Biphasic pretreatment offers a sustainable method by integrating the fractionation of hemicellulose, lignin, and cellulose into a single process, thereby enhancing biomass resource utilization while reducing environmental impact. However, this process faces the challenge of diverse hemicellulose products with low added value. This study employed organic acid-catalyzed water/pentanol biphasic pretreatment to selectively convert hemicellulose into xylooligosaccharides (XOS), while simultaneously separating lignin and cellulose. Both the organic acids and pentanol used are biodegradable and compatible. The lactic acid (LA)/pentanol biphasic system was particularly effective for XOS production and lignin removal, attributed to the high acidity of LA and its relatively low partition coefficients in the water/pentanol system, crucial factors influencing hemicellulose and lignin separation efficiency. The XOS yields reached 46.9 %, while the lignin removal rate was 74.6 %. Additionally, LA/pentanol pretreatment significantly enhanced cellulose digestibility, demonstrated by an ethanol production of 54.1 g/L during simultaneous saccharification fermentation at 15 % solids loading. The recovered lignin from the organic phase retained the structural characteristics of native lignin. It also had a low molecular weight and abundant phenolic hydroxyl groups, indicating its suitability for further valorization. Pentanol maintained its performance after four cycles of reuse, demonstrating the stability and reusability of the solvent system. This study highlighted the potential of the LA/pentanol biphasic system for simultaneous hemicellulose conversion and lignin isolation, offering a simplified and sustainable one-step valorization route for biomass.