Proxy For Gross Primary Production Research Articles

Solar‐Induced Chlorophyll Fluorescence as a Potential Proxy for Gross Primary Production and Methane Emission in a Cool‐Temperate Bog in Northern Japan

AbstractWetlands play an essential role in the global greenhouse gas budget via carbon dioxide sequestration as well as methane emission. In recent decades, solar‐induced chlorophyll fluorescence (SIF) has been recognized as a remotely sensed proxy of gross primary productivity (GPP), which generates substrates for methane production. To examine the suitability of SIF for estimation of these two fluxes, we conducted ground tower‐based SIF observation with an ultrafine‐resolution spectroradiometer in conjunction with eddy covariance measurement in a cool‐temperate bog. The daily SIF retrieved in the red (687 nm) and far‐red (760 nm) bands (SIFred and SIFfar‐red, respectively) increased nonlinearly with GPP and linearly with absorbed photosynthetically active radiation (APAR). The relatively weak correlation between apparent SIF yield (ΦSIF = SIF/APAR) and light use efficiency implied that both APAR and plant physiology constrained the SIF emission in this wetland. The SIFred/SIFfar‐red ratio showed a significant negative relationship with vegetation greenness indices, and the similar seasonal variation in SIFred and SIFfar‐red indicated that the SIFred reabsorption effect only weakly influenced the SIFred–GPP relationship. Episodic temporal reduction in the water table did not distinctly influence SIF and ΦSIF. Estimation of the methane emission rate was subtly improved by incorporating SIF, which was substituted for GPP as the methanogenesis substrate, in a multivariable regression analysis together with two environmental factors: soil temperature and water table depth. This study illustrates the potential of both SIFred and SIFfar‐red to monitor GPP and to predict methane emission in wetlands.

Severe wildfire increased variability in the response of gross primary production to climate in an Eucalyptus dominated semi-arid woodland in South Australia

Frequency and severity of wildfires have intensified in many regions in the world. High severity fires often initiate vegetation regrowth and succession, and thus alter ecosystem processes and functioning. Understanding how high severity fire-induced variations in gross primary production (GPP) respond to climate variability is critically important. This study aimed to quantify fire-induced changes in the response of GPP to concurrent and antecedent precipitation and air temperature in a semi-arid woodland in South Australia, using MODIS derived near-infrared reflectance of vegetation (NIRv) time series data (2000–2021) and associated climate data. Additionally, the magnitude and time course of climate legacies on GPP of unburnt and severely burnt sites were determined. The results showed that fire severity increased the variability in post-fire vegetation recovery. Prior to fire disturbance, NIRv as a proxy of GPP, was predominately affected by both concurrent and antecedent precipitation. Pre-fire precipitation legacy was about 9 months. Post-fire precipitation legacy duration was shorter in the unburnt patches within fire scar (ca. 9 months) than outside the fire scar (ca. 15 months), suggesting that the unburnt patches remaining within fire scar were more vulnerable to climate change than the adjacent intact woodland. In addition, the temperature legacies varied over time, likely mediated by water availability in this woodland. Post-fire regrowth from lignotubers was not significantly affected by concurrent and antecedent climate variables, but dependent upon endogenous growth which depends on previous growth conditions. This may be due to the smaller root system which reduced the capacity for taking up rain water after the fire event when annual precipitation was relatively low. We suggest that higher temperature together with reduced and more variable precipitation in the future could induce greater uncertainty in recovery of Eucalyptus trees post-fire.

Impact of atmospheric dryness on solar-induced chlorophyll fluorescence: Tower-based observations at a temperate forest

Solar-induced chlorophyll fluorescence (SIF) is widely accepted as a proxy for gross primary productivity (GPP). Among the various SIF measurements, tower-based SIF measurements allow for continuous monitoring of SIF variation at a canopy scale with high temporal resolution, making it suitable for monitoring highly variable plant physiological responses to environmental changes. However, because of the strong and close relationship between SIF and absorbed photosynthetically active radiation (aPAR), it may be difficult to detect the influence of environmental drivers other than light conditions. Among the drivers, atmospheric dryness (vapor pressure deficit, VPD) is projected to increase as drought becomes more frequent and severe in the future, negatively impacting plants. In this study, we evaluated the tower-based high-frequency SIF measurement as a tool for detecting plant response to highly variable VPD. The study was performed in a mixed temperate forest in Virginia, USA, where a 40-m-tall flux tower has been measuring gas and energy exchanges and ancillary environmental drivers, and the Fluospec 2 system has been measuring SIF. We show that a proper definition of light availability to vegetation can reproduce SIF response to changing VPD that is comparable to GPP response as estimated from eddy covariance measurement: GPP decreased with rising VPD regardless of how aPAR was defined, whereas SIF decreased only when aPAR was defined as the PAR absorbed by chlorophyll (aPARchl) or simulated by a model (Soil Canopy Observation, Photochemistry and Energy fluxes, SCOPE). We simulated the effect of VPD on SIF with two different simulation modes of fluorescence emission representing contrasting moisture conditions, ‘Moderate’ and ‘Soil Moisture (SM) Stress’ modes. The decreasing SIF to rising VPD was only found in the SM Stress mode, implying that the SIF-VPD relationship depends on soil moisture conditions. Furthermore, we observed a similar response of SIF to VPD at hourly and daily scales, indicating that satellite measurements can be used to study the effects of environmental drivers other than light conditions. Finally, the definition of aPAR emphasizes the importance of canopy structure research to interpret remote sensing observations properly.

Stress-induced changes in photosynthesis and proximal fluorescence emission of turfgrass

Remote measurements of solar-induced fluorescence (SIF) are now widely used to model gross primary productivity (GPP). However, the ability of SIF to track GPP in different environments, conditions, and at different scales remains uncertain. We designed an experiment to measure SIF and photosynthesis while inducing plant stress in replicated turfgrass. Immediately following application of abscisic acid (ABA), treated grasses experienced a 75% decrease in photosynthesis and an 18% decline in SIFyield, with evidence of alterations in energy partitioning. Withholding water resulted in slower photosynthetic inhibition of lower magnitude, with full recovery upon rewatering. In both treatments, reductions in SIF co-occurred with reductions in canopy greenness. However, we did not observe a relationship between the SIF and near-infrared reflectance of vegetation (NIRv) responses to our treatments in turfgrass. The response differences between treatments highlight the nuances of using SIF as a proxy for GPP.

Drought and Waterlogging Stress Regimes in Northern Peatlands Detected Through Satellite Retrieved Solar‐Induced Chlorophyll Fluorescence

AbstractThe water table depth (WTD) in peatlands determines the soil carbon decomposition rate and influences vegetation growth, hence the above‐ground carbon assimilation. Here, we used satellite‐observed Solar‐Induced chlorophyll Fluorescence (SIF) as a proxy of Gross Primary Production (GPP) to investigate water‐related vegetation stress over northern peatlands. A linear model with interaction effects was used to relate short‐ and long‐term anomalies in SIF with WTD anomalies and the absolute WTD. Most locations showed the occurrence of drought and waterlogging stress though regions with exclusively waterlogging or drought stress were also detected. As a spatial median, minimal water‐related vegetation stress was found for a WTD of −0.22 m (short‐term) and −0.20 m (long‐term) (±0.01 m, 95% confidence interval of statistical uncertainty). The stress response observed with SIF is supported by an analysis of in situ GPP data. Our findings provide insight into how changes in WTD of northern peatlands could affect GPP under climate change.

How Do Sky Conditions Affect the Relationships Between Ground‐Based Solar‐Induced Chlorophyll Fluorescence and Gross Primary Productivity Across Different Plant Types?

AbstractSolar‐induced chlorophyll fluorescence (SIF) has been used as a proxy for gross primary productivity (GPP) estimations. However, knowledge on how links between SIF and GPP across different plant types vary in response to sky conditions remain unclear. Here, we investigated the effects of sky conditions on the GPP‐SIF relationship based on continuous measurements of SIF and flux across four different plant types. Our analysis shows that the GPP‐SIF links are affected by sky conditions and these linking patterns respond differently across plant types. We propose that the inconsistent responses of SIF and GPP to sky conditions are primarily driven by variations in light use efficiency (LUE = GPP/absorbed photosynthetic active radiation (APAR)). Furthermore, we explore a quantitative variation in LUE and SIFyield (SIF/APAR) separately via a decoupling of clearness index (CI) and photosynthetic active radiation under different sky conditions. LUE is more sensitive to sky conditions for the C3 plants (Forest, Wheat and Rice) than the C4 plant (Maize), and SIFyield shows more sensitivity to sky conditions for the forest than croplands. Due to the tight link between CI and other environmental factors, the incorporation of CI into the SIF‐based GPP model improves GPP estimates for all C3 plants at both instantaneous and daily scales. Our study implies that a consideration of sky conditions into the SIF‐based GPP model can significantly advance the GPP modeling under all sky conditions.

Temporally corrected long-term satellite solar-induced fluorescence leads to improved estimation of global trends in vegetation photosynthesis during 1995–2018

Terrestrial gross primary production (GPP) is one of the largest flux of carbon cycle and also introduces the largest uncertainties of the estimated global carbon budget. During the past decades, the emerging remotely-sensed solar-induced chlorophyll fluorescence (SIF) data have been rapidly developed as the novel proxy of GPP. Though satellite SIF datasets have been widely used for plenty of climatic and ecological studies, a lack of consistent long-term satellite SIF data has hindered its use for long-term assessments due to their temporal inconsistency induced by sensor degradation. Here, based on the time series of SIF data at the Sahara Desert as the benchmark, we present a practical approach to correct the temporal inconsistency of different satellites (GOME, SCIAMACHY and GOME-2) far-red SIF data. The temporally corrected SIF datasets were then spatially downscaled to a finer resolution of 0.05° with the light-use-efficiency (LUE) method. Then, the individual time series of SIF data from the three satellite sensors were fused together to generate a continuously long-term consistent global SIF dataset from July 1995 to December 2018 (termed as LT_SIFc*). We further validated and compared the spatial and temporal characteristics of LT_SIFc* with the ground-based long-term GPP observations from 15 flux sites, modelled global long-term GPP time series, and high-spatial resolution SIF from TROPOMI and OCO-2, respectively. Our results show that the LT_SIFc* can capture the temporal trends and inter-annual variations for both site- and global-GPP, and also the global spatial distributions of SIF at the spatial resolution of 0.05° validated with TROPOMI SIF (R2 = 0.76, RMSE = 0.11 mW m−2 nm−1 sr-1). Our temporally corrected and spatially downscaled global long-term SIF product has the potential for the better estimations of global spatial–temporal variations in GPP, and also could be helpful for the improvement in the predictions of future land carbon storage and climate change.

Sun-induced fluorescence as a proxy for primary productivity across vegetation types and climates

Abstract. Sun-induced chlorophyll a fluorescence (SIF) retrieved from satellites has shown potential as a remote sensing proxy for gross primary productivity (GPP). However, to fully exploit the potential of this signal, the robustness and stability of the SIF–GPP relationship across vegetation types and climates must be assessed. For this purpose, current studies have been limited by the availability of SIF datasets with sufficient spatial resolution to disentangle the signal between different vegetation cover types. To overcome this limitation, this analysis uses GOME-2 (Global Ozone Monitoring Experiment-2) SIF retrievals, downscaled to a resolution of 0.05∘ (∼5 km) to explore the relationship between SIF and FLUXCOM GPP (GPPFX), a data-driven dataset of primary productivity obtained by upscaling flux-tower measurements. The high resolution of the downscaled SIF (SIFDS) dataset allows the relationships to be broken down by vegetation cover for separate climate zones, thus enabling a confrontation between GPP and SIF at fine granularity. This analysis first investigates the spatial and temporal relationships between FLUXCOM GPP and downscaled SIF at a global scale. A reasonably strong linear relationship is generally observed between SIFDS and GPPFX in all vegetation categories, and an analysis of covariance (ANCOVA) shows that the spatial response is similar between certain plant traits, with some distinction between herbaceous and woody vegetation and notable exceptions, such as equatorial broadleaf forests. Geographical regions of non-linearity suggest where SIFDS could potentially provide information about ecosystem dynamics that are not represented in the FLUXCOM GPP dataset. With the demonstration of downscaled SIF as a proxy for GPP, the response of SIFDS to short-term fluctuations in several meteorological variables is analysed and the most significant short-term environmental driving and limiting meteorological variables determined. Vegetation groupings of similar SIF–meteorological response reinforce the vegetation categorisations suggested by the ANCOVA. This comparative exploration of two of the most recent products in carbon productivity estimation shows the value in downscaling SIF data, provides an independent probe of the FLUXCOM GPP model, enhances our understanding of the global SIF–GPP spatio-temporal relationship with a particular focus on the role of vegetation cover, and explores the similarity of the SIF and GPP responses to meteorological fluctuations. Additional analyses with alternative SIF and GPP datasets support these conclusions.

Effects of Low Temperature on the Relationship between Solar-Induced Chlorophyll Fluorescence and Gross Primary Productivity across Different Plant Function Types

Solar-induced chlorophyll fluorescence (SIF) has been recognized as a proxy of gross primary production (GPP) across various terrestrial biomes. However, the effects of low temperature on SIF and GPP among different plant function types (PFTs) have not yet been well-explored. To gain a better understanding of the relationship between SIF and GPP, we investigated the variation in the GPP/SIF ratio in response to low-temperature conditions using satellite and tower-based datasets. Based on the TROPOMI SIF product and FLUXCOM GPP data, we found that the SIF and GPP exhibited consistent seasonal and spatial patterns, while the GPP/SIF ratio differed for different PFTs. The GPP/SIF ratio for forest types was generally higher than 10 gC·d−1·mw−1·nm·sr, whereas the GPP/SIF ratio for grass and crop types was generally lower than 10 gC·d−1·mw−1·nm·sr. In addition, there were noticeable differences in the seasonal pattern of the GPP/SIF ratio between the selected samples that experienced low-temperature stress (below 10 °C, defined as group A) and those that grew under relatively warm conditions (above 10 °C throughout the year, defined as group B). The GPP/SIF ratio for group A generally exhibited a “hump-shaped” seasonal pattern, and that for group B showed a slightly “bowl-shaped” seasonal pattern, which means it is important to consider the effects of temperature on the SIF-GPP relationship. Through linear regression and correlation analysis, we demonstrate that there was a positive correlation between the GPP/SIF ratio and temperature for group A, with a wide temperature range including low-temperature conditions, indicating that, in this case, temperature affected the SIF–GPP relationship; however, for group B—with a temperature higher than 10 °C throughout the year—the GPP/SIF ratio was not consistently affected by temperature. The response of GPP/SIF to low temperature stress was confirmed by tower-based observations at a C3 cropland (C3CRO) site and a boreal evergreen needleleaf forest (BoENF) site. Although the relationship between the GPP/SIF ratio and temperature differed among PFTs, the GPP/SIF ratio decreased under low-temperature conditions for PFTs. Therefore, the GPP/SIF ratio was not constant and was largely influenced by low temperature for different PFTs, thus highlighting the importance of incorporating temperature into SIF-based GPP estimation.

Divergent historical GPP trends among state-of-the-art multi-model simulations and satellite-based products

Abstract. Understanding historical changes in gross primary productivity (GPP) is essential for better predicting the future global carbon cycle. However, the historical trends of terrestrial GPP, due to the CO2 fertilization effect, climate, and land-use change, remain largely uncertain. Using long-term satellite-based near-infrared radiance of vegetation (NIRv), a proxy for GPP, and multiple GPP datasets derived from satellite-based products, dynamic global vegetation model (DGVM) simulations, and an upscaled product from eddy covariance (EC) measurements, here we comprehensively investigated their trends and analyzed the causes for any discrepancies during 1982–2015. Although spatial patterns of climatological annual GPP from all products and NIRv are highly correlated (r>0.84), the spatial correlation coefficients of trends between DGVM GPP and NIRv significantly decreased (with the ensemble mean of r=0.49) and even the spatial correlation coefficients of trends between other GPP products and NIRv became negative. By separating the global land into the tropics plus extratropical Southern Hemisphere (Trop+SH) and extratropical Northern Hemisphere (NH), we found that, during 1982–2015, simulated GPP from most of the models showed a stronger increasing trend over Trop+SH than NH. In contrast, the satellite-based GPP products indicated a substantial increase over NH. Mechanistically, model sensitivity experiments indicated that the increase of annual global total GPP was dominated by the CO2 fertilization effect (83.9 % contribution), however, with the largest uncertainty in magnitude in individual simulations among the three drivers of CO2 fertilization, climate, and land-use change. Interestingly, the spatial distribution of inter-model spreads of GPP trends resulted mainly from climate and land-use change rather than CO2 fertilization effect. After 2000, trends from satellite-based GPP products were different from the full time series, suggesting weakened rising trends over NH and even significantly decreasing trends over Trop+SH, while the trends from DGVMs and NIRv kept increasing. The inconsistencies of GPP trends are very likely caused by the contrasting performance between satellite-derived and DGVM simulated vegetation structure parameter (leaf area index, LAI). Therefore, the uncertainty in satellite-based GPP products induced by highly uncertain LAI data in the tropics undermines their roles in assessing the performance of DGVM simulations and understanding the changes of global carbon sinks. The higher consistency between DGVM GPP and NIRv suggests that the trends from a DGVM ensemble might even have better performance than satellite-based GPP products.

A convolutional neural network for spatial downscaling of satellite-based solar-induced chlorophyll fluorescence (SIFnet)

Abstract. Gross primary productivity (GPP) is the sum of leaf photosynthesis and represents a crucial component of the global carbon cycle. Space-borne estimates of GPP typically rely on observable quantities that co-vary with GPP such as vegetation indices using reflectance measurements (e.g., normalized difference vegetation index, NDVI, near-infrared reflectance of terrestrial vegetation, NIRv, and kernel normalized difference vegetation index, kNDVI). Recent work has also utilized measurements of solar-induced chlorophyll fluorescence (SIF) as a proxy for GPP. However, these SIF measurements are typically coarse resolution, while many processes influencing GPP occur at fine spatial scales. Here, we develop a convolutional neural network (CNN), named SIFnet, that increases the resolution of SIF from the TROPOspheric Monitoring Instrument (TROPOMI) on board of the satellite Sentinel-5P by a factor of 10 to a spatial resolution of 500 m. SIFnet utilizes coarse SIF observations together with high-resolution auxiliary data. The auxiliary data used here may carry information related to GPP and SIF. We use training data from non-US regions between April 2018 until March 2021 and evaluate our CNN over the conterminous United States (CONUS). We show that SIFnet is able to increase the resolution of TROPOMI SIF by a factor of 10 with a r2 and RMSE metrics of 0.92 and 0.17 mW m−2 sr−1 nm−1, respectively. We further compare SIFnet against a recently developed downscaling approach and evaluate both methods against independent SIF measurements from Orbiting Carbon Observatory 2 and 3 (together OCO-2/3). SIFnet performs systematically better than the downscaling approach (r=0.78 for SIFnet, r=0.72 for downscaling), indicating that it is picking up on key features related to SIF and GPP. Examination of the feature importance in the neural network indicates a few key parameters and the spatial regions in which these parameters matter. Namely, the CNN finds low-resolution SIF data to be the most significant parameter with the NIRv vegetation index as the second most important parameter. NIRv consistently outperforms the recently proposed kNDVI vegetation index. Advantages and limitations of SIFnet are investigated and presented through a series of case studies across the United States. SIFnet represents a robust method to infer continuous, high-spatial-resolution SIF data.

Adjusting solar-induced fluorescence to nadir-viewing provides a better proxy for GPP

Solar-induced fluorescence (SIF) provides key information for inferring terrestrial gross primary productivity (GPP). However, there is little research on analyzing the performance of nadir-adjusted SIF (SIFnadir) on GPP, compared to total SIF emitted by all leaves (SIFtotal) for reducing the viewing angle effects and estimating GPP. Besides, there have been controversial opinions on whether SIFtotal is better correlated to GPP than raw SIF observations (SIFobs). Here we systematically analyzed the relationship between raw/nadir/total SIF (i.e., SIFobs, SIFnadir and SIFtotal) and GPP and investigated the underlying mechanism, using multi-angular field measurements and eddy covariance data in wheat and corn crops at sub-daily scale. We further compared the performance of SIFobs, SIFnadir and SIFtotal in estimating GPP using the TROPOspheric Monitoring Instrument (TROPOMI) SIF and concurrent AmeriFlux measurements at daily scale. The results indicate that diurnal SIFnadir has stronger correlations to GPP than SIFobs for field measurements, with the increase of mean coefficient of determination (R2) by 0.05–0.07 for far-red band and 0.11–0.20 for red band. SIFnadir shows comparable performance with SIFtotal for both far-red and red bands. Although the viewing angle effects dominate the difference in estimating GPP between SIFnadir and SIFobs, the correlation between light use efficiency (LUE) and fesc further determines the different performance of SIFnadir and SIFtotal in estimating GPP. TROPOMI-based analysis further confirms that SIFnadir overall has higher correlations to AmeriFlux GPP than SIFobs for different plant functional types and shows similar performance with SIFtotal. Compared to SIFtotal, the estimation of SIFnadir independent of viewing angle effects does not require any canopy structure parameters, and thus offers promising potential for reliably estimating regional and global GPP.

Diurnal and Seasonal Dynamics of Solar‐Induced Chlorophyll Fluorescence, Vegetation Indices, and Gross Primary Productivity in the Boreal Forest

AbstractRemote sensing of solar‐induced chlorophyll fluorescence (SIF) provides a powerful proxy for gross primary productivity (GPP). It is particularly promising in boreal ecosystems where seasonal downregulation of photosynthesis occurs without significant changes in canopy structure or chlorophyll content. The use of SIF as a proxy for GPP is complicated by inherent non‐linearities due to both physical (illumination effects) and ecophysiological (light use efficiencies) controls at fine spatial (tower/leaf) and temporal (half‐hourly) scales. To study the SIF‐GPP relationship, we investigated the diurnal and seasonal dynamics of continuous tower‐based measurements of SIF, GPP, and common vegetation indices at the Southern Old Black Spruce Site (SOBS) in Saskatchewan, CA over the course of two years. We find that SIF outperforms other vegetation indices as a proxy for GPP at all temporal scales but shows a non‐linear relationship with GPP at a half‐hourly resolution. At small temporal scales, SIF and GPP are predominantly driven by light and non‐linearity between SIF and GPP is due to the light saturation of GPP. Averaged over daily and monthly scales, the relationship between SIF and GPP is linear due to a reduction in the observed PAR range. Seasonal changes in the light responses of SIF and GPP are driven by changes in light use efficiency which co‐vary with changes in temperature, while illumination and canopy structure partially linearize the SIF‐GPP relationship. Additionally, we find that the SIF‐GPP relationship has a seasonal dependency. Our results help clarify the utility of SIF for estimating carbon assimilation in boreal forests.

Nirvp as a Proxy for Gross Primary Productivity Across Different Biomes and Climate Zones: Performance and Limitations

Nirvp as a Proxy for Gross Primary Productivity Across Different Biomes and Climate Zones: Performance and Limitations

TROPOMI observations allow for robust exploration of the relationship between solar-induced chlorophyll fluorescence and terrestrial gross primary production

Solar-induced chlorophyll fluorescence (SIF) observed by satellites has advanced the monitoring of terrestrial photosynthesis regionally and globally. The relationship between SIF and gross primary production (GPP) at leaf, canopy, and ecosystem scales has received tremendous attention in recent years. It remains controversial whether the SIF-GPP relationship at the ecosystem scale is universal or dependent upon vegetation type. New SIF observations from the TROPOspheric Monitoring Instrument (TROPOMI) with unprecedented high spatial and temporal resolution provide a new opportunity to elucidate the SIF-GPP relationship. Here, we examine the SIF-GPP relationship for seven major vegetation types across the U.S. with TROPOMI SIF and in-situ GPP data for 83 eddy covariance flux sites. We find that TROPOMI SIF shows a strong and consistent relationship with tower-based GPP at both satellite footprint and grid-cell levels. The slope of the SIF-GPP relationship is similar among all the vegetation types except croplands, demonstrating a nearly universal (converging to ~13.5 g C m−2 d−1/W m−2 μm−1 sr−1) rather than vegetation type-specific SIF-GPP relationship. This confirms that TROPOMI SIF can be used as a proxy for GPP across a wide variety of vegetation types, and can also be used to quantify GPP by avoiding uncertainty associated with land cover maps. The C4 crops have a much higher slope than the C3 crops, and therefore croplands tend to have a higher slope than C3-dominated vegetation types (e.g., forests, shrublands, savannas). We also find that the TROPOMI SIF is well correlated with GPP under normal or wetter conditions, while their relationship becomes weaker under water stress. Our TROPOMI-based study could improve our understanding of the SIF-GPP relationship at the ecosystem scale and advance the mapping of GPP globally with SIF observations from space.

On the Covariation of Chlorophyll Fluorescence and Photosynthesis Across Scales

AbstractRecent advances in remote sensing of solar‐induced chlorophyll fluorescence (SIF) have garnered wide interest from the biogeoscience and Earth system science communities, due to the observed linearity between SIF and gross primary productivity (GPP) at increasing spatiotemporal scales. Three recent studies, Maguire et al., (2020, https://doi.org/10.1029/2020GL087858), He et al. (2020, https://doi.org/10.1029/2020GL087474), and Marrs et al. (2020, https://doi.org/10.1029/2020GL087956) highlight a nonlinear relationship between fluorescence and photochemical yields and show empirical evidence for the decoupling of SIF, stomata, and the carbon reactions of photosynthesis. Such mechanistic studies help advance our understanding of what SIF is and what it is not. We argue that these findings are not necessarily contradictory to the linear SIF‐GPP relationship observed at the satellite scale and provide context for where, when, and why fluorescence and photosynthesis diverge at smaller spatiotemporal scales. Understanding scale dependencies of remote sensing data is crucial for interpreting SIF as a proxy for GPP.

Capturing the Impact of the 2018 European Drought and Heat across Different Vegetation Types Using OCO-2 Solar-Induced Fluorescence

The European heatwave of 2018 led to record-breaking temperatures and extremely dry conditions in many parts of the continent, resulting in widespread decrease in agricultural yield, early tree-leaf senescence, and increase in forest fires in Northern Europe. Our study aims to capture the impact of the 2018 European heatwave on the terrestrial ecosystem through the lens of a high-resolution solar-induced fluorescence (SIF) data acquired from the Orbiting Carbon Observatory-2 (OCO-2) satellite. SIF is proposed to be a direct proxy for gross primary productivity (GPP) and thus can be used to draw inferences about changes in photosynthetic activity in vegetation due to extreme events. We explore spatial and temporal SIF variation and anomaly in the spring and summer months across different vegetation types (agriculture, broadleaved forest, coniferous forest, and mixed forest) during the European heatwave of 2018 and compare it to non-drought conditions (most of Southern Europe). About one-third of Europe’s land area experienced a consecutive spring and summer drought in 2018. Comparing 2018 to mean conditions (i.e., those in 2015–2017), we found a change in the intra-spring season SIF dynamics for all vegetation types, with lower SIF during the start of spring, followed by an increase in fluorescence from mid-April. Summer, however, showed a significant decrease in SIF. Our results show that particularly agricultural areas were severely affected by the hotter drought of 2018. Furthermore, the intense heat wave in Central Europe showed about a 31% decrease in SIF values during July and August as compared to the mean over the previous three years. Furthermore, our MODIS (Moderate Resolution Imaging Spectroradiometer) and OCO-2 comparative results indicate that especially for coniferous and mixed forests, OCO-2 SIF has a quicker response and a possible higher sensitivity to drought in comparison to MODIS’s fPAR (fraction of absorbed photosynthetically active radiation) and the Normalized Difference Vegetation Index (NDVI) when considering shorter reference periods, which highlights the added value of remotely sensed solar-induced fluorescence for studying the impact of drought on vegetation.

Assessing bi-directional effects on the diurnal cycle of measured solar-induced chlorophyll fluorescence in crop canopies

Solar-induced chlorophyll fluorescence (SIF) has shown to be a good proxy of gross primary production (GPP) across multiple spatial and temporal scales. The dependence of top-of-canopy measurements of SIF on the illumination and observation directions has been recognized as an important factor in the relationship between SIF and GPP across multiple spatiotemporal scales. In this study, we investigated angular effects in diurnal observed SIF (SIFobs) measurements taken with a multi-angle SIF measuring system in a wheat-corn rotational field during the growing season of 2018. Our results reveal strong angular dependencies in diurnal measurements of top-of-canopy SIF for both red SIFobs (RSIFobs) and far-red SIFobs (FRSIFobs). We also observe that the correlation between SIFobs (RSIFobs and FRSIFobs) and GPP depends on both the illumination and viewing directions. To mitigate angular effects in SIFobs, an approach based on spectral reflectance measurements was used. The derived canopy total SIF emission (SIFtotal) at both red and far-red bands (RSIFtotal and FRSIFtotal) showed less angular dependencies and stronger relationships to APAR and GPP than RSIFobs and FRSIFobs. These results highlight the important role of angular effects in SIF when interpreting directional SIFobs retrievals from space, which normally include large variations in sun-target-viewing geometries. This study contributes to our understanding of angular effects on SIF-GPP relationships and subsequently help improve the estimation of GPP from SIF data.

Improving the potential of red SIF for estimating GPP by downscaling from the canopy level to the photosystem level

Numerous studies have proved that solar-induced chlorophyll fluorescence (SIF) is a good proxy of gross primary production (GPP). The SIF spectrum covers the spectral window from about 640 nm to 850 nm. Due to the strong chlorophyll absorption effect at the red band, the red SIF is much more influenced by the radiative transfer effect inside the canopy than the near infrared (NIR) SIF is. Therefore, at the canopy level, the NIR SIF shows more potential for use in estimating GPP. However, the red-band SIF contains more information about PS II, which is more sensitive to photosynthesis. So, in theory, if the canopy radiative transfer effect could be corrected for, the potential of the red SIF for estimating GPP would be greatly improved. In this paper, we propose a new simple reflectance-based method for estimating the photosystem-level SIF at both the NIR band and the red band. Long-term observations of SIF and GPP at two crop sites in two years (four datasets in total) were used to investigate the SIF−GPP relationship at the canopy or photosystem level. The SIF downscaled by the simple reflectance-based approach is found to be consistent with that found using the random forest regression method proposed formerly. For the NIR band, the performance of the canopy-level SIF and PS-level SIF for GPP estimation is similar while, for the red band, the correlation between the SIF and GPP is greatly improved after downscaling the canopy-level SIF to the PS level. For the four test datasets, at the red band, the values of R2 for the SIF−GPP relationship increase from 0.213−0.599 to 0.398−0.759 after the downscaling. At the PS level, the performance of the red SIF for GPP estimation is as good as or even better than that of the NIR-band SIF. The results of this study indicate that estimation of the SIF photosystem level to canopy level escape probability is important, and that more importance should be paid to the red-band SIF in the monitoring of GPP.

Comparison of Bi-Hemispherical and Hemispherical-Conical Configurations for In Situ Measurements of Solar-Induced Chlorophyll Fluorescence

During recent decades, solar-induced chlorophyll fluorescence (SIF) has shown to be a good proxy for gross primary production (GPP), promoting the development of ground-based SIF observation systems and supporting a greater understanding of the relationship between SIF and GPP. However, it is unclear whether such SIF-oriented observation systems built from different materials and of different configurations are able to acquire consistent SIF signals from the same target. In this study, we used four different observation systems to measure the same targets together in order to investigate whether SIF from different systems is comparable. Integration time (IT), reflectance, and SIF retrieved from different systems with hemispherical-conical (hemi-con) and bi-hemispherical (bi-hemi) configurations were also evaluated. A newly built prism system (SIFprism, using prism to collect both solar and target radiation) has the shortest IT and highest signal to noise ratio (SNR). Reflectance collected from the different systems showed small differences, and the diurnal patterns of both red and far-red SIF derived from different systems showed a marginal difference when measuring the homogeneous vegetation canopy (grassland). However, when the target is heterogeneous, e.g., the Epipremnum aureum canopy, the values and diurnal pattern of far-red SIF derived from systems with a bi-hemi configuration were obviously different with those derived from the system with hemi-con configuration. These results demonstrate that different SIF systems are able to acquire consistent SIF for landscapes with a homogeneous canopy. However, SIF retrieved from bi-hemi and hemi-con configurations may be distinctive when the target is a heterogeneous (or discontinuous) canopy due to the different fields of view and viewing geometries. Our findings suggest that the bi-hemi configuration has an advantage to measure heterogeneous canopies due to the large field of view for upwelling sensors being representative for the footprint of the eddy covariance flux measurements.