Putative Source Populations Research Articles

Long shared haplotypes identify the Southern Urals as a primary source for the 10th century Hungarians.

During the Hungarian Conquest in the 10th century CE, the early medieval Magyars, a group of mounted warriors from Eastern Europe, settled in the Carpathian Basin. They likely introduced the Hungarian language to this new settlement area, during an event documented by both written sources and archaeological evidence. Previous archaeogenetic research identified the newcomers as migrants from the Eurasian steppe. However, genome-wide ancient DNA from putative source populations has not been available to test alternative theories of their precise source. We generated genome-wide ancient DNA data for 131 individuals from candidate archaeological contexts in the Circum-Uralic region in present-day Russia. Our results tightly link the Magyars to people of the Early Medieval Karayakupovo archaeological horizon on both the European and Asian sides of the southern Urals. Our analyes show that ancestors of the people of the Karayakupovo archaeological horizon were established in the Southern Urals by the Iron Age and that their descendants persisted locally in the Volga-Kama region until at least the 14th century.

Ancestry and genetic structure of resident and anadromous rainbow trout (Oncorhynchus mykiss) in Argentina.

Since the first introduction from North America more than a century ago, rainbow trout (Oncorhynchus mykiss) have rapidly established self-sustaining populations in major river basins of Patagonia. Many generations later, only the freshwater resident life history is expressed in the Chubut and Negro rivers of northern Argentinian Patagonia, whereas both the resident and anadromous life histories are found in the Santa Cruz River of southern Argentina. Despite previous studies that have tried to identify the sources of these introduced populations, uncertainty still exists. Here we combined data from many single-nucleotide polymorphisms and microsatellite loci in O. mykiss populations from Argentina and North America to evaluate putative source populations, gene flow between Argentinian river basins, and genetic diversity differences between Argentinian and North American populations. We found that populations from northern and southern Patagonia are highly differentiated and have limited gene flow between them. Phylogeographic analysis also confirmed that they have separate origins, with the northern populations most closely related to the domesticated rainbow trout strains that are raised worldwide and the Santa Cruz River populations most closely related to North American populations from California and Oregon that have an anadromous component. In addition, fish with different life histories in the Santa Cruz River were found to constitute a single interbreeding population. No evidence was found of reduced genetic variation in introduced rainbow trout, suggesting multiple contributing sources. In spite of these advances in understanding, significant questions remain regarding the origins and evolution of the introduced O. mykiss in Patagonia.

Eurasian back-migration into Northeast Africa was a complex and multifaceted process.

Recent studies have identified Northeast Africa as an important area for human movements during the Holocene. Eurasian populations have moved back into Northeastern Africa and contributed to the genetic composition of its people. By gathering the largest reference dataset to date of Northeast, North, and East African as well as Middle Eastern populations, we give new depth to our knowledge of Northeast African demographic history. By employing local ancestry methods, we isolated the Non-African parts of modern-day Northeast African genomes and identified the best putative source populations. Egyptians and Sudanese Copts bore most similarities to Levantine populations whilst other populations in the region generally had predominantly genetic contributions from the Arabian peninsula rather than Levantine populations for their Non-African genetic component. We also date admixture events and investigated which factors influenced the date of admixture and find that major linguistic families were associated with the date of Eurasian admixture. Taken as a whole we detect complex patterns of admixture and diverse origins of Eurasian admixture in Northeast African populations of today.

The spatio-temporal diversification of SRK alleles in an Arabidopsis polyploid hybrid and introgression zone

Reproductive barriers and directional geneflow may play a key role in maintaining genetic gradients, thereby allowing ecological differentiation along ecological clines. In Brassicaceae, a sporophytic incompatibility system (SI) contributes to such barriers to geneflow, with the maternal component represented by a large diversity of SRK (stigma-specific S locus receptor kinase) alleles at varying frequencies and levels of dominance. Such clinal genetic gradient along an ecological gradient following a shift towards much drier and warmer conditions and also the bedrock type shifts from calcareous to silicious has been found earlier in an Arabidopsis introgression system involving A. lyrata and A. arenosa. The metapopulation system spans from the northeastern Austrian forealps northward towards the Danube river and the Bohemian massif. Here we explore diversification of population-level SRK gene pools across these hybrid Arabidopsis tetraploid metapopulation system and its putative parental source populations. Since it has been demonstrated that A. lyrata served as the maternal parent and A. arenosa introgressed via pollen constituting a genetic cline with decreasing contribution of A. arenosa genetic background, we test the hypothesis that this cline can be also explained by SRK allelic differentiation. A total of 603 individuals from 45 populations of introgressed and non-introgressed A. lyrata and A. arenosa across a 80 km transect were analysed for SRK allele variation. In total, 22 alleles from all four previously described dominance classes have been documented. Although there is clinal morphological and genetic variation following the introgression zone, SRK alleles do not follow this signature of the paternal taxa. Furthermore, the functional SI system is fully maintained across the transect, and crossing experiments show that there is no decrease in fitness depending on varying distances between populations along the transect studied herein. We conclude that transmission and structure of the SRK allelic gene pool contributes to the postglacial colonization success along such a pronounced ecological gradient maintaining a functional SI system and counteracting genetic depletion.

Identifying the source populations supplying a vital economic marine species for the New Zealand aquaculture industry

Aquaculture of New Zealand’s endemic green-lipped mussel (Perna canaliculus) is an industry valued at NZ$ 336 M per annum and is ~ 80% reliant on the natural supply of wild mussel spat harvested at a single location—Te Oneroa-a-Tōhē—Ninety Mile Beach (NMB)—in northern New Zealand. Despite the economic and ecological importance of this spat supply, little is known about the population connectivity of green-lipped mussels in this region or the location of the source population(s). In this study, we used a biophysical model to simulate the two-stage dispersal process of P. canaliculus. A combination of backward and forward tracking experiments was used to identify primary settlement areas and putative source populations. The model was then used to estimate the local connectivity, revealing two geographic regions of connectivity in northern New Zealand, with limited larval exchange between them. Although secondary dispersal can double the dispersal distance, our simulations show that spat collected at NMB originate from neighbouring mussel beds, with large contributions from beds located at Ahipara (southern end of NMB). These results provide information that may be used to help monitor and protect these important source populations to ensure the ongoing success of the New Zealand mussel aquaculture industry.

EDNA-based detection reveals invasion risks of a biofouling bivalve in the world's largest water diversion project.

Environmental DNA (eDNA) has increasingly been used to detect rare species (e.g., newly introduced nonindigenous species) in both terrestrial and aquatic ecosystems, often with distinct advantages over traditional methods. However, whether water eDNA signals can be used to inform invasion risks remains debatable owing to inherent uncertainties associated with the methods used and the varying conditions among study systems. Here, we sampled eDNA from canals of the central route of the South-to-North Water Diversion Project (hereafter SNWDP) in China to investigate eDNA distribution and efficacy to inform invasion risks in a unique lotic system. We first conducted a total of 16 monthly surveys in this system (two sites in the source reservoir and four sites in the main canal) to test if eDNA could be applied to detect an invasive, biofouling bivalve, the golden mussel Limnoperna fortunei. Second, we initiated a one-time survey in a sub-canal of the SNWDP using refined sampling (12 sites in ~22 km canal) and considered a few environmental predictors. We found that detection of target eDNA in the main canal was achieved up to 1100 km from the putative source population but was restricted to the warmer months (May-November). Detection probability exhibited a significant positive relationship with average daily minimum air temperature and with water temperature, consistent with the expected spawning season. eDNA concentration in the main canal generally fluctuated across months and sites and was generally higher in warmer months. Golden mussel eDNA concentration in the sub-canal decreased significantly with distance from the source and with increasing water temperature and became almost undetectable at ~22 km distance. Given the enormity of the SNWDP, golden mussels may eventually expand their distribution in the main canal, with established "bridgehead" populations facilitating further spread. Our findings suggest an elevated invasion risk of golden mussels in the SNWDP in warmmonths, highlighting the critical period for spread and, possibly, management.

The genetic origin of Huns, Avars, and conquering Hungarians

Huns, Avars, and conquering Hungarians were migration-period nomadic tribal confederations that arrived in three successive waves in the Carpathian Basin between the 5th and 9th centuries. Based on the historical data, each of these groups are thought to have arrived from Asia, although their exact origin and relation to other ancient and modern populations have been debated. Recently, hundreds of ancient genomes were analyzed from Central Asia, Mongolia, and China, from which we aimed to identify putative source populations for the above-mentioned groups. In this study, we have sequenced 9 Hun, 143 Avar, and 113 Hungarian conquest period samples and identified three core populations, representing immigrants from each period with no recent European ancestry. Our results reveal that this "immigrant core" of both Huns and Avars likely originated in present day Mongolia, and their origin can be traced back to Xiongnus (Asian Huns), as suggested by several historians. On the other hand, the "immigrant core" of the conquering Hungarians derived from an earlier admixture of Mansis, early Sarmatians, and descendants of late Xiongnus. We have also shown that a common "proto-Ugric" gene pool appeared in the Bronze Age from the admixture of Mezhovskaya and Nganasan people, supporting genetic and linguistic data. In addition, we detected shared Hun-related ancestry in numerous Avar and Hungarian conquest period genetic outliers, indicating a genetic link between these successive nomadic groups. Aside from the immigrant core groups, we identified that the majority of the individuals from each period were local residents harboring "native European" ancestry.

Genotypes of Rhizophora Propagules From a Non-mangrove Beach Provide Evidence of Recent Long-Distance Dispersal

Dispersal plays a crucial role in the connectivity of established mangrove populations and in species range dynamics. As species ranges shift in response to climate change, range expansions can occur from incremental short-distance dispersal events and from stochastic long-distance dispersal events. Most population genetic research dealt with historically accumulated events though evidence of actual propagule dispersal allows to estimate genotypic features and origin of founders. In this study, we aim to disentangle a contemporary dispersal event. Using microsatellite markers, we genotyped 60 Rhizophora racemosa drift propagules obtained on a bare unforested coastal area in southern Cameroon, estimated their relationship to 109 adult trees from most proximate sites (which were 3–85 km away), and assessed their relative difference with 873 trees of major mangrove areas (> 300 km) along the Cameroonian coastline. Proximate mangrove populations were considered as potential source populations in assignment tests. However, drift propagules could not be assigned to any of the Cameroonian mangrove sites and were genetically isolated from Cameroonian populations. Drift propagules showed higher levels of genetic diversity and private alleles giving a higher relatedness to each other than to any putative source population. Chloroplast sequences were used to confirm the identity of drift propagules as R. racemosa. We postulate that a complex interaction of ocean currents, estuarine geomorphology, and tidal patterns explain drift propagule dispersal to an area. Most likely the investigated cohort of propagules originated from more southern mangrove areas of the West African range beyond the Cameroonian border. This study unraveled the allelic, genetic, and genotypic features of stranded propagules following a stochastic long-distance dispersal. Transboundary dispersal of these propagules highlights the need for intergovernmental efforts in the management of biodiversity.

Recent extinctions among Little Spotted Kiwi (Apteryx owenii) and the origin of extant populations

ABSTRACT Little Spotted Kiwi (LSK; Apteryx owenii) have the lowest genetic diversity of five currently recognised kiwi species apparently due to a bottleneck when at most five individuals were translocated to Kapiti Island in 1912. Ancient DNA analyses show that LSK also had the lowest genetic diversity of kiwi species historically, possibly due to population bottlenecks during Pleistocene glaciation. We compare genetic diversity between LSK from Kapiti Island (extant), D’Urville Island (extinct) and the South Island of mainland New Zealand (extinct) at 495 bp of the mitochondrial control region (mtDNA) and 15 nuclear microsatellite loci (nDNA). Despite higher sample sizes in extant (n = 31 mtDNA, 97 nDNA) than recently extinct (n = 10 mtDNA, 9 nDNA) populations, extant LSK have at least 78% fewer mtDNA haplotypes and 52% fewer microsatellite alleles than recently extinct LSK. Extant LSK were strongly divergent from historical LSK for both mtDNA and nDNA (FST = 0.237 to 0.480), but showed greatest similarity with historical samples from Fiordland near the putative source population of Kapiti founders. Microsatellite data suggest that Kapiti LSK could have arisen from as few as three birds and our mtDNA data show that at least two of the founders were female. Our results indicate that substantial genetic diversity has been lost with the recent extinctions of remnant populations. Locating and protecting any last surviving individuals in presumed extinct populations will require intensive conservation efforts, but could also provide an invaluable source of genetic diversity for the species.

Population genomics of invasive rodents on islands: Genetic consequences of colonization and prospects for localized synthetic gene drive.

Introduced rodent populations pose significant threats worldwide, with particularly severe impacts on islands. Advancements in genome editing have motivated interest in synthetic gene drives that could potentially provide efficient and localized suppression of invasive rodent populations. Application of such technologies will require rigorous population genomic surveys to evaluate population connectivity, taxonomic identification, and to inform design of gene drive localization mechanisms. One proposed approach leverages the predicted shifts in genetic variation that accompany island colonization, wherein founder effects, genetic drift, and island‐specific selection are expected to result in locally fixed alleles (LFA) that are variable in neighboring nontarget populations. Engineering of guide RNAs that target LFA may thus yield gene drives that spread within invasive island populations, but would have limited impacts on nontarget populations in the event of an escape. Here we used pooled whole‐genome sequencing of invasive mouse (Mus musculus) populations on four islands along with paired putative source populations to test genetic predictions of island colonization and characterize locally fixed Cas9 genomic targets. Patterns of variation across the genome reflected marked reductions in allelic diversity in island populations and moderate to high degrees of differentiation from nearby source populations despite relatively recent colonization. Locally fixed Cas9 sites in female fertility genes were observed in all island populations, including a small number with multiplexing potential. In practice, rigorous sampling of presumptive LFA will be essential to fully assess risk of resistance alleles. These results should serve to guide development of improved, spatially limited gene drive design in future applications.

Species distribution, hybridization and connectivity in the genus Chionodraco: Unveiling unknown icefish diversity in antarctica

AbstractAimThe species of the genus Chionodraco (Notothenioidei) are the most abundant icefish on the continental shelf of the Weddell Sea. While previous studies indicated that only Chionodraco hamatus and Chionodraco myersi inhabit the Weddell Sea, the third Chionodraco species, Chionodraco rastrospinosus, was recently sampled in the area. As C. rastrospinosus is supposed to be found only at the Antarctic Peninsula and Scotia Arc, this study aimed at confirming the species classification of C. rastrospinosus by molecular methods and identifying its putative source population. Given the documented evidence of introgression among the three species, we tested whether the newly found C. rastrospinosus shared any genetic variability with the other Chionodraco species. To explain the pattern of distribution of the Chionodraco species, we aimed at estimating the hydrodynamic connectivity between the Antarctic Peninsula and the Weddell Sea.LocationAntarctic Peninsula, southern Scotia Arc and the south‐eastern Weddell Sea.MethodsWe genotyped 19 microsatellites and sequenced the mitochondrial D‐loop for 560 Chionodraco individuals. We simulated the dispersal of more than 3 million drifters (Lagrangian model).ResultsThe molecular analyses support the presence of C. rastrospinosus in the Weddell Sea and its homogeneity with C. rastrospinosus from the Antarctic Peninsula. Bayesian clustering identifies three putative hybrids among C. rastrospinosus and the other congenerics. Lagrangian simulations do not support connectivity driven by the oceanographic features of the Antarctic Peninsula and Weddell Sea via passive larval dispersal only.Main conclusionsThis study documents, for the first time, the presence of C. rastrospinosus in the Weddell Sea unveiling more biodiversity than previously known in this region. The sympatry of the three Chionodraco species explains the occurrence of occasional, ongoing events of hybridization in the genus. Alternative possible hypotheses need to be tested in future studies about the mechanisms maintaining the interspecific connectivity in Chionodraco spp.

Natural and anthropogenic climate variability shape assemblages of range‐extending coral‐reef fishes

AbstractAimClimate change is redistributing species globally, resulting in altered community structures and ecosystem functioning. The current paradigm is that species should track temperature isoclines along latitudinal and depth gradients to remain within their thermal niches. However, the many exceptions to this rule point to complex ecological and environmental processes often overlooked in statistical models predicting species redistributions. We tested the contributions of natural versus anthropogenic climate change to the long‐term spatio‐temporal dynamics of assemblages of range‐shifting tropical fishes at the leading edge of redistribution fronts.LocationEast coast of Australia.TaxonTropical coral‐reef fishes.MethodsWe analysed 16 years (2003–2018) of tropical species occurrences at two temperate locations using traditional diversity metrics (richness, accumulation curves and β‐diversity). We also quantified the role of primary environmental covariates and estimated species associations using joint species distribution models.ResultsWe reveal that tropical species richness has increased in this temperate ecosystem over time. Furthermore, we show that the richness of tropical vagrant species increased with the sea‐surface temperature experienced by both local vagrants and their putative source populations at the southern Great Barrier Reef, which accounted for 23.1% and 22.1% of the explained variance, respectively. We also detected a signal from El Niño‐Southern Oscillation, as species turnover and richness peaked during the strong La Niña event of 2010–2011.Main conclusionsWhile the increases in ocean temperature and strength of the surface ocean current due to anthropogenic climate change are gradually favouring the poleward redistribution of tropical species, natural climatic oscillations can have a strong additive effect by rapidly modifying the pool of incoming species and potentially disrupting local communities.

Massive stranding event revealed the occurrence of an overlooked and ecosystem engineer sponge

Climate change is increasing the frequency, magnitude, and socio-economic costs of unprecedented extreme weather events and disasters. An exceptional stranding event of benthic species, mainly represented by the ecosystem engineer Porifera (Demospongiae) Geodia cydonium (Linnaeus, 1767) was observed in the Gulf of Oristano (Sardinia, Italy, Western Mediterranean) in 2018 after an extreme meteorological event. The stranding phenomenon was assessed and quantified by means of quadrats sampled along the beach highlighting all the conspicuous species; the benthic sponge community in the area was evaluated through underwater SCUBA transects. Stranding reached density peaks of up to 0.88 ind m−2, and the most abundant species reported was the sponge G. cydonium, followed by molluscs, bryozoans, a rare teleost fish, and many other species. The putative source populations were identified in quite shallow (less than 2.5-m depth) Posidonia oceanica (Linnaeus) Delile, 1813 meadows, where the sponge shows a mean density of 2.0 ind m−2. The present massive stranding event is the first in Sardinia and in the Mediterranean for this species, whose distribution is still poorly known. The living population of the gulf still seems in good status, and probably only a little percentage of specimens has been struck by the exceptionally strong hurricane. This work highlights the relevance of stranding events as opportunities for providing information about local biodiversity; biological traits of G. cydonium and the need of effective monitoring plans to fill the lack of knowledge about the distribution of this protected species are discussed.

RapidRat: Development, validation and application of a genotyping-by-sequencing panel for rapid biosecurity and invasive species management.

Invasive alien species (IAS) are among the main causes of global biodiversity loss. Invasive brown (Rattus norvegicus) and black (R. rattus) rats, in particular, are leading drivers of extinction on islands, especially in the case of seabirds where >50% of all extinctions have been attributed to rat predation. Eradication is the primary form of invasive rat management, yet this strategy has resulted in a ~10-38% failure rate on islands globally. Genetic tools can help inform IAS management, but such applications to date have been largely reactive, time-consuming, and costly. Here, we developed a Genotyping-in-Thousands by sequencing (GT-seq) panel for rapid species identification and population assignment of invasive brown and black rats (RapidRat) in Haida Gwaii, an archipelago comprising ~150 islands off the central coast of British Columbia, Canada. We constructed an optimized panel of 443 single nucleotide polymorphisms (SNPs) using previously generated double-digest restriction-site associated DNA (ddRAD) genotypic data (27,686 SNPs) from brown (n = 295) and black rats (n = 241) sampled throughout Haida Gwaii. The informativeness of this panel for identifying individuals to species and island of origin was validated relative to the ddRAD results; in all comparisons, admixture coefficients and population assignments estimated using RapidRat were consistent. To demonstrate application, 20 individuals from novel invasions of three islands (Agglomerate, Hotspring, Ramsay) were genotyped using RapidRat, all of which were confidently assigned (>98.5% probability) to Faraday and Murchison Islands as putative source populations. These results indicated that a previous eradication on Hotspring Island was conducted at an inappropriate geographic scale; future management should expand the eradication unit to include neighboring islands to prevent re-invasion. Overall, we demonstrated that RapidRat is an effective tool for managing invasive rat populations in Haida Gwaii and provided a clear framework for GT-seq panel development for informing biodiversity conservation in other systems.

Integrative biodiversity inventory of ants from a Sicilian archipelago reveals high diversity on young volcanic islands (Hymenoptera: Formicidae)

Islands are fascinating study systems for biogeography, allowing researchers to investigate patterns across organisms on a comparable geographical scale. They are also often important for conservation. Here, we present the first bio-inventory of the ant fauna of the Aeolian Islands, a Sicilian volcanic archipelago formed within the last million years. We documented a total of 40 species, including one first record for Italy (Lasius casevitzi). Mitochondrial DNA barcodes were obtained for all 40 taxa sampled on the islands, 13 of which were studied genetically for the first time. Mitochondrial DNA sequences of island specimens were compared with those of conspecific samples from other Aeolian Islands, Sicily and mainland Italy. Standardized photographical documentation of all sequenced specimens is provided. All but one currently recognized species (97.5%) were recovered as monophyletic. Genetic divergence within species ranged up to 12.4% in Pheidole pallidula, although most species had much lower levels of intraspecific divergence. At the scale of the Aeolian Islands, intraspecific genetic divergence varied significantly between subfamilies, with species of the subfamily Myrmicinae showing higher intraspecific divergences than the Formicinae. Comparison of specimens from the Aeolian Islands with conspecific ones from the putative source populations (Sicily and mainland Italy) suggested that the island of Panarea has the genetically most derived myrmeco-fauna among the seven focal Islands. Overall, DNA barcoding is a useful-albeit not perfect-method for classifying poorly studied groups of organisms and ants in particular.

Perturbation drives changing metapopulation dynamics in a top marine predator.

Metapopulation theory assumes a balance between local decays/extinctions and local growth/new colonisations. Here we investigate whether recent population declines across part of the UK harbour seal range represent normal metapopulation dynamics or are indicative of perturbations potentially threatening the metapopulation viability, using 20 years of population trends, location tracking data (n = 380), and UK-wide, multi-generational population genetic data (n = 269). First, we use microsatellite data to show that two genetic groups previously identified are distinct metapopulations: northern and southern. Then, we characterize the northern metapopulation dynamics in two different periods, before and after the start of regional declines (pre-/peri-perturbation). We identify source-sink dynamics across the northern metapopulation, with two putative source populations apparently supporting three likely sink populations, and a recent metapopulation-wide disruption of migration coincident with the perturbation. The northern metapopulation appears to be in decay, highlighting that changes in local populations can lead to radical alterations in the overall metapopulation's persistence and dynamics.

Postintroduction evolution contributes to the successful invasion of Chromolaena odorata.

The evolution of increased competitive ability (EICA) hypothesis states that, when introduced in a novel habitat, invasive species may reallocate resources from costly quantitative defense mechanisms against enemies to dispersal and reproduction; meanwhile, the refinement of EICA suggests that concentrations of toxins used for qualitative defense against generalist herbivores may increase. Previous studies considered that only few genotypes were introduced to the new range, whereas most studies to test the EICA (or the refinement of EICA) hypotheses did not consider founder effects.In this study, genetic and phenotypic data of Chromolaena odorata populations sampled across native and introduced ranges were combined to investigate the role of postintroduction evolution in the successful invasion of C. odorata.Compared with native populations, the introduced populations exhibited lower levels of genetic diversity. Moreover, different founder effects events were interpreted as the main cause of the genetic structure observed in introduced ranges. Three Florida, two Trinidad, and two Puerto Rico populations may have been the sources of the invasive C. odorata in Asia.When in free of competition conditions, C. odorata plants from introduced ranges perform better than those from native ranges at high nutrient supply but not at low nutrient level. The differences in performance due to competition were significantly greater for C. odorata plants from the native range than those from the introduced range at both nutrient levels. Moreover, the differences in performance by competition were significantly greater for putative source populations than for invasive populations.Quantities of three types of secondary compounds in leaves of invasive C. odorata populations were significantly higher than those in putative source populations. These results provide more accurate evidence that the competitive ability of the introduced C. odorata is increased with postintroduction evolution.

Spatial connectivity during the early life history of a temperate marine fish inferred from otolith microstructure and geochemistry

Connectivity during the ontogenetic development of fishes identifies the spatial scale over which populations function, which is the appropriate scale for conservation and management. For many marine species, spawning grounds and nursery areas are spatially segregated and larval dispersal is an obligate process that connects life history stages. This study investigated the spatial scale of early life history for one such species, the King George whiting (Sillaginodes punctatus; Perciformes), through the retrospective analysis of otolith microstructure and elemental chemistry of recently-settled larvae. The aim was to determine whether the South Australian population constitutes a single panmictic stock, or if it comprises multiple sub-populations. Sizes (15.1–25.1 mm SL), ages (85–183 d) and hatch dates (24-Apr to 1-Aug) of larvae varied considerably between nursery areas at different spatial scales. Regional differences in multi-elemental otolith signatures indicated that multiple spawning grounds contribute to recruitment, and larvae that settled in each region dispersed through different water masses. Within each region, there were differences in hatch dates and otolith chemistry indicative of finer-scale relationships between particular spawning grounds and nursery areas, consistent with local oceanographic circulation patterns. Although multi-elemental signatures were year-specific, concentrations of Ba and Mn were largely responsible for spatial differences and assigned larvae to regional groups with 52–66% accuracy. The results suggest the State-wide stock is replenished by three putative source populations, and provide an example of how otolith chemistry can discriminate among geographically-close, yet-ecologically separated groups of fish in coastal marine ecosystems.

Genetic analysis of a recently established Undaria pinnatifida (Laminariales: Alariaceae) population in the northern Wadden Sea reveals close proximity between drifting thalli and the attached population

ABSTRACTUndaria pinnatifida, a kelp species native to East Asia, has become cosmopolitan and drawn increasing attention due to its worldwide spread in recent decades. Floating fragments of this alga were found washed ashore on Sylt in 2016, the first record of this species in Germany. Thalli attached to local oyster reefs were detected in 2017. The genetic relationship between the floating and attached thalli on Sylt, as well as their relevance to the populations from northern Europe and native regions, was hitherto unknown. Here, 10 microsatellite markers were used to assess relationships between the recently established population on Sylt and five other northern European populations in France (Brittany, West English Channel), the Netherlands and England (Plymouth, West English Channel) plus three natural populations in China. Almost no genetic differentiation was detected between the floating and attached populations on Sylt, but they were genetically distinct from all the other studied northern European populations. The very low genetic diversity revealed in the new founder populations of Sylt suggests that they came from genetically similar parents. The marked reduction in both the number of alleles and heterozygosity in the northern European populations, as compared with the Chinese ones, is typical of founder effects in recently populated regions. Prominent genetic divergence was found between most of the northern European populations except those within Brittany and Sylt. Further studies will focus on identifying the putative source populations that might be found on shellfish farms, in local marinas or the benthic habitats around Sylt Island.

Using host-associated differentiation to track source population and dispersal distance among insect vectors of plant pathogens.

Small, mobile insects are notoriously challenging to track across landscapes and manage in agricultural fields. However, genetic differentiation among insect populations and host plants acquired through host‐associated differentiation could be exploited to infer movement within crop systems and damage potential. Although many insects exhibit host‐associated differentiation, management strategies for insect vectors of plant pathogens assume a homogenous population. Nevertheless, phenotypic changes derived from host‐associated differentiation could manifest in altered behavior or physiology affecting the likelihood of vector–pathogen–plant interactions, or the subsequent efficiency of pathogen transmission. We used SNPs to assess genotypic structure and host‐associated differentiation in the cowpea aphid, Aphis craccivora Koch (Hemiptera: Aphididae). To do so, we sampled A. craccivora across the Midwestern United States. from two host plants, alfalfa (Medicago sativa) and black locust (Robinia pseudoacacia)—putative source populations for winged migrants. Simultaneously, we sampled winged A. craccivora landing in pumpkin fields where they transmit viruses. Structure analyses supported host‐associated differentiation by identifying two major genotypic groups: an alfalfa group containing a single multilocus genotype and a locust group containing all others. Winged locust‐group aphids landed at a much greater magnitude within focal fields during year 2 than year 1, while those in the alfalfa group remained fairly consistent. Spatial autocorrelation analyses indicated locust‐group aphid movement was characterized by small‐scale dispersal during year 2, likely originating from populations within 10 km. We also detected strong temporal differences in colonization from the two host plants. Early in the summer, most winged aphids (79.4%) derived from the locust group, whereas late in the summer more (58.3%) were from the alfalfa group. Because early crop growth stages are more susceptible to damage from aphid‐vectored viruses, these data implicate locust as the more important source and illustrate how host‐associated differentiation can be used to track dispersal and inform management of heterogeneous pest populations.