-resistance to afidopyropen (3.14-fold). Synergism tests indicated that piperonyl butoxide (PBO) inhibits (4.36-fold) pyrifluquinazon resistance in the PQZ-R strain. This impact may be attributed to enhanced detoxification (elevated 3.91-fold) mediated by cytochrome P450 monooxygenase (P450). Compared to Lab-WB, the PQZ-R strain exhibited no significant overexpression of the 13 published detoxification-related P450 genes from CYP303, CYP4, and CYP6 families in B. tabaci. The combined knowledge gained from this study will enable further investigations into the function of qualitative and quantitative variations in P450-encoded genes, leading to innovative approaches for efficiently managing B. tabaci.

Growing Confidence and Remaining Uncertainty About Animal Consciousness

While the study of consciousness has had a controversial history and, until recently, a pessimistic prognosis, recent views within the neuroscientific community suggest that a maturing if incomplete scientific understanding of consciousness is close at hand. The purpose of this essay is to specify the major points on which in my opinion there is widespread though not universal agreement, as proposed benchmarks for the current state of consciousness research across the phylogenetic spectrum. Most published definitions of consciousness boil down to a focus on it as a process arising in a nervous system engaged with a body and its environment, giving rise to subjective (personal) experience. A broad consensus on the phenomenology of consciousness sees it consisting at a minimum of (1) awareness_ _and focused attention, (2) unity of perception, (3) qualitative variations in content, (4) mental causation, and (5) a sense of self. There is also broad agreement that the substrate of consciousness requires sizeable, complex nervous systems organized into several hierarchical levels of processing. Further insight is gained by reconstructing the evolution of subjective phenomenological experience ― most likely from multiple origins, hosted by a diversity of body and brain architectures, and diverging into markedly different forms across the animal kingdom. However, three major mysteries about phenomenological experience that remain unresolved are (1) the neurological correlates of consciousness, (2) the apparent gap between phenomenology and mechanism, and (3) the process that monitors the brain activity admitted into consciousness.

Multiple aspects of matrix stiffness in cancer progression.

The biophysical and biomechanical properties of the extracellular matrix (ECM) are crucial in the processes of cell differentiation and proliferation. However, it is unclear to what extent tumor cells are influenced by biomechanical and biophysical changes of the surrounding microenvironment and how this response varies between different tumor forms, and over the course of tumor progression. The entire ensemble of genes encoding the ECM associated proteins is called matrisome. In cancer, the ECM evolves to become highly dysregulated, rigid, and fibrotic, serving both pro-tumorigenic and anti-tumorigenic roles. Tumor desmoplasia is characterized by a dramatic increase of α-smooth muscle actin expressing fibroblast and the deposition of hard ECM containing collagen, fibronectin, proteoglycans, and hyaluronic acid and is common in many solid tumors. In this review, we described the role of inflammation and inflammatory cytokines, in desmoplastic matrix remodeling, tumor state transition driven by microenvironment forces and the signaling pathways in mechanotransduction as potential targeted therapies, focusing on the impact of qualitative and quantitative variations of the ECM on the regulation of tumor development, hypothesizing the presence of matrisome drivers, acting alongside the cell-intrinsic oncogenic drivers, in some stages of neoplastic progression and in some tumor contexts, such as pancreatic carcinoma, breast cancer, lung cancer and mesothelioma.

Expansion of human allogeneic liver-derived progenitor cells for liver regenerative therapy in serum-free culture conditions

Human allogeneic liver-derived progenitor cells (HALPCs) display advanced ability to differentiate into hepatocyte-like cells and exhibit potent immunomodulatory, anti-inflammatory, and anti-fibrotic properties. HALPCs have been successfully manufactured under good manufacturing practice (GMP) and are currently in clinical development. A previous phase 2a trial demonstrated the safety of peripheral intravenous infusions of HALPCs and preliminary evidence of the cells’ properties to restore liver function in patients with acute-on-chronic liver failure (ACLF), thus potentially improving their survival. A phase 2b trial is currently ongoing across multiple centers (NCT04229901) to obtain proof-of-concept on efficacy and additional safety. HALPCs are currently manufactured using fetal bovine serum (FBS), which can reveal qualitative and quantitative variations between batches. The use of serum-free medium (SFM) represents an alternative means to overcome this variability while also complying fully with regulations. The aim of this study was to compare current FBS-containing culture conditions with two industry-available GMP-compliant SFMs: StemMACS (Miltenyi Biotec, Bergisch Gladbach, Germany) and PRIME-XV (FUJIFILM Irvine Scientific, Santa Ana, California, USA).The proliferation of HALPCs was significantly stimulated by both SFMs, which shortened both their emergence period and population doubling time. This effect was correlated with a significant improvement in their genetic stability as analyzed by conventional karyotyping. The expression profile (identity and purity) and functionality of HALPCs cultured in SFM were maintained, as demonstrated by flow cytometry and enzyme-linked immunoassay (ELISA), respectively. Their potency, evaluated via prostaglandin E2 (PGE2) secretion, showed a similar effect on CD4+ T-cell proliferation in FBS and SFM conditions. Furthermore, a greater proportion of HALPCs cultured in SFM showed enhanced expression of tissue factor (CD142) compared with the FBS condition.Altogether, SFM conditions enabled consistent HALPC quality to be achieved without altering their expression and functional profiles.

MitoPADdb: A database of mitochondrial proteins associated with diseases

Mitochondrial protein/gene mutations and expression variations contribute to the pathogenesis of various diseases, such as neurodegenerative and metabolic diseases. Detailed studies on mitochondrial protein-encoding (MPE) genes across diseases can provide clues for novel therapeutic strategies. Here, we collected, compiled, and manually curated the MPE gene mutation and expression variations data and their association with diseases in a single platform named mitoPADdb. The database contains 810 genes with 18,356 mutations and 1284 qualitative expression variations associated with 1793 diseases, grouped into 15 categories. It allows users to perform a comparative quantitative gene expression analysis for 317 transcriptomic studies across disease categories. Further, it provides information on MPE genes-associated molecular pathways. The mitoPADdb is a valuable resource for investigating mitochondrial dysfunction-related diseases. It can be accessed via http://bicresources.jcbose.ac.in/ssaha4/mitopaddb/index.html.

Transition to oscillatory instability of lean methane–air flames in microchannels

Micro-flow reactors and porous media burners are prone to instability in the form of flame with repetitive extinction and ignition (FREI) near the region of a temperature gradient. Although significant progress has been made in this field, there is still a lack of understanding regarding the nature of such stable-to-unstable transition. Some studies reported a smooth and continuous instability transition in microchannels, interpreting this phenomenon as a supercritical bifurcation. Meanwhile, others have observed that the transition is subcritical, with rapid, stepwise evolution of the stable flame to FREI. This study aims to rigorously determine the transition character theoretically and numerically using a two-dimensional model with a precise resolution of the bifurcation parameter (flow velocity) near the critical point and gradual wall temperature ramp. The results indicate that the transition is a subcritical bifurcation with strong hysteresis. However, the amplitude of the limit cycle born in the bifurcation point could be small compared to FREI-like oscillations. Moreover, further development of the instability depends significantly on the channel width. In relatively wide channels, the stable regime transforms immediately into the extinction/ignition one with rapid growth in amplitude. In moderate channels, complex transitional dynamics were observed with an evident pulsating regime, which evolved into FREI through mixed-mode oscillations. In narrow channels, the amplitude of transitional pulsating flame becomes comparable to the fully-developed extinction/ignition cycles, and the bifurcation diagram has a continuous character with no significant jumps or discontinuities. Such qualitative variation of transition character provides a possible explanation for contradictory interpretations presented in the literature.Novelty and Significance StatementCurrently, there is no consensus about the character of transition between the stable and extinction/ignition regimes in microchannels. Some studies have reported a continuous instability transition with an evident pulsating regime, interpreting it as a supercritical bifurcation, while others have observed subcritical bifurcation with a rapid transition. The novelty of this research lies in the rigorous determination of the bifurcation type and further instability development in microchannels of different widths based on an accurate simulation of flame dynamics near the critical point with very small steps of the flow velocity variation, along with the bifurcation theory. The study contributes to understanding the instability transition nature and may explain the different interpretations of the transitional phenomenon found in the literature. The results offer valuable insights for designing micro-scale and porous media combustion devices.

Analysis of the settling process to improve the quality of phosphate products of the Djebel Onk deposit

The object of the study is the phosphates of the Djebel Onk region, which are part of a vast group of phosphate deposits formed in the Late Cretaceous-Eocene period on the South and Southeast Mediterranean shores. These concentrations of economic interest are operated near the town of Bir El Ater (Tebessa, Algeria). The mining industry based on the extraction and processing of different minerals while respecting the environmental framework plays an important role in the economy of a country. The economic potential of each country will be determined based on the level of production of metals and various mineral substances. In the case of the Djebel Onk phosphate ore, the most dominant mineral in addition to P2O5 is calcium carbonate CaCO3 with more than 50 % in the all-mineral content. In addition, phosphate concentrate contains harmful elements which reduce the value of the market product. Therefore, this study aims to recover the enriched product efficiently and profitably with a minimum of deleterious elements. This work aims to develop a treatment technology with a minimum rejection rate, which allows for achieving production goals and reducing environmental impacts. For this purpose, we proposed an enrichment of these phosphate discharges from the settling process utilizing pneumatic selection (Turbo Separator Ventilate – TSV). The results of the chemical analyses confirm the significant difference in useful and major elements (P2O5) and the minor and harmful elements (MgO). According to the granulochemical analysis of each slice, it is possible to note that the P2O5 content is similar to the various particle-size slices. It is therefore necessary to treat the mass of waste if we want to recover as much phosphate as possible. The obtained X-ray diffractograms highlighted appreciable differences between the raw phosphates and the concentrates, in fact, the qualitative and quantitative variation of the mineralogical species, particularly the calcite, quartz, dolomite, and apatite. TSV is a process used to improve the quality and quantity of phosphate and to eliminate the layer below 0.8 mm. Corresponding to the analyses it was appeared that the P2O5 content 29.5–30 % of the settled product increases to 30.2–31 % after dust removal. Then it is possible to achieve an increase in the quality of phosphate from 63/65 % TPL to 66/68 % TPL.

Non-Herbivore-Induced Plant Organic Volatiles of Tomato Cultivars and Their Effect on Pest Biological Control

Herbivore-induced plant organic volatiles (HIPVs) have recently been studied to improve biological pest control. In contrast, the effects of volatile organic compounds (VOCs) that are not induced by herbivory (non-HIPVs) have received less attention. The latter are essential in the first stages of crop colonization by entomophagous insects (predators and parasitoids) used in biological pest control programs. Furthermore, the effects on entomophagous insects of different cultivars of a cultivated botanical species have not been studied. The aim of this work was to study the different non-HIPVs found in 10 tomato cultivars used in tomato greenhouses on two entomophages: the egg parasitoid Trichogramma achaeae (Hymenoptera, Trichogrammatidae) and the zoo-phytophagous predator Nesidiocoris tenuis (Hemiptera, Miridae). The results indicate that although there is considerable quantitative and qualitative variation in the emission of VOCs in the 10 tomato cultivars analysed, this variability made it difficult to determine the influence of the volatiles on the attraction of the predatory species N. tenuis, with only one cultivar (Rebelion) exhibiting a significantly higher attractiveness than the rest of the cultivars. For the parasitoid T. achaeae, these same volatiles had a significant effect (in part) on parasitoid behaviour. However, this attraction was not reflected in the discriminant analysis, at least for the volatiles analysed. The analysis showed four groups of well-differentiated cultivars, according to the non-HIPV composition, and this bore no relation to the levels of attractiveness registered in the different cultivars, with the exception again of the Rebelion cultivar, which seems not to be very attractive for the parasitoid and its parasitism activity. The implications of non-herbivore-induced (non-HPV) VOCs in the biological control of greenhouse pest species are described and discussed.

Passive Control Measures of Wind Flow around Tall Buildings

The growth and diversification of tall buildings demands higher performance standards that encompass serviceability and resilience. In this respect, the control of air flow around tall buildings poses challenges to minimising the energy that could induce large vibrations or forces. The present investigation scrutinises the flow around a tall structure with variations on its surface roughness by adding balconies to the facade, as a form of passive control of the flow loads. This is conducted through flow simulations across optimised computational arrays that capture 3D effects. To illustrate the applicability of the proposed approach, two types of facades rotated 0∘, 90∘ and 180∘ are considered while focusing on pressure and vorticity fields. It was found that the presence of balconies produces zig-zag patterns on the face where they are located, whereas balconies on the front facade reduce drag with respect to the smooth case. Furthermore, buildings with balconies on their lateral faces experience some increase in drag force and the improvement of the aerodynamics around the lateral pedestrian zones. No qualitative variations between triangular and rectangular balconies were found, excepting some changes in pressure magnitude on the rear side induced by balconies placed on the front and rear facades. Through the comparison of results, it was confirmed that the findings align with previous studies undertaken for medium and low-rise buildings. This reinforces the proposal of using such passive control measures to improve the aerodynamic performance of tall buildings. The study enables the quantification of flow configurations and forces on the building’s faces. Some of the proposed passive control measures effectively mitigate pressure levels while causing large local disturbs on pressure and vorticity that should be attended to by designers of this type of facades.

Surgeon variation: a south african spinal pathology treatment survey.

To investigate variation in treatment decisions among spine surgeons in South Africa and the association between surgeon characteristics and the treatment they select. We surveyed 79 South African spine surgeons. We presented four vignettes (cervical spine distractive flexion injury, lumbar disc herniation, degenerative spondylolisthesis with stenosis, and insufficiency fracture) for them to assess and select treatments. We calculated the index of qualitative variation (IQV) to determine the degree of variability within each vignette. We used Fisher's exact, and Kruskal-Wallis tests to assess the relationships between surgeons' characteristics and their responses per vignette. We compared their responses to the recommendations of a panel of spine specialists. IQVs showed moderate to high variability for cervical spine distractive flexion injury and insufficiency fracture and slightly lower levels of variability for lumbar disc herniation and degenerative spondylolisthesis with stenosis. This confirms the heterogeneity in South African spine surgeons' management of spinal pathologies. The surgeon characteristics associated with their treatment selection thatwere important were caseload, experience and training, and external funding. Also, 19% of the surgeons selected a treatment option that the Panel did not support. The findings make a case for evaluating patient outcomes and costs to identify value-based care. Such research would help countries that are seeking to contract with providers on value. Greater uniformity in treatment and easily accessible outcomes reporting would provide guidance for patients. Further investment in training and participation in fellowship programs may be necessary, along with greater dissemination of information from the literature.

Variation of practice in the treatment of pyogenic spondylodiscitis: a European Association of Neurosurgical Societies Spine Section study.

The incidence of spondylodiscitis is rising across Europe, but the ideal treatment approach remains controversial. The choice between conservative and surgical therapies is ambiguous due to a lack of consensus. This European survey aimed to explore prevailing treatment paradigms for primary spondylodiscitis. Spine neurosurgeons were invited through the European Association of Neurosurgical Societies Spine Section's mailing list to participate in an online survey featuring 7 spondylodiscitis case vignettes. Along with general management queries, specific patient treatment questions were posed. Data analysis was performed using R software (version 4.0.4). The index of qualitative variation (IQV) was calculated to quantify the variability in responses. A total of 130 responses were collected, comprising 86.9% board-certified neurosurgeons and 13.1% neurosurgeons in training, with an average of 11 years of practice. Most respondents performed 50-100 spine surgeries annually, with 66.7% specializing in spine surgery. An epidural empyema causing pronounced neurological deficits influenced 95.4% toward a surgical intervention, and mild neurological deficits and challenges in pathogen identification prompted 72.3% and 80%, respectively, to consider a surgical approach. Vertebral body destruction and spinal deformity directed 60% and 66.2%, respectively, toward surgery, whereas advanced age and comorbidities had a much smaller impact-5.4% and 9.2%, respectively. Clinical vignettes highlighted a predominant preference for conservative treatment in specific cases, with statistical significance (p < 0.05). The IQV values evaluated for each question ranged from 0.88 to 0.99, indicating low agreement across all questions among respondents. When examining the average IQV by country, intercountry variations in IQV were substantial, as illustrated by the diverse range of overall mean IQV values (0.15-0.85). The findings reveal a significant variability in the treatment of spondylodiscitis among European neurosurgeons, with most neurosurgeons opting for conservative treatment. These diverse strategies, both between and within countries, highlight an imperative for evidence-backed guidelines and consensus statements for this grave condition.

Women Skin Microbiota Modifications during Pregnancy.

Several studies have shown fluctuations in the maternal microbiota at various body sites (gut, oral cavity, and vagina). The skin microbiota plays an important role in our health, but studies on the changes during pregnancy are limited. Quantitative and qualitative variations in the skin microbiota in pregnant woman could indeed play important roles in modifying the immune and inflammatory responses of the host. These alterations could induce inflammatory disorders affecting the individual's dermal properties, and could potentially predict infant skin disorder in the unborn. The present study aimed to characterize skin microbiota modifications during pregnancy. For this purpose, skin samples were collected from 52 pregnant women in the first, second, and third trimester of non-complicated pregnancies and from 17 age- and sex-matched healthy controls. The skin microbiota composition was assessed by next generation sequencing (NGS) of the V3-V4 region of the bacterial rRNA 16S. Our results indicate that from the first to the third trimester of pregnancy, changes occur in the composition of the skin microbiota, microbial interactions, and various metabolic pathways. These changes could play a role in creating more advantageous conditions for fetal growth.

Chemometric Analysis Evidencing the Variability in the Composition of Essential Oils in 10 Salvia Species from Different Taxonomic Sections or Phylogenetic Clades.

Essential oil (EO) of Salvia spp. has been widely used for culinary purposes and in perfumery and cosmetics, as well as having beneficial effects on human health. The present study aimed to investigate the quantitative and qualitative variations in EOs in wild-growing and cultivated pairs of samples from members in four Salvia sections or three clades, namely S. argentea L. (Sect. Aethiopis; Clade I-C), S. ringens Sm. (Sect. Eusphace; Clade I-D), S. verticillata L. (Sect. Hemisphace; Clade I-B), S. amplexicaulis Lam., and S. pratensis L. (Sect. Plethiosphace; Clade I-C). Furthermore, the natural variability in EO composition due to different genotypes adapted in different geographical and environmental conditions was examined by employing members of three Salvia sections or two phylogenetic clades, namely S. sclarea L. (six samples; Sect. Aethiopis or Clade I-C), S. ringens (three samples; Sect. Eusphace or Clade I-D), and S. amplexicaulis (five samples; Sect. Plethiosphace or Clade I-C). We also investigated the EO composition of four wild-growing species of two Salvia sections, i.e., S. aethiopis L., S. candidissima Vahl, and S. teddii of Sect. Aethiopis, as well as the cultivated material of S. virgata Jacq. (Sect. Plethiosphace), all belonging to Clade I-C. The EO composition of the Greek endemic S. teddii is presented herein only for the first time. Taken together, the findings of previous studies are summarized and critically discussed with the obtained results. Chemometric analysis (PCA, HCA, and clustered heat map) was used to identify the sample relationships based on their chemical classes, resulting in the classification of two distinct groups. These can be further explored in assistance of classical or modern taxonomic Salvia studies.

In Drosophila Hemolymph, Serine Proteases Are the Major Gelatinases and Caseinases.

After separation on gel zymography, Drosophila melanogaster hemolymph displays gelatinase and caseinase bands of varying sizes, ranging from over 140 to 25 kDa. Qualitative and quantitative variations in these bands were observed during larval development and between different D. melanogaster strains and Drosophila species. The activities of these Drosophila hemolymph gelatinase and caseinase were strongly inhibited by serine protease inhibitors, but not by EDTA. Mass spectrometry identified over 60 serine proteases (SPs) in gel bands corresponding to the major D. melanogaster gelatinases and caseinases, but no matrix metalloproteinases (MMPs) were found. The most abundant proteases were tequila and members of the Jonah and trypsin families. However, the gelatinase bands did not show any change in the tequila null mutant. Additionally, no clear changes could be observed in D. melanogaster gel bands 24 h after injection of bacterial lipopolysaccharides (LPS) or after oviposition by Leptopilina boulardi endoparasitoid wasps. It can be concluded that the primary gelatinases and caseinases in Drosophila larval hemolymph are serine proteases (SPs) rather than matrix metalloproteinases (MMPs). Furthermore, the gelatinase pattern remains relatively stable even after short-term exposure to pathogenic challenges.

Volatilomic signatures of different strains of Helicobacter pylori.

Helicobacter pylori (H. pylori) infection is the most extensively studied risk factor for gastric cancer. As with any bacteria, H. pylori will release distinctive odors that result from an emission of volatile metabolic byproducts in unique combinations and proportions. Effectively capturing and identifying these volatiles can pave the way for the development of innovative and non-invasive diagnostic methods for determining infection. Here we characterize the H. pylori volatilomic signature, pinpoint potential biomarkers of its presence, and evaluate the variability of volatilomic signatures between different H. pylori isolates. Using needle trap extraction, volatiles in the headspace above H. pylori cultures were collected and, following thermal desorption at 290°C in a splitless mode, were analyzed using gas chromatography-mass spectrometry. The resulting volatilomic signatures of H. pylori cultures were compared to those obtained from an analysis of the volatiles in the headspace above the cultivating medium only. Amongst the volatiles detected, 21 showed consistent differences between the bacteria cultures and the cultivation medium, with 11 compounds being elevated and 10 showing decreased levels in the culture's headspace. The 11 elevated volatiles are four ketones (2-pentanone, 5-methyl-3-heptanone, 2-heptanone, and 2-nonanone), three alcohols (2-methyl-1-propanol, 3-methyl-1-butanol, and 1 butanol), one aromatic (styrene), one aldehyde (2-ethyl-hexanal), one hydrocarbon (n-octane), and one sulfur compound (dimethyl disulfide). The 10 volatiles with lower levels in the headspace of the cultures are four aldehydes (2-methylpropanal, benzaldehyde, 3-methylbutanal, and butanal), two heterocyclic compounds (2-ethylfuran and 2-pentylfuran), one ketone (2-butanone), one aromatic (benzene), one alcohol (2-butanol) and bromodichloromethane. Of the volatile species showing increased levels, the highest emissions are found to be for 3-methyl-1-butanol, 1-butanol and dimethyl disulfide. Qualitative variations in their emissions from the different isolates was observed. The volatiles emitted by H. pylori provide a characteristic volatilome signature that has the potential of being developed as a tool for monitoring infections caused by this pathogen. Furthermore, using the volatilome signature, we are able to differentiate different isolates of H. pylori. However, the volatiles also represent potential confounders for the recognition of gastric cancer volatile markers.

Letermovir use may impact on the Cytomegalovirus DNA fragmentation profile in plasma from allogeneic hematopoietic stem cell transplant recipients.

Cytomegalovirus (CMV) DNA in plasma is mainly unprotected and highly fragmented. The size of the amplicon largely explains the variation in CMV DNA loads quantified across PCR platforms. In this proof-of-concept study, we assessed whether the CMV DNA fragmentation profile may vary across allogeneic hematopoietic stem cell transplant recipients (allo-SCT), within the same patient over time, or is affected by letermovir (LMV) use. A total of 52 plasma specimens from 14 nonconsecutive allo-SCT recipients were included. The RealTime CMV PCR (Abbott Molecular), was used to monitor CMV DNA load in plasma, and fragmentation was assessed with a laboratory-designed PCR generating overlapping amplicons (around 90-110 bp) within the CMV UL34, UL80.5, and UL54 genes. Intrapatient, inter-patient, and LMV-associated qualitative and quantitative variations in seven amplicons were observed. These variations were seemingly unrelated to the CMV DNA loads measured by the Abbott PCR assay. CMV DNA loads quantified by UL34_4, UL54.5, and UL80.5_1 PCR assays discriminate between LMV and non-LMV patients. Our observations may have relevant implications in the management of active CMV infection in allo-SCT recipients, either treated or not with LMV, although the data need further validation.