Acteoside (ACT) is the main active ingredient in phenylethanoid glycosides (PhGs) and it has anti-inflammatory, liver-protecting, and memory-enhancing functions. It remained a challenge to develop an imprinted membrane with high permselectivity for separation of ACT from PhGs. In this paper, ACT was used as a template molecule to design dual imprinted molecularly imprinted composite membranes (DIMICMs). The dual imprinted network structure was constructed and played a vital role in DIMICMs. On one hand, ACT imprinted network was formed on the surface of ACT-KH570/PDA/CMK-3@PVDF, and it can recognize and adsorb ACT. On the other hand, the imprinted filler ACT-KH570/PDA/CMK-3 was mixed with PVDF powder to construct the ACT imprinted network in the membrane, and the imprinted network can further recognize and accommodate the ACT. The dual imprinted network acted synergistically for dual recognition of ACT. The result showed that the DIMICMs had the high permselectivity (β = 14.61), selectivity (α = 4.64) and rebinding capacity (105.58 mg/g). The designed approach of DIMICM with a dual imprinted network provided a strategy for the separation of natural products.